Artificial Intelligence for Image Data Analysis in the Life Sciences

Informations projet

AI4LIFE

N° de convention de subvention: 101057970

DOI

10.3030/101057970

Projet clôturé

Date de signature de la CE 31 Mai 2022

Date de début 1 Septembre 2022

Date de fin 31 Août 2025

Financé au titre de

• Research infrastructures

Coût total

€ 4 141 167,53

Contribution de l’UE

€ 4 141 166,00

Coordonné par

EURO-BIOIMAGING ERIC
Finland

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Documents, reports (6)

Report on establishment of project management procedures and executive group

All project management procedures are established and the Executive Board is assembled

Annotation standards and software, libraries and reference examples

A public release through GitHub or a similar source code hosting site of the format description together with software to use and convert the formats and links to reference examples hosted in the BIA

Risk Management Plan

A plan on how to monitor and manage risks exists and is made accessible

First stable BioImage Zoo Model format + software tools, libraries and reference examples.

Public release of the format specification for the BMZ model format together with example code and links to reference examples in the BMZ

Data Management Plan

The data management plan will be worked out and made accessible.

Strategy for dissemination of information within the consortium

Dissemination strategy within the consortium is established and agreed upon

Other (3)

Cloud infrastructure (accessible from the AI4LIFE website)

The cloud infrastructure is set up as described in Task 22

Notebooks and algorithms repository (accessible from the AI4LIFE website)

Notebooks to trainexecute models and supporting functionality eg for data handling will be available via a searchable repository on the AI4LIFE website Users can browse and launch them enabling them to apply any available method to their own data

Terms of service

Release of terms of service for users and contributors

Websites, patent fillings, videos etc. (1)

Plan for dissemination and exploitation including communication activities

The mandatory DEC

Publications

Peer reviewed articles (33)

Harnessing artificial intelligence to reduce phototoxicity in live imaging

Auteurs: Estibaliz Gómez-de-Mariscal, Mario Del Rosario, Joanna W. Pylvänäinen, Guillaume Jacquemet, Ricardo Henriques
Publié dans: Journal of Cell Science, Numéro 137, 2024, ISSN 0021-9533
Éditeur: The Company of Biologists
DOI: 10.1242/JCS.261545

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy

Auteurs: Daniel Krentzel, Matouš Elphick, Marie-Charlotte Domart, Christopher J. Peddie, Romain F. Laine, Cameron Shand, Ricardo Henriques, Lucy M. Collinson, Martin L. Jones
Publié dans: Nature Methods, Numéro 22, 2025, ISSN 1548-7091
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/S41592-025-02794-0

Building a FAIR image data ecosystem for microscopy communities

Auteurs: Kemmer, Isabel; Keppler, Antje; Serrano-Solano, Beatriz; Rybina, Arina; Özdemir, Bugra; Bischof, Johanna; El Ghadraoui, Ayoub; Eriksson, John E.; Mathur, Aastha
Publié dans: Histochem Cell Biol, 2023, ISSN 0948-6143
Éditeur: Springer Verlag
DOI: 10.1007/s00418-023-02203-7

Journal of Cell Science

Auteurs: Estibaliz Gómez-de-Mariscal; Mario Del Rosario; Joanna W. Pylvänäinen; Guillaume Jacquemet; Ricardo Henriques
Publié dans: Journal of Cell Science, 2024, ISSN 0021-9533
Éditeur: Journal of Cell Science
DOI: 10.48550/ARXIV.2308.04387

MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis

Auteurs: Teresa Zulueta-Coarasa, Florian Jug, Aastha Mathur, Josh Moore, Arrate Muñoz-Barrutia, Liviu Anita, Kolawole Babalola, Peter Bankhead, Perrine Gilloteaux, Nodar Gogoberidze, Martin L. Jones, Gerard J. Kleywegt, Paul Korir, Anna Kreshuk, Aybüke Küpcü Yoldaş, Luca Marconato, Kedar Narayan, Nils Norlin, Bugra Oezdemir, Jessica L. Riesterer, Craig Russell, Norman Rzepka, Ugis Sarkans, Beatriz Serrano-Solano, Christian Tischer, Virginie Uhlmann, Vladimír Ulman, Matthew Hartley
Publié dans: Nature Methods, 2025, ISSN 1548-7091
Éditeur: Springer Science and Business Media LLC
DOI: 10.48550/ARXIV.2311.10443

Nature Methods

Auteurs: Damian Dalle Nogare; Matthew Hartley; Joran Deschamps; Jan Ellenberg; Florian Jug
Publié dans: Nature Methods, 2023, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.1038/S41592-023-01929-5

FeatureForest: the power of foundation models, the usability of random forests

Auteurs: Mehdi Seifi; Damian Dalle Nogare; Juan Manuel Battagliotti; Vera Galinova; Ananya Kedige Rao; Pierre-Henri Jouneau; Anwai Archit; Fynn Beuttenmueller; Dorothea Dörr; Mariana G. Ferreira; Caterina Fuster-Barceló; Vera Galinova; Carlos García-López-de-Haro; Estibaliz Gómez-de-Mariscal; Matthew Hartley; Ricardo Henriques; Iván Hidalgo-Cenalmor; Florian Jug; Anna Kreshuk; Emma Lundberg; Nils Mechtel; Arrate Muñoz-Barrutia; Wei Ouyang; Constantin Pape; Craig T. Russell; Mehdi Seifi; Beatriz Serrano-Solano; Tomaz Vieira; Teresa Zulueta-Coarasa; Constantin Pape; Johan Decelle; Florian Jug; Joran Deschamps
Publié dans: npj Imaging, 2025, ISSN 2948-197X
Éditeur: Nature Publishing Group US
DOI: 10.1038/S44303-025-00089-9

Nature Communications

Auteurs: Christoph Spahn; Stuart Middlemiss; Estibaliz Gómez-de-Mariscal; Ricardo Henriques; Helge B. Bode; Séamus Holden; Mike Heilemann
Publié dans: Nature Communications, 2025, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.1038/S41467-025-58723-4

AI4Life Deliverable D5.3 - First stable BioImage Zoo Model format, software tools, libraries and reference examples

Auteurs: Ouyang, Wei; Hartley, Matthew
Publié dans: zenodo.org, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8296448

Gut Analysis Toolbox – automating quantitative analysis of enteric neurons

Auteurs: Luke Sorensen, Adam Humenick, Sabrina S. B. Poon, Myat Noe Han, Narges S. Mahdavian, Matthew C. Rowe, Ryan Hamnett, Estibaliz Gómez-de-Mariscal, Peter H. Neckel, Ayame Saito, Keith Mutunduwe, Christie Glennan, Robert Haase, Rachel M. McQuade, Jaime P. P. Foong, Simon J. H. Brookes, Julia A. Kaltschmidt, Arrate Muñoz-Barrutia, Sebastian K. King, Nicholas A. Veldhuis, Simona E. Carbone, Daniel P. Poole, Pradeep Rajasekhar
Publié dans: Journal of Cell Science, Numéro 137, 2024, ISSN 0021-9533
Éditeur: The Company of Biologists
DOI: 10.1242/JCS.261950

Nature Methods

Auteurs: Iván Hidalgo-Cenalmor; Joanna W. Pylvänäinen; Mariana G. Ferreira; Craig T. Russell; Alon Saguy; Ignacio Arganda-Carreras; Yoav Shechtman; Arrate Muñoz-Barrutia; Beatriz Serrano-Solano; Caterina Fuster Barcelo; Constantin Pape; Emma Lundberg; Florian Jug; Joran Deschamps; Mariana G. Ferreira; Matthew Hartley; Mehdi Seifi; Teresa Zulueta-Coarasa; Vera Galinova; Wei Ouyang; Guillaume Jacquemet; Ricardo Henriques; Estibaliz Gómez-de-Mariscal
Publié dans: Nature Methods, 2024, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.1101/2023.11.19.567606

Journal of Cell Science

Auteurs: Luke Sorensen; Adam Humenick; Sabrina S. B. Poon; Myat Noe Han; Narges S. Mahdavian; Matthew C. Rowe; Ryan Hamnett; Estibaliz Gómez-de-Mariscal; Peter H. Neckel; Ayame Saito; Keith Mutunduwe; Christie Glennan; Robert Haase; Rachel M. McQuade; Jaime P. P. Foong; Simon J. H. Brookes; Julia A. Kaltschmidt; Arrate Muñoz-Barrutia; Sebastian K. King; Nicholas A. Veldhuis; Simona E. Carbone; Daniel P. Poole; Pradeep Rajasekhar
Publié dans: Journal of Cell Science, 2024, ISSN 0021-9533
Éditeur: The Company of Biologists Ltd.
DOI: 10.1242/JCS.261950

Enabling global image data sharing in the life sciences

Auteurs: Peter Bajcsy, Sreenivas Bhattiprolu, Katy Börner, Beth A. Cimini, Lucy Collinson, Jan Ellenberg, Reto Fiolka, Maryellen Giger, Wojtek Goscinski, Matthew Hartley, Nathan Hotaling, Rick Horwitz, Florian Jug, Isabel Kemmer, Anna Kreshuk, Emma Lundberg, Aastha Mathur, Kedar Narayan, Shuichi Onami, Anne L. Plant, Fred Prior, Jason R. Swedlow, Adam Taylor, Antje Keppler
Publié dans: Nature Methods, Numéro 22, 2025, ISSN 1548-7091
Éditeur: Springer Science and Business Media LLC
DOI: 10.48550/ARXIV.2401.13023

Live-cell imaging in the deep learning era

Auteurs: Joanna W. Pylvänäinen, Estibaliz Gómez-de-Mariscal, Ricardo Henriques, Guillaume Jacquemet
Publié dans: Current Opinion in Cell Biology, Numéro 85, 2025, ISSN 0955-0674
Éditeur: Elsevier BV
DOI: 10.1016/J.CEB.2023.102271

Nature Methods

Auteurs: Christopher Schmied; Michael S. Nelson; Sergiy Avilov; Gert-Jan Bakker; Cristina Bertocchi; Johanna Bischof; Ulrike Boehm; Jan Brocher; Mariana T. Carvalho; Catalin Chiritescu; Jana Christopher; Beth A. Cimini; Eduardo Conde-Sousa; Michael Ebner; Rupert Ecker; Kevin Eliceiri; Julia Fernandez-Rodriguez; Nathalie Gaudreault; Laurent Gelman; David Grunwald; Tingting Gu; Nadia Halidi; Mathias Hammer; Matthew Hartley; Marie Held; Florian Jug; Varun Kapoor; Ayse Aslihan Koksoy; Judith Lacoste; Sylvia Le Dévédec; Sylvie Le Guyader; Penghuan Liu; Gabriel G. Martins; Aastha Mathur; Kota Miura; Paula Montero Llopis; Roland Nitschke; Alison North; Adam C. Parslow; Alex Payne-Dwyer; Laure Plantard; Rizwan Ali; Britta Schroth-Diez; Lucas Schütz; Ryan T. Scott; Arne Seitz; Olaf Selchow; Ved P. Sharma; Martin Spitaler; Sathya Srinivasan; Caterina Strambio-De-Castillia; Douglas Taatjes; Christian Tischer; Helena Klara Jambor
Publié dans: Nature Methods, 2023, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.5281/ZENODO.7956563

Nature Methods

Auteurs: Bruno M. Saraiva; Inês Cunha; António D. Brito; Gautier Follain; Raquel Portela; Robert Haase; Pedro M. Pereira; Guillaume Jacquemet; Ricardo Henriques
Publié dans: Nature Methods, 2025, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.1038/S41592-024-02562-6

BiaPy: accessible deep learning on bioimages

Auteurs: Daniel Franco-Barranco; Jesús A. Andrés-San Román; Ivan Hidalgo-Cenalmor; Lenka Backová; Aitor González-Marfil; Clément Caporal; Anatole Chessel; Pedro Gómez-Gálvez; Luis M. Escudero; Donglai Wei; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras
Publié dans: Nature Methods, 2024, ISSN 1548-7105
Éditeur: Nature Publishing Group US
DOI: 10.1101/2024.02.03.576026

Journal of Cell Science

Auteurs: Cimini, Beth; Bankhead, Peter; d'Antuono, Rocco; Fazeli, Elnaz; Fernandez-Rodriguez, Julia; Fuster-Barceló, Caterina; Haase, Robert; Jambor, Helena Klara; Jones, Martin; Jug, Florian; Klemm, Anna; Kreshuk, Anna; Marcotti, Stefania; Martins, Gabriel; Mcardle, Sara; Miura, Kota; Muñoz-Barrutia, Arrate; Murphy, Laura; Nelson, Michael; Nørrelykke, Simon; Paul-Gilloteaux, Perrine; Pengo, Thomas; Pylvänäinen, Joanna; Pytowski, Lior; Ravera, Arianna; Reinke, Annika; Rekik, Yousr; Strambio-De-Castillia, Caterina; Thédié, Daniel; Uhlmann, Virginie; Umney, Oliver; Wiggins, Laura; Eliceiri, Kevin
Publié dans: Journal of Cell Science, 2024, ISSN 0021-9533
Éditeur: The Company of Biologists Ltd.
DOI: 10.1242/JCS.262322

AI4Life Deliverable D5.1 - Annotation Standards

Auteurs: Hartley, Matthew; Zulueta-Coarasa, Teresa
Publié dans: zenodo.org, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8296393

Expansion and fluctuations-enhanced microscopy for nanoscale molecular profiling of cells and tissues

Auteurs: Dominik Kylies; Hannah S. Heil; Arturo G. Vesga; Mario Del Rosario; Maria Schwerk; Malte Kuehl; Milagros N. Wong; Victor G. Puelles; Ricardo Henriques
Publié dans: Nature Protocols, 2025, ISSN 1750-2799
Éditeur: Nature Protocols
DOI: 10.1038/S41596-025-01178-0

The crucial role of bioimage analysts in scientific research and publication

Auteurs: Beth A. Cimini, Peter Bankhead, Rocco D'Antuono, Elnaz Fazeli, Julia Fernandez-Rodriguez, Caterina Fuster-Barceló, Robert Haase, Helena Klara Jambor, Martin L. Jones, Florian Jug, Anna H. Klemm, Anna Kreshuk, Stefania Marcotti, Gabriel G. Martins, Sara McArdle, Kota Miura, Arrate Muñoz-Barrutia, Laura C. Murphy, Michael S. Nelson, Simon F. Nørrelykke, Perrine Paul-Gilloteaux, Thomas Pengo, Joanna W. Pylvänäinen, Lior Pytowski, Arianna Ravera, Annika Reinke, Yousr Rekik, Caterina Strambio-De-Castillia, Daniel Thédié, Virginie Uhlmann, Oliver Umney, Laura Wiggins, Kevin W. Eliceiri
Publié dans: Journal of Cell Science, Numéro 137, 2024, ISSN 0021-9533
Éditeur: The Company of Biologists
DOI: 10.1242/JCS.262322

Hijacking and integration of algal plastids and mitochondria in a polar planktonic host

Auteurs: Ananya Kedige Rao, Daniel Yee, Fabien Chevalier, Charlotte LeKieffre, Marie Pavie, Marine Olivetta, Omaya Dudin, Benoit Gallet, Elisabeth Hehenberger, Mehdi Seifi, Florian Jug, Joran Deschamps, Ting-Di Wu, Rebecca Gast, Pierre-Henri Jouneau, Johan Decelle
Publié dans: Current Biology, Numéro 35, 2025, ISSN 0960-9822
Éditeur: Elsevier BV
DOI: 10.1016/J.CUB.2025.03.076

Nature Communications

Auteurs: Afonso Mendes; Bruno M. Saraiva; Guillaume Jacquemet; João I. Mamede; Christophe Leterrier; Ricardo Henriques
Publié dans: Nature Communications, 2024, ISSN 2041-1723
Éditeur: Nature Publishing Group
DOI: 10.21203/RS.3.RS-5182329/V1

The rise of data‐driven microscopy powered by machine learning

Auteurs: Leonor Morgado, Estibaliz Gómez‐de‐Mariscal, Hannah S. Heil, Ricardo Henriques
Publié dans: Journal of Microscopy, Numéro 295, 2024, ISSN 0022-2720
Éditeur: Wiley
DOI: 10.1111/JMI.13282

AI4Life Deliverable D2.1 - Cloud infrastructure (accessible from the AI4Life website)

Auteurs: Ouyang, Wei
Publié dans: Zenodo, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.8380089

Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ

Auteurs: Caterina Fuster-Barceló; Carlos García López de Haro; Estibaliz Gómez-de-Mariscal; Wei Ouyang; Jean-Christophe Olivo-Marin; Daniel Sage; Arrate Muñoz-Barrutia
Publié dans: Biological Imaging, 2024, ISSN 2633-903X
Éditeur: Cambridge University Press
DOI: 10.1017/S2633903X24000114

This Microtubule Does Not Exist: Super‐Resolution Microscopy Image Generation by a Diffusion Model

Auteurs: Alon Saguy, Tav Nahimov, Maia Lehrman, Estibaliz Gómez‐de‐Mariscal, Iván Hidalgo‐Cenalmor, Onit Alalouf, Ashwin Balakrishnan, Mike Heilemann, Ricardo Henriques, Yoav Shechtman
Publié dans: Small Methods, Numéro 9, 2025, ISSN 2366-9608
Éditeur: Wiley
DOI: 10.1101/2023.07.06.548004

Building a FAIR image data ecosystem for microscopy communities

Auteurs: Kemmer, Isabel; Keppler, Antje; Serrano-Solano, Beatriz; Rybina, Arina; Özdemir, Bugra; Bischof, Johanna; El Ghadraoui, Ayoub; Eriksson, John E.; Mathur, Aastha
Publié dans: Histochemistry and Cell Biology, 2023, ISSN 1432-119X
Éditeur: Histochemistry and Cell Biology
DOI: 10.5281/ZENODO.7788899

Nature Methods

Auteurs: García López de Haro, Carlos; Dallongeville, Stéphane; Musset, Thomas; Gómez-De-Mariscal, Estibaliz; Sage, Daniel; Ouyang, Wei; Muñoz-Barrutia, Arrate; Tinevez, Jean-Yves; Olivo-Marin, Jean-Christophe
Publié dans: Nature Methods, 2024, ISSN 1548-7091
Éditeur: Nature Publishing Group
DOI: 10.48550/ARXIV.2306.04796

Moving beyond the desktop: prospects for practical bioimage analysis via the web

Auteurs: Wei Ouyang; Kevin W. Eliceiri; Beth A. Cimini
Publié dans: Frontiers in Bioinformatics, 2023, ISSN 2673-7647
Éditeur: Frontiers
DOI: 10.3389/fbinf.2023.1233748

CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data

Auteurs: Gómez-De-Mariscal, Estibaliz; Grobe, Hanna; Pylvänäinen, Joanna; Xénard, Laura; Henriques, Ricardo; Tinevez, Jean-Yves; Jacquemet, Guillaume
Publié dans: PLOS Biology, 2024, ISSN 1545-7885
Éditeur: PLOS
DOI: 10.1371/JOURNAL.PBIO.3002740

JDLL: A library to run Deep Learning models on Java bioimage informatics platforms

Auteurs: Carlos Garcia Lopez de Haro, Stephane Dallongeville, Thomas Musset, Estibaliz Gomez de Mariscal, Daniel Sage, Wei Ouyang, Arrate Munoz-Barrutia, Jean-Yves Tinevez, Jean-Christophe Olivo-Marin
Publié dans: arxiv.org, 2023
Éditeur: Arxiv
DOI: 10.48550/arXiv.2306.04796

BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging

Auteurs: Lei, Wanlu; Fuster-Barceló, Caterina; Reder, Gabriel; Muñoz-Barrutia, Arrate; Ouyang, Wei
Publié dans: Nature Methods, 2024, ISSN 1548-7105
Éditeur: Nature Publishing Group US
DOI: 10.5281/ZENODO.10967840

Other (24)

AI4Life Deliverable D2.2 - Deployment kit for user institutions to replicate the cloud infrastructure (accessible from the AI4Life website)

Auteurs: Ouyang, Wei; Russell, Craig
Publié dans: 2024
DOI: 10.5281/ZENODO.11085173

DeepContrast: Deep Tissue Contrast Enhancement using Synthetic Data Degradations and OOD Model Predictions

Auteurs: Martins, Nuno Pimpão; Kalaidzidis, Yannis; Zerial, Marino; Jug, Florian
Publié dans: 2023 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), 2023
Éditeur: 2023 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW)
DOI: 10.48550/ARXIV.2308.08365

AI4Life Deliverable D5.1 - Annotation standards and software, libraries and reference examples

Auteurs: Hartley, Matthew; Zulueta Coarasa, Teresa
Publié dans: 2023
DOI: 10.5281/zenodo.8296393

AI4Life & BioImage Archive FAIR AI Workshop - Summary of recommendations

Auteurs: Workshop participants
Publié dans: zenodo.org, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7681686

AI4Life Deliverable D4.2 - Deployment of a container system (accessible from the AI4Life website)

Auteurs: Henriques, Ricardo
Publié dans: 2024
DOI: 10.5281/ZENODO.10948859

AI4Life Deliverable D7.1 - Plan for dissemination and exploitation including communication activities

Auteurs: Serrano-Solano, Beatriz
Publié dans: No journal title, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7785759

AI4Life - Policy Brief

Auteurs: Mathur, Aastha; Kreshuk, Anna; Jug, Florian; Serrano-Solano, Beatriz; Dörr, Dorothea
Publié dans: 2023
Éditeur: ZENODO
DOI: 10.5281/ZENODO.10212907

AI4Life Deliverable D1.3 - Risk Management Plan

Auteurs: Robinson-Lehtinen, Rachel
Publié dans: 2023
DOI: 10.5281/zenodo.7786437

AI4Life Deliverable D4.1 - Notebooks and algorithms repository (accessible from the AI4Life website)

Auteurs: Henriques, Ricardo; Gómez de Mariscal, Estibaliz; Hidalgo, Iván
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/ZENODO.7987775

BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis

Auteurs: Wei Ouyang, Fynn Beuttenmueller, Estibaliz Gómez-de-Mariscal, Constantin Pape, Tom Burke, Carlos Garcia-López-de-Haro, Craig Russell, Lucía Moya-Sans, Cristina de-la-Torre-Gutiérrez, Deborah Schmidt, Dominik Kutra, Maksim Novikov, Martin Weigert, Uwe Schm
Publié dans: bioRxiv.org, 2022
Éditeur: bioRxiv
DOI: 10.1101/2022.06.07.495102V1

Outcomes of the Hackathon on Web and Cloud Infrastructure for AI-Powered BioImage Analysis

Auteurs: Caterina Fuster-Barceló,
Publié dans: Focal Plane, 2023
Éditeur: FocalPlane

NanoPyx: super-fast bioimage analysis powered by adaptive machine learning

Auteurs: Bruno M. Saraiva, Inês M. Cunha, António D. Brito, Gautier Follain, Raquel Portela, Robert Haase, Pedro M. Pereira, Guillaume Jacquemet, Ricardo Henriques
Publié dans: bioRxiv.org, 2023
Éditeur: bioRxiv
DOI: 10.1101/2023.08.13.553080V1

Roadmap on Deep Learning for Microscopy

Auteurs: Giovanni Volpe, Carolina Wählby, Lei Tian, et al.
Publié dans: arxiv.org, 2023
Éditeur: Arxiv
DOI: 10.48550/ARXIV.2303.03793

AI4Life Deliverable D7.1 - Plan for dissemination and exploitation including communication activities

Auteurs: Serrano-Solano, Beatriz
Publié dans: 2023
DOI: 10.5281/zenodo.7785759

AI4Life Deliverable D1.4 - Data Management Plan

Auteurs: Kreshuk, Anna; Hartley, Matthew
Publié dans: No journal title, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7785654

AI4Life Deliverable D3.1 - Terms of Service

Auteurs: Fuster Barcelo, Caterina; Muñoz-Barrutia, Arrate
Publié dans: 2023
Éditeur: Zenodo
DOI: 10.5281/ZENODO.7785511

AI4Life Deliverable D4.1 - Notebooks and algorithms repository (accessible from the AI4Life website)

Auteurs: Henriques, Ricardo; Gómez de Mariscal, Estibaliz; Hidalgo, Iván
Publié dans: 2023
DOI: 10.5281/zenodo.7987775

BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis

Auteurs: Wei Ouyang; Fynn Beuttenmueller; Estibaliz Gómez-de-Mariscal; Constantin Pape; Tom Burke; Carlos Garcia-López-de-Haro; Craig Russell; Lucía Moya-Sans; Cristina de-la-Torre-Gutiérrez; Deborah Schmidt; Dominik Kutra; Maksim Novikov; Martin Weigert; Uwe Schmidt; Peter Bankhead; Guillaume Jacquemet; Daniel Sage; Ricardo Henriques; Arrate Muñoz-Barrutia; Emma Lundberg; Florian Jug; Anna Kreshuk
Publié dans: bioRxiv -, 2022
DOI: 10.1101/2022.06.07.495102

AI4Life Deliverable D1.3 - Risk Management Plan

Auteurs: Robinson-Lehtinen, Rachel
Publié dans: AI4LIFE, Numéro 1.3, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7786437

Community-developed checklists for publishing images and image analysis

Auteurs: Schmied, Christopher; Nelson, Michael; Avilov, Sergiy; Bakker, Gert-Jan; Bertocchi, Cristina; Bischof, Johanna; Boehm, Ulrike; Brocher, Jan; Carvalho, Mariana; Chiritescu, Catalin; Christopher, Jana; Cimini, Beth; Conde-Sousa, Eduardo; Ebner, Michael; Ecker, Rupert; Eliceiri, Kevin; Fernandez-Rodriguez, Julia; Gaudreault, Nathalie; Gelman, Laurent; Grunwald, David; Gu, Tingting; Halidi, Nadia; Hammer, Mathias; Hartley, Matthew; Held, Marie; Jug, Florian; Kapoor, Varun; Koksoy, Ayse Aslihan; Lacoste, Judith; Dévédec, Sylvia Le; Guyader, Sylvie Le; Liu, Penghuan; Martins, Gabriel; Mathur, Aastha; Miura, Kota; Llopis, Paula Montero; Nitschke, Roland; North, Alison; Parslow, Adam; Payne-Dwyer, Alex; Plantard, Laure; Rizwan, Ali; Schroth-Diez, Britta; Schütz, Lucas; Scott, Ryan T.; Seitz, Arne; Selchow, Olaf; Sharma, Ved; Spitaler, Martin; Srinivasan, Sathya; De Castillia, Caterina Strambio; Taatjes, Douglas; Tischer, Christian; Jambor, Helena Klara
Publié dans: 2023
Éditeur: Arxiv
DOI: 10.48550/ARXIV.2302.07005

Harnessing Artificial Intelligence To Reduce Phototoxicity in Live Imaging

Auteurs: Estibaliz Gómez-de-Mariscal, Mario Del Rosario, Joanna W Pylvänäinen, Guillaume Jacquemet, Ricardo Henriques
Publié dans: arxiv.org, 2024
Éditeur: Arxiv
DOI: 10.1242/jcs.261545

AI4Life Deliverable D1.1 - Report on the establishment of the project management procedures and the executive group

Auteurs: Robinson-Lehtinen, Rachel
Publié dans: AI4LIFE, Numéro 1.1, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7786366

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Auteurs: Ouyang, Wei
Publié dans: Zenodo, 2023
DOI: 10.5281/ZENODO.8380089

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Auteurs: Robinson-Lehtinen, Rachel
Publié dans: AI4Life, Numéro D1.2, 2023
Éditeur: Zenodo
DOI: 10.5281/zenodo.7785849