Deep Neuron Embeddings: Data-driven multi-modal discovery of cell types in the neocortex

Informazioni relative al progetto

DeepNeuronEmbeddings

ID dell’accordo di sovvenzione: 101041669

DOI

10.3030/101041669

Data della firma CE 8 Febbraio 2022

Data di avvio 1 Giugno 2022

Data di completamento 31 Maggio 2027

Finanziato da

• European Research Council (ERC)

Costo totale

€ 1 500 000,00

Contributo UE

€ 1 500 000,00

Coordinato da

GEORG-AUGUST-UNIVERSITAT GOTTINGEN STIFTUNG OFFENTLICHEN RECHTS
Germany

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Pubblicazioni

Conference proceedings (6)

Learning to cluster neuronal function

Autori: Nina S Nellen, Polina Turishcheva, Michaela Vystrčilová, Shashwat Sridhar, Tim Gollisch, Andreas S Tolias, Alexander S Ecker
Pubblicato in: Advances in Neural Information Processing Systems, 2025
Editore: Advances in Neural Information Processing Systems

What should a neuron aim for? Designing local objective functions based on information theory

Autori: Schneider, Andreas C.; Neuhaus, Valentin; Ehrlich, David Alexander; Makkeh, Abdullah; Ecker, Alexander S.; Priesemann, Viola; Wibral, Michael
Pubblicato in: International Conference on Learning Representations (ICLR), 2024
Editore: International Conference on Learning Representations (ICLR)
DOI: 10.5281/ZENODO.15510651

The Sensorium competition on predicting large-scale mouse primary visual cortex activity

Autori: Willeke, Konstantin F.; Fahey, Paul G.; Bashiri, Mohammad; Pede, Laura; Burg, Max F.; Blessing, Christoph; Cadena, Santiago A.; Ding, Zhiwei; Lurz, Konstantin-Klemens; Ponder, Kayla; Muhammad, Taliah; Patel, Saumil S.; Ecker, Alexander S.; Tolias, Andreas S.; Sinz, Fabian H.
Pubblicato in: Advances in Neural Information Processing Systems (NeurIPS), 2023
Editore: Advances in Neural Information Processing Systems (NeurIPS)
DOI: 10.48550/arxiv.2206.08666

Retrospective for the Dynamic Sensorium Competition for predicting large-scale mouse primary visual cortex activity from videos

Autori: Polina Turishcheva, Paul G. Fahey, Michaela Vystrčilová, Laura Hansel, ..., Andreas S. Tolias, Fabian H. Sinz, Alexander S. Ecker
Pubblicato in: Advances in Neural Information Processing Systems, 2024
Editore: Advances in Neural Information Processing Systems

Most discriminative stimuli for functional cell type identification

Autori: Burg, Max F.; Zenkel, Thomas; Vystrčilová, Michaela; Oesterle, Jonathan; Höfling, Larissa; Willeke, Konstantin F.; Lause, Jan; Müller, Sarah; Fahey, Paul G.; Ding, Zhiwei; Restivo, Kelli; Sridhar, Shashwat; Gollisch, Tim; Berens, Philipp; Tolias, Andreas S.; Euler, Thomas; Bethge, Matthias; Ecker, Alexander S.
Pubblicato in: International Conference on Learning Representations, 2024
Editore: International Conference on Learning Representations

Reproducibility of predictive networks for mouse visual cortex

Autori: Polina Turishcheva, Max Burg, Fabian H Sinz, Alexander Ecker
Pubblicato in: Advances in Neural Information Processing Systems, 2024
Editore: NeurIPS Foundation

Other (6)

Bipartite invariance in mouse primary visual cortex

Autori: Zhiwei Ding; Dat T. Tran; Kayla Ponder; Erick Cobos; Zhuokun Ding; Paul G. Fahey; Eric Wang; Taliah Muhammad; Jiakun Fu; Santiago A. Cadena; Stelios Papadopoulos; Saumil Patel; Katrin Franke; Jacob Reimer; Fabian H. Sinz; Alexander S. Ecker; Xaq Pitkow; Andreas S. Tolias
Pubblicato in: bioRxiv, 2023
Editore: bioRxiv
DOI: 10.1101/2023.03.15.532836

MorphOcc: An Implicit Generative Model of Neuronal Morphologies

Autori: Laura Hansel, Timo Lüddecke, Marissa A. Weis, Alexander S Ecker
Pubblicato in: OpenReview, 2023
Editore: OpenReview

Willeke, Restivo, Franke, Nix, Cadena, ... Ecker, Sinz & Tolias (2023): Deep learning-driven characterization of single cell tuning in primate visual area V4 unveils topological organization. bioRxiv.

Autori: Willeke, K.F., Restivo, K., Franke, K., Nix, A.F., Cadena, S.A., Shinn, T., Nealley, C., Rodriguez, G., Patel, S.S., Ecker, A.S., Sinz, F.H., & Tolias, A.S.
Pubblicato in: bioRxiv, 2023
Editore: bioRxiv
DOI: 10.1101/2023.05.12.540591

Towards a Foundation Model of the Mouse Visual Cortex

Autori: Eric Y. Wang; Paul G. Fahey; Kayla Ponder; Zhuokun Ding; Andersen Chang; Taliah Muhammad; Saumil Patel; Zhiwei Ding; Dat Tran; Jiakun Fu; Stelios Papadopoulos; Katrin Franke; Alexander S. Ecker; Jacob Reimer; Xaq Pitkow; Fabian H. Sinz; Andreas S. Tolias
Pubblicato in: bioRxiv, 2023
Editore: bioRxiv
DOI: 10.1101/2023.03.21.533548

The Dynamic Sensorium competition for predicting large-scale mouse visual cortex activity from videos

Autori: Turishcheva, Polina; Fahey, Paul G.; Hansel, Laura; Froebe, Rachel; Ponder, Kayla; Vystrčilová, Michaela; Willeke, Konstantin F.; Bashiri, Mohammad; Wang, Eric; Ding, Zhiwei; Tolias, Andreas S.; Sinz, Fabian H.; Ecker, Alexander S.
Pubblicato in: arXiv, 2023
Editore: arXiv
DOI: 10.48550/arxiv.2305.19654

Pattern completion and disruption characterize contextual modulation in mouse visual cortex

Autori: Jiakun Fu; Suhas Shrinivasan; Kayla Ponder; Taliah Muhammad; Zhuokun Ding; Eric Wang; Zhiwei Ding; Dat T. Tran; Paul G. Fahey; Stelios Papadopoulos; Saumil Patel; Jacob Reimer; Alexander S. Ecker; Xaq Pitkow; Ralf M. Haefner; Fabian H. Sinz; Katrin Franke; Andreas S. Tolias
Pubblicato in: bioRxiv, 2023
Editore: bioRxiv
DOI: 10.1101/2023.03.13.532473

Peer reviewed articles (4)

Nature Communications

Autori: Weis, MA ... Ecker, AS
Pubblicato in: Nature Communications, 2025, ISSN 2041-1723
Editore: Springer Nature
DOI: 10.1101/2022.12.22.521541

Foundation model of neural activity predicts response to new stimulus types

Autori: Eric Y. Wang; Paul G. Fahey; Zhuokun Ding; Stelios Papadopoulos; Kayla Ponder; Marissa A. Weis; Andersen Chang; Taliah Muhammad; Saumil Patel; Zhiwei Ding; Dat Tran; Jiakun Fu; Casey M. Schneider-Mizell; Nuno Maçarico da Costa; R. Clay Reid; Forrest Collman; Nuno Maçarico da Costa; Katrin Franke; Alexander S. Ecker; Jacob Reimer; Xaq Pitkow; Fabian H. Sinz; Andreas S. Tolias
Pubblicato in: Nature, 2025, ISSN 1476-4687
Editore: Springer Nature
DOI: 10.1038/S41586-025-08829-Y

Self-Supervised Graph Representation Learning for Neuronal Morphologies

Autori: Weis, Marissa A.; Hansel, Laura; Lüddecke, Timo; Ecker, Alexander S.
Pubblicato in: Transactions on Machine Learning Research, 2023
Editore: TMLR
DOI: 10.48550/arXiv.2112.12482

eLife

Autori: Larissa Höfling; Klaudia P Szatko; Christian Behrens; Yuyao Deng; Yongrong Qiu; David Alexander Klindt; Zachary Jessen; Gregory W Schwartz; Matthias Bethge; Philipp Berens; Katrin Franke; Alexander S Ecker; Thomas Euler
Pubblicato in: eLife, 2024, ISSN 2050-084X
Editore: eLife Sciences Publications Ltd
DOI: 10.7554/ELIFE.86860