Artificial Intelligence for Image Data Analysis in the Life Sciences

Informacje na temat projektu

AI4LIFE

Identyfikator umowy o grant: 101057970

DOI

10.3030/101057970

Projekt został zamknięty

Data podpisania przez KE 31 Maja 2022

Data rozpoczęcia 1 Września 2022

Data zakończenia 31 Sierpnia 2025

Finansowanie w ramach

• Research infrastructures

Koszt całkowity

€ 4 141 167,53

Wkład UE

€ 4 141 166,00

Koordynowany przez

EURO-BIOIMAGING ERIC
Finland

CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.

Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .

Rezultaty

Documents, reports (6)

Report on establishment of project management procedures and executive group

All project management procedures are established and the Executive Board is assembled

Annotation standards and software, libraries and reference examples

A public release through GitHub or a similar source code hosting site of the format description together with software to use and convert the formats and links to reference examples hosted in the BIA

Risk Management Plan

A plan on how to monitor and manage risks exists and is made accessible

First stable BioImage Zoo Model format + software tools, libraries and reference examples.

Public release of the format specification for the BMZ model format together with example code and links to reference examples in the BMZ

Data Management Plan

The data management plan will be worked out and made accessible.

Strategy for dissemination of information within the consortium

Dissemination strategy within the consortium is established and agreed upon

Other (3)

Cloud infrastructure (accessible from the AI4LIFE website)

The cloud infrastructure is set up as described in Task 22

Notebooks and algorithms repository (accessible from the AI4LIFE website)

Notebooks to trainexecute models and supporting functionality eg for data handling will be available via a searchable repository on the AI4LIFE website Users can browse and launch them enabling them to apply any available method to their own data

Terms of service

Release of terms of service for users and contributors

Websites, patent fillings, videos etc. (1)

Plan for dissemination and exploitation including communication activities

The mandatory DEC

Publikacje

Peer reviewed articles (33)

Harnessing artificial intelligence to reduce phototoxicity in live imaging

Autorzy: Estibaliz Gómez-de-Mariscal, Mario Del Rosario, Joanna W. Pylvänäinen, Guillaume Jacquemet, Ricardo Henriques
Opublikowane w: Journal of Cell Science, Numer 137, 2024, ISSN 0021-9533
Wydawca: The Company of Biologists
DOI: 10.1242/JCS.261545

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy

Autorzy: Daniel Krentzel, Matouš Elphick, Marie-Charlotte Domart, Christopher J. Peddie, Romain F. Laine, Cameron Shand, Ricardo Henriques, Lucy M. Collinson, Martin L. Jones
Opublikowane w: Nature Methods, Numer 22, 2025, ISSN 1548-7091
Wydawca: Springer Science and Business Media LLC
DOI: 10.1038/S41592-025-02794-0

Building a FAIR image data ecosystem for microscopy communities

Autorzy: Kemmer, Isabel; Keppler, Antje; Serrano-Solano, Beatriz; Rybina, Arina; Özdemir, Bugra; Bischof, Johanna; El Ghadraoui, Ayoub; Eriksson, John E.; Mathur, Aastha
Opublikowane w: Histochem Cell Biol, 2023, ISSN 0948-6143
Wydawca: Springer Verlag
DOI: 10.1007/s00418-023-02203-7

Journal of Cell Science

Autorzy: Estibaliz Gómez-de-Mariscal; Mario Del Rosario; Joanna W. Pylvänäinen; Guillaume Jacquemet; Ricardo Henriques
Opublikowane w: Journal of Cell Science, 2024, ISSN 0021-9533
Wydawca: Journal of Cell Science
DOI: 10.48550/ARXIV.2308.04387

MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis

Autorzy: Teresa Zulueta-Coarasa, Florian Jug, Aastha Mathur, Josh Moore, Arrate Muñoz-Barrutia, Liviu Anita, Kolawole Babalola, Peter Bankhead, Perrine Gilloteaux, Nodar Gogoberidze, Martin L. Jones, Gerard J. Kleywegt, Paul Korir, Anna Kreshuk, Aybüke Küpcü Yoldaş, Luca Marconato, Kedar Narayan, Nils Norlin, Bugra Oezdemir, Jessica L. Riesterer, Craig Russell, Norman Rzepka, Ugis Sarkans, Beatriz Serrano-Solano, Christian Tischer, Virginie Uhlmann, Vladimír Ulman, Matthew Hartley
Opublikowane w: Nature Methods, 2025, ISSN 1548-7091
Wydawca: Springer Science and Business Media LLC
DOI: 10.48550/ARXIV.2311.10443

Nature Methods

Autorzy: Damian Dalle Nogare; Matthew Hartley; Joran Deschamps; Jan Ellenberg; Florian Jug
Opublikowane w: Nature Methods, 2023, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/S41592-023-01929-5

FeatureForest: the power of foundation models, the usability of random forests

Autorzy: Mehdi Seifi; Damian Dalle Nogare; Juan Manuel Battagliotti; Vera Galinova; Ananya Kedige Rao; Pierre-Henri Jouneau; Anwai Archit; Fynn Beuttenmueller; Dorothea Dörr; Mariana G. Ferreira; Caterina Fuster-Barceló; Vera Galinova; Carlos García-López-de-Haro; Estibaliz Gómez-de-Mariscal; Matthew Hartley; Ricardo Henriques; Iván Hidalgo-Cenalmor; Florian Jug; Anna Kreshuk; Emma Lundberg; Nils Mechtel; Arrate Muñoz-Barrutia; Wei Ouyang; Constantin Pape; Craig T. Russell; Mehdi Seifi; Beatriz Serrano-Solano; Tomaz Vieira; Teresa Zulueta-Coarasa; Constantin Pape; Johan Decelle; Florian Jug; Joran Deschamps
Opublikowane w: npj Imaging, 2025, ISSN 2948-197X
Wydawca: Nature Publishing Group US
DOI: 10.1038/S44303-025-00089-9

Nature Communications

Autorzy: Christoph Spahn; Stuart Middlemiss; Estibaliz Gómez-de-Mariscal; Ricardo Henriques; Helge B. Bode; Séamus Holden; Mike Heilemann
Opublikowane w: Nature Communications, 2025, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/S41467-025-58723-4

AI4Life Deliverable D5.3 - First stable BioImage Zoo Model format, software tools, libraries and reference examples

Autorzy: Ouyang, Wei; Hartley, Matthew
Opublikowane w: zenodo.org, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.8296448

Gut Analysis Toolbox – automating quantitative analysis of enteric neurons

Autorzy: Luke Sorensen, Adam Humenick, Sabrina S. B. Poon, Myat Noe Han, Narges S. Mahdavian, Matthew C. Rowe, Ryan Hamnett, Estibaliz Gómez-de-Mariscal, Peter H. Neckel, Ayame Saito, Keith Mutunduwe, Christie Glennan, Robert Haase, Rachel M. McQuade, Jaime P. P. Foong, Simon J. H. Brookes, Julia A. Kaltschmidt, Arrate Muñoz-Barrutia, Sebastian K. King, Nicholas A. Veldhuis, Simona E. Carbone, Daniel P. Poole, Pradeep Rajasekhar
Opublikowane w: Journal of Cell Science, Numer 137, 2024, ISSN 0021-9533
Wydawca: The Company of Biologists
DOI: 10.1242/JCS.261950

Nature Methods

Autorzy: Iván Hidalgo-Cenalmor; Joanna W. Pylvänäinen; Mariana G. Ferreira; Craig T. Russell; Alon Saguy; Ignacio Arganda-Carreras; Yoav Shechtman; Arrate Muñoz-Barrutia; Beatriz Serrano-Solano; Caterina Fuster Barcelo; Constantin Pape; Emma Lundberg; Florian Jug; Joran Deschamps; Mariana G. Ferreira; Matthew Hartley; Mehdi Seifi; Teresa Zulueta-Coarasa; Vera Galinova; Wei Ouyang; Guillaume Jacquemet; Ricardo Henriques; Estibaliz Gómez-de-Mariscal
Opublikowane w: Nature Methods, 2024, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1101/2023.11.19.567606

Journal of Cell Science

Autorzy: Luke Sorensen; Adam Humenick; Sabrina S. B. Poon; Myat Noe Han; Narges S. Mahdavian; Matthew C. Rowe; Ryan Hamnett; Estibaliz Gómez-de-Mariscal; Peter H. Neckel; Ayame Saito; Keith Mutunduwe; Christie Glennan; Robert Haase; Rachel M. McQuade; Jaime P. P. Foong; Simon J. H. Brookes; Julia A. Kaltschmidt; Arrate Muñoz-Barrutia; Sebastian K. King; Nicholas A. Veldhuis; Simona E. Carbone; Daniel P. Poole; Pradeep Rajasekhar
Opublikowane w: Journal of Cell Science, 2024, ISSN 0021-9533
Wydawca: The Company of Biologists Ltd.
DOI: 10.1242/JCS.261950

Enabling global image data sharing in the life sciences

Autorzy: Peter Bajcsy, Sreenivas Bhattiprolu, Katy Börner, Beth A. Cimini, Lucy Collinson, Jan Ellenberg, Reto Fiolka, Maryellen Giger, Wojtek Goscinski, Matthew Hartley, Nathan Hotaling, Rick Horwitz, Florian Jug, Isabel Kemmer, Anna Kreshuk, Emma Lundberg, Aastha Mathur, Kedar Narayan, Shuichi Onami, Anne L. Plant, Fred Prior, Jason R. Swedlow, Adam Taylor, Antje Keppler
Opublikowane w: Nature Methods, Numer 22, 2025, ISSN 1548-7091
Wydawca: Springer Science and Business Media LLC
DOI: 10.48550/ARXIV.2401.13023

Live-cell imaging in the deep learning era

Autorzy: Joanna W. Pylvänäinen, Estibaliz Gómez-de-Mariscal, Ricardo Henriques, Guillaume Jacquemet
Opublikowane w: Current Opinion in Cell Biology, Numer 85, 2025, ISSN 0955-0674
Wydawca: Elsevier BV
DOI: 10.1016/J.CEB.2023.102271

Nature Methods

Autorzy: Christopher Schmied; Michael S. Nelson; Sergiy Avilov; Gert-Jan Bakker; Cristina Bertocchi; Johanna Bischof; Ulrike Boehm; Jan Brocher; Mariana T. Carvalho; Catalin Chiritescu; Jana Christopher; Beth A. Cimini; Eduardo Conde-Sousa; Michael Ebner; Rupert Ecker; Kevin Eliceiri; Julia Fernandez-Rodriguez; Nathalie Gaudreault; Laurent Gelman; David Grunwald; Tingting Gu; Nadia Halidi; Mathias Hammer; Matthew Hartley; Marie Held; Florian Jug; Varun Kapoor; Ayse Aslihan Koksoy; Judith Lacoste; Sylvia Le Dévédec; Sylvie Le Guyader; Penghuan Liu; Gabriel G. Martins; Aastha Mathur; Kota Miura; Paula Montero Llopis; Roland Nitschke; Alison North; Adam C. Parslow; Alex Payne-Dwyer; Laure Plantard; Rizwan Ali; Britta Schroth-Diez; Lucas Schütz; Ryan T. Scott; Arne Seitz; Olaf Selchow; Ved P. Sharma; Martin Spitaler; Sathya Srinivasan; Caterina Strambio-De-Castillia; Douglas Taatjes; Christian Tischer; Helena Klara Jambor
Opublikowane w: Nature Methods, 2023, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.5281/ZENODO.7956563

Nature Methods

Autorzy: Bruno M. Saraiva; Inês Cunha; António D. Brito; Gautier Follain; Raquel Portela; Robert Haase; Pedro M. Pereira; Guillaume Jacquemet; Ricardo Henriques
Opublikowane w: Nature Methods, 2025, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.1038/S41592-024-02562-6

BiaPy: accessible deep learning on bioimages

Autorzy: Daniel Franco-Barranco; Jesús A. Andrés-San Román; Ivan Hidalgo-Cenalmor; Lenka Backová; Aitor González-Marfil; Clément Caporal; Anatole Chessel; Pedro Gómez-Gálvez; Luis M. Escudero; Donglai Wei; Arrate Muñoz-Barrutia; Ignacio Arganda-Carreras
Opublikowane w: Nature Methods, 2024, ISSN 1548-7105
Wydawca: Nature Publishing Group US
DOI: 10.1101/2024.02.03.576026

Journal of Cell Science

Autorzy: Cimini, Beth; Bankhead, Peter; d'Antuono, Rocco; Fazeli, Elnaz; Fernandez-Rodriguez, Julia; Fuster-Barceló, Caterina; Haase, Robert; Jambor, Helena Klara; Jones, Martin; Jug, Florian; Klemm, Anna; Kreshuk, Anna; Marcotti, Stefania; Martins, Gabriel; Mcardle, Sara; Miura, Kota; Muñoz-Barrutia, Arrate; Murphy, Laura; Nelson, Michael; Nørrelykke, Simon; Paul-Gilloteaux, Perrine; Pengo, Thomas; Pylvänäinen, Joanna; Pytowski, Lior; Ravera, Arianna; Reinke, Annika; Rekik, Yousr; Strambio-De-Castillia, Caterina; Thédié, Daniel; Uhlmann, Virginie; Umney, Oliver; Wiggins, Laura; Eliceiri, Kevin
Opublikowane w: Journal of Cell Science, 2024, ISSN 0021-9533
Wydawca: The Company of Biologists Ltd.
DOI: 10.1242/JCS.262322

AI4Life Deliverable D5.1 - Annotation Standards

Autorzy: Hartley, Matthew; Zulueta-Coarasa, Teresa
Opublikowane w: zenodo.org, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.8296393

Expansion and fluctuations-enhanced microscopy for nanoscale molecular profiling of cells and tissues

Autorzy: Dominik Kylies; Hannah S. Heil; Arturo G. Vesga; Mario Del Rosario; Maria Schwerk; Malte Kuehl; Milagros N. Wong; Victor G. Puelles; Ricardo Henriques
Opublikowane w: Nature Protocols, 2025, ISSN 1750-2799
Wydawca: Nature Protocols
DOI: 10.1038/S41596-025-01178-0

The crucial role of bioimage analysts in scientific research and publication

Autorzy: Beth A. Cimini, Peter Bankhead, Rocco D'Antuono, Elnaz Fazeli, Julia Fernandez-Rodriguez, Caterina Fuster-Barceló, Robert Haase, Helena Klara Jambor, Martin L. Jones, Florian Jug, Anna H. Klemm, Anna Kreshuk, Stefania Marcotti, Gabriel G. Martins, Sara McArdle, Kota Miura, Arrate Muñoz-Barrutia, Laura C. Murphy, Michael S. Nelson, Simon F. Nørrelykke, Perrine Paul-Gilloteaux, Thomas Pengo, Joanna W. Pylvänäinen, Lior Pytowski, Arianna Ravera, Annika Reinke, Yousr Rekik, Caterina Strambio-De-Castillia, Daniel Thédié, Virginie Uhlmann, Oliver Umney, Laura Wiggins, Kevin W. Eliceiri
Opublikowane w: Journal of Cell Science, Numer 137, 2024, ISSN 0021-9533
Wydawca: The Company of Biologists
DOI: 10.1242/JCS.262322

Hijacking and integration of algal plastids and mitochondria in a polar planktonic host

Autorzy: Ananya Kedige Rao, Daniel Yee, Fabien Chevalier, Charlotte LeKieffre, Marie Pavie, Marine Olivetta, Omaya Dudin, Benoit Gallet, Elisabeth Hehenberger, Mehdi Seifi, Florian Jug, Joran Deschamps, Ting-Di Wu, Rebecca Gast, Pierre-Henri Jouneau, Johan Decelle
Opublikowane w: Current Biology, Numer 35, 2025, ISSN 0960-9822
Wydawca: Elsevier BV
DOI: 10.1016/J.CUB.2025.03.076

Nature Communications

Autorzy: Afonso Mendes; Bruno M. Saraiva; Guillaume Jacquemet; João I. Mamede; Christophe Leterrier; Ricardo Henriques
Opublikowane w: Nature Communications, 2024, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.21203/RS.3.RS-5182329/V1

The rise of data‐driven microscopy powered by machine learning

Autorzy: Leonor Morgado, Estibaliz Gómez‐de‐Mariscal, Hannah S. Heil, Ricardo Henriques
Opublikowane w: Journal of Microscopy, Numer 295, 2024, ISSN 0022-2720
Wydawca: Wiley
DOI: 10.1111/JMI.13282

AI4Life Deliverable D2.1 - Cloud infrastructure (accessible from the AI4Life website)

Autorzy: Ouyang, Wei
Opublikowane w: Zenodo, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.8380089

Bridging the Gap: Integrating Cutting-edge Techniques into Biological Imaging with deepImageJ

Autorzy: Caterina Fuster-Barceló; Carlos García López de Haro; Estibaliz Gómez-de-Mariscal; Wei Ouyang; Jean-Christophe Olivo-Marin; Daniel Sage; Arrate Muñoz-Barrutia
Opublikowane w: Biological Imaging, 2024, ISSN 2633-903X
Wydawca: Cambridge University Press
DOI: 10.1017/S2633903X24000114

This Microtubule Does Not Exist: Super‐Resolution Microscopy Image Generation by a Diffusion Model

Autorzy: Alon Saguy, Tav Nahimov, Maia Lehrman, Estibaliz Gómez‐de‐Mariscal, Iván Hidalgo‐Cenalmor, Onit Alalouf, Ashwin Balakrishnan, Mike Heilemann, Ricardo Henriques, Yoav Shechtman
Opublikowane w: Small Methods, Numer 9, 2025, ISSN 2366-9608
Wydawca: Wiley
DOI: 10.1101/2023.07.06.548004

Building a FAIR image data ecosystem for microscopy communities

Autorzy: Kemmer, Isabel; Keppler, Antje; Serrano-Solano, Beatriz; Rybina, Arina; Özdemir, Bugra; Bischof, Johanna; El Ghadraoui, Ayoub; Eriksson, John E.; Mathur, Aastha
Opublikowane w: Histochemistry and Cell Biology, 2023, ISSN 1432-119X
Wydawca: Histochemistry and Cell Biology
DOI: 10.5281/ZENODO.7788899

Nature Methods

Autorzy: García López de Haro, Carlos; Dallongeville, Stéphane; Musset, Thomas; Gómez-De-Mariscal, Estibaliz; Sage, Daniel; Ouyang, Wei; Muñoz-Barrutia, Arrate; Tinevez, Jean-Yves; Olivo-Marin, Jean-Christophe
Opublikowane w: Nature Methods, 2024, ISSN 1548-7091
Wydawca: Nature Publishing Group
DOI: 10.48550/ARXIV.2306.04796

Moving beyond the desktop: prospects for practical bioimage analysis via the web

Autorzy: Wei Ouyang; Kevin W. Eliceiri; Beth A. Cimini
Opublikowane w: Frontiers in Bioinformatics, 2023, ISSN 2673-7647
Wydawca: Frontiers
DOI: 10.3389/fbinf.2023.1233748

CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data

Autorzy: Gómez-De-Mariscal, Estibaliz; Grobe, Hanna; Pylvänäinen, Joanna; Xénard, Laura; Henriques, Ricardo; Tinevez, Jean-Yves; Jacquemet, Guillaume
Opublikowane w: PLOS Biology, 2024, ISSN 1545-7885
Wydawca: PLOS
DOI: 10.1371/JOURNAL.PBIO.3002740

JDLL: A library to run Deep Learning models on Java bioimage informatics platforms

Autorzy: Carlos Garcia Lopez de Haro, Stephane Dallongeville, Thomas Musset, Estibaliz Gomez de Mariscal, Daniel Sage, Wei Ouyang, Arrate Munoz-Barrutia, Jean-Yves Tinevez, Jean-Christophe Olivo-Marin
Opublikowane w: arxiv.org, 2023
Wydawca: Arxiv
DOI: 10.48550/arXiv.2306.04796

BioImage.IO Chatbot: a community-driven AI assistant for integrative computational bioimaging

Autorzy: Lei, Wanlu; Fuster-Barceló, Caterina; Reder, Gabriel; Muñoz-Barrutia, Arrate; Ouyang, Wei
Opublikowane w: Nature Methods, 2024, ISSN 1548-7105
Wydawca: Nature Publishing Group US
DOI: 10.5281/ZENODO.10967840

Other (24)

AI4Life Deliverable D2.2 - Deployment kit for user institutions to replicate the cloud infrastructure (accessible from the AI4Life website)

Autorzy: Ouyang, Wei; Russell, Craig
Opublikowane w: 2024
DOI: 10.5281/ZENODO.11085173

DeepContrast: Deep Tissue Contrast Enhancement using Synthetic Data Degradations and OOD Model Predictions

Autorzy: Martins, Nuno Pimpão; Kalaidzidis, Yannis; Zerial, Marino; Jug, Florian
Opublikowane w: 2023 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), 2023
Wydawca: 2023 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW)
DOI: 10.48550/ARXIV.2308.08365

AI4Life Deliverable D5.1 - Annotation standards and software, libraries and reference examples

Autorzy: Hartley, Matthew; Zulueta Coarasa, Teresa
Opublikowane w: 2023
DOI: 10.5281/zenodo.8296393

AI4Life & BioImage Archive FAIR AI Workshop - Summary of recommendations

Autorzy: Workshop participants
Opublikowane w: zenodo.org, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.7681686

AI4Life Deliverable D4.2 - Deployment of a container system (accessible from the AI4Life website)

Autorzy: Henriques, Ricardo
Opublikowane w: 2024
DOI: 10.5281/ZENODO.10948859

AI4Life Deliverable D7.1 - Plan for dissemination and exploitation including communication activities

Autorzy: Serrano-Solano, Beatriz
Opublikowane w: No journal title, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.7785759

AI4Life - Policy Brief

Autorzy: Mathur, Aastha; Kreshuk, Anna; Jug, Florian; Serrano-Solano, Beatriz; Dörr, Dorothea
Opublikowane w: 2023
Wydawca: ZENODO
DOI: 10.5281/ZENODO.10212907

AI4Life Deliverable D1.3 - Risk Management Plan

Autorzy: Robinson-Lehtinen, Rachel
Opublikowane w: 2023
DOI: 10.5281/zenodo.7786437

AI4Life Deliverable D4.1 - Notebooks and algorithms repository (accessible from the AI4Life website)

Autorzy: Henriques, Ricardo; Gómez de Mariscal, Estibaliz; Hidalgo, Iván
Opublikowane w: 2023
Wydawca: Zenodo
DOI: 10.5281/ZENODO.7987775

BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis

Autorzy: Wei Ouyang, Fynn Beuttenmueller, Estibaliz Gómez-de-Mariscal, Constantin Pape, Tom Burke, Carlos Garcia-López-de-Haro, Craig Russell, Lucía Moya-Sans, Cristina de-la-Torre-Gutiérrez, Deborah Schmidt, Dominik Kutra, Maksim Novikov, Martin Weigert, Uwe Schm
Opublikowane w: bioRxiv.org, 2022
Wydawca: bioRxiv
DOI: 10.1101/2022.06.07.495102V1

Outcomes of the Hackathon on Web and Cloud Infrastructure for AI-Powered BioImage Analysis

Autorzy: Caterina Fuster-Barceló,
Opublikowane w: Focal Plane, 2023
Wydawca: FocalPlane

NanoPyx: super-fast bioimage analysis powered by adaptive machine learning

Autorzy: Bruno M. Saraiva, Inês M. Cunha, António D. Brito, Gautier Follain, Raquel Portela, Robert Haase, Pedro M. Pereira, Guillaume Jacquemet, Ricardo Henriques
Opublikowane w: bioRxiv.org, 2023
Wydawca: bioRxiv
DOI: 10.1101/2023.08.13.553080V1

Roadmap on Deep Learning for Microscopy

Autorzy: Giovanni Volpe, Carolina Wählby, Lei Tian, et al.
Opublikowane w: arxiv.org, 2023
Wydawca: Arxiv
DOI: 10.48550/ARXIV.2303.03793

AI4Life Deliverable D7.1 - Plan for dissemination and exploitation including communication activities

Autorzy: Serrano-Solano, Beatriz
Opublikowane w: 2023
DOI: 10.5281/zenodo.7785759

AI4Life Deliverable D1.4 - Data Management Plan

Autorzy: Kreshuk, Anna; Hartley, Matthew
Opublikowane w: No journal title, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.7785654

AI4Life Deliverable D3.1 - Terms of Service

Autorzy: Fuster Barcelo, Caterina; Muñoz-Barrutia, Arrate
Opublikowane w: 2023
Wydawca: Zenodo
DOI: 10.5281/ZENODO.7785511

AI4Life Deliverable D4.1 - Notebooks and algorithms repository (accessible from the AI4Life website)

Autorzy: Henriques, Ricardo; Gómez de Mariscal, Estibaliz; Hidalgo, Iván
Opublikowane w: 2023
DOI: 10.5281/zenodo.7987775

BioImage Model Zoo: A Community-Driven Resource for Accessible Deep Learning in BioImage Analysis

Autorzy: Wei Ouyang; Fynn Beuttenmueller; Estibaliz Gómez-de-Mariscal; Constantin Pape; Tom Burke; Carlos Garcia-López-de-Haro; Craig Russell; Lucía Moya-Sans; Cristina de-la-Torre-Gutiérrez; Deborah Schmidt; Dominik Kutra; Maksim Novikov; Martin Weigert; Uwe Schmidt; Peter Bankhead; Guillaume Jacquemet; Daniel Sage; Ricardo Henriques; Arrate Muñoz-Barrutia; Emma Lundberg; Florian Jug; Anna Kreshuk
Opublikowane w: bioRxiv -, 2022
DOI: 10.1101/2022.06.07.495102

AI4Life Deliverable D1.3 - Risk Management Plan

Autorzy: Robinson-Lehtinen, Rachel
Opublikowane w: AI4LIFE, Numer 1.3, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.7786437

Community-developed checklists for publishing images and image analysis

Autorzy: Schmied, Christopher; Nelson, Michael; Avilov, Sergiy; Bakker, Gert-Jan; Bertocchi, Cristina; Bischof, Johanna; Boehm, Ulrike; Brocher, Jan; Carvalho, Mariana; Chiritescu, Catalin; Christopher, Jana; Cimini, Beth; Conde-Sousa, Eduardo; Ebner, Michael; Ecker, Rupert; Eliceiri, Kevin; Fernandez-Rodriguez, Julia; Gaudreault, Nathalie; Gelman, Laurent; Grunwald, David; Gu, Tingting; Halidi, Nadia; Hammer, Mathias; Hartley, Matthew; Held, Marie; Jug, Florian; Kapoor, Varun; Koksoy, Ayse Aslihan; Lacoste, Judith; Dévédec, Sylvia Le; Guyader, Sylvie Le; Liu, Penghuan; Martins, Gabriel; Mathur, Aastha; Miura, Kota; Llopis, Paula Montero; Nitschke, Roland; North, Alison; Parslow, Adam; Payne-Dwyer, Alex; Plantard, Laure; Rizwan, Ali; Schroth-Diez, Britta; Schütz, Lucas; Scott, Ryan T.; Seitz, Arne; Selchow, Olaf; Sharma, Ved; Spitaler, Martin; Srinivasan, Sathya; De Castillia, Caterina Strambio; Taatjes, Douglas; Tischer, Christian; Jambor, Helena Klara
Opublikowane w: 2023
Wydawca: Arxiv
DOI: 10.48550/ARXIV.2302.07005

Harnessing Artificial Intelligence To Reduce Phototoxicity in Live Imaging

Autorzy: Estibaliz Gómez-de-Mariscal, Mario Del Rosario, Joanna W Pylvänäinen, Guillaume Jacquemet, Ricardo Henriques
Opublikowane w: arxiv.org, 2024
Wydawca: Arxiv
DOI: 10.1242/jcs.261545

AI4Life Deliverable D1.1 - Report on the establishment of the project management procedures and the executive group

Autorzy: Robinson-Lehtinen, Rachel
Opublikowane w: AI4LIFE, Numer 1.1, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.7786366

AI4Life Deliverable D2.1 - Cloud infrastructure (accessible from the AI4Life website)

Autorzy: Ouyang, Wei
Opublikowane w: Zenodo, 2023
DOI: 10.5281/ZENODO.8380089

AI4Life Deliverable D1.2 - Strategy for dissemination of information within the consortium

Autorzy: Robinson-Lehtinen, Rachel
Opublikowane w: AI4Life, Numer D1.2, 2023
Wydawca: Zenodo
DOI: 10.5281/zenodo.7785849