Biodiversity Genomics Europe

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

European Barcoding Node Business Plan

Long-term business plan for the European node of iBOL.

Species prioritisation for genome sequencing

Priority lists of species selected for sampling in WP5 and WP12 based on a gap analysis of available reference genomes for European biodiversity and a feasibility evaluation, serves as guideline for general prioritisation in genome sequencing consortia.

Conservation genomics case studies

Report showcasing the application of genomics for species of conservation concern developed in the Project.

Reference barcode sequence report

Report summarising the sequence data generated from 45,000 specimens supplied by WP4.

Communication Impact Assessment Report

Report summarising an assessment of communication reach from the Project, including media/social media coverage and stakeholder awareness evaluation.

Metadata collection standards

Produce standard metadata collection sheets to be used by participants in the Project.

Engagement practices and results

Brief on stakeholders and public engagement practices and results.

European barcode reference libraries

Report on the completed curation of European DNA barcode reference libraries [T101]

Reference genome annotation

Reference genome annotations complete with per species repeat libraries, annotation and masking of repeat features delivered through Ensembl Rapid Release and ENA. This will include the incorporation of reproducible community annotation and quality control workflows to generate annotation QC metrics.

BGE Knowledge Platform

Establishment of an online knowledge resource synthesising and communicating Project outputs and key findings.

Biobanking standards

Definition of biobanking standards and guidelines for the Project, with option for central biobank storage.

Multi-locus sequence dataset

Report summarising multi-locus sequence data for assessing intra- and inter-specific variation.

Open repository of genomics protocols

Report on methodologies deployed, on resource utilisation and summaries of the content of the open repository of protocols and SOPs for DNA and RNA extraction and sequencing across European biodiversity, especially focused on variant and improved protocols for taxa where extraction and sequencing proved challenging.

SOPs karyotyping, genome size, cell culturing

SOPs for karyotyping, genome size estimation and cell culturing and maintenance of frozen archives.

Metadata change management implementations

Report showcasing the developed metadata change management tools that support the tracking of data through ERGA and BIOSCAN Europe workflows.

European biodiversity genomics Policy Panel

Set-up and operation of the European Biodiversity Genomics Panel.

Genome assembly/quality control tools

State-of-the-art genome assembly and quality control tools packaged in openly accessible computational workflows for use by in-Project partners and the wider genomics community.

Scientific direction for ERGA establishment

Report detailing progress on developing and implementing formal scientific and science+ direction and guidance for building the network to deliver high-quality reference genomes for European biodiversity in a distributed manner.

National node operational models report

Report evaluating models for theorganisation of national-level capacity for barcoding communities.

Multi-locus barcoding protocol

Report describing a workflow for developing and implementing multi-locus barcoding panels.

Future-proofing dark taxa samples

SOP to support vouchers, barcodes, and reference genomes on very small arthropods.

Aquatic field sampling

Report documenting samples collected for reference library barcoding and eDNA samples collected from marine ports for biomonitoring.

Instance of BOLD Europe

Set-up an operational instance of BOLD in Europe.

Infrastructure design study

Delivery of a design and implementation study for future scaling up joint operations as a distributed infrastructure.

Developed FAIR data infrastructures

Report detailing genomics data and metadata management systems that support ERGA and BIOSCAN Europe data workflows.

Deliver advanced BOLD Europe functionality

Performant, functionalityenhanced, EU-located instance of BOLD Europe.

Formalisation of ERGA

Report detailing progress on supporting the development of ERGA activities and the formal agreement on ERGA’s legal status and establishment as the European node of the EBP.

Prioritisation guidelines for the wider community

This report will detail plans that guide species selection for the duration of the project and other consortia in the wider biodiversity genomics (BioGenomes) community.

Material for genome sequencing critical European biodiversity

150-200 species submitted to sequencing centres, vouchered in biobanks and museums and metadata completed.

Coordinated planning for efficient scaling up

Report detailing plans to build a coherent set of actions for effective alignments of the short- mid- and long-term goals for scaling up reference genome establishment including profiling of community needs and knowledge gained during the Project.

Genomics Table of Policies (GeTAP)

Web-based matrix of the components of the GeTAP.

BOLD Europe design study

A consensus report on the future architecture and implementation steps of the BOLD Europe instance.

Joint training activities

Report describing the development of genomic applications for species of economic importance and disease control.

Biobanking and sample storage

Proper biobanking and storage of all samples (including cell cultures where applicable) for WP5 with establishment of standards at involved institutions.

Museum specimen sampling

Report detailing the species and specimens delivered to sequencing centres for DNA barcoding.

ERGA Public Data Portal

An ERGA public data portal to collate all ERGA metadata and data into a FAIR open access website, complete with species status tracking at the sample and sequence level provided by the COPO data brokering infrastructure and the EMBL-EBI ENA.

Data for 450 Gb of reference genomes

Report summarising delivery metrics for WP.7

Monitoring process report

Report on the monitoring process and mitigation actions taken through the Project, in relation to ethical matters.

Developed intraspecific monitoring tools

Report/Paper: workflow for integrating genomic information to build monitoring tools for intraspecific genetic diversity.

Material for genome sequencing European biodiversity hotspots

150-200 species (providing ca. 200Gbp genome assembly span, further material for future extension) submitted to sequencing centres, vouchered in biobanks and museums and metadata completed.

Deposit reference barcodes

Report summarising 45,000 new barcodes (generated in WP6) deposited in BOLD and ENA.

Metabarcode denoising pipelines

Optimised pipelines for the denoising of bulk sample metabarcoding data for reliable species inventory and haplotype recovery within species.

Gap analysis report

Report summarising results from all DNA barcoding gap analyses throughout the Project, including the success rate for specimen tracing in museum collections and field sites.

Metabarcoding QC report

Quality control report for sequence data generated from the 5000 bulk / eDNA samples supplied by WP4.

Bioeconomy and disease control case studies

This report will describe the development of genomic applications for species of economic importance and disease control.

Terrestrial field sampling

Report documenting the sampling for barcoding and metabarcoding, proposing methodological guidelines for standardisation of field sampling for biomonitoring of terrestrial habitats using DNA metabarcoding.

Training and engagement activities

Report cataloguing activities delivered as part of the ERGA community TKT and citizen engagement actions as well as the future priority support areas.

Metadata collection and transfer, samples coordination

Oversight of specimen collection, storage, and sample transfer together with metadata documentation and exchange based on to be extended and implemented SOPs.

BGE Conference

End of Project major conference connecting the outputs of the Project to biodiversity and environmental stakeholders.

Developed genomics application toolkits

Report demonstrating how case tudies of the Project and networking activities contributed to fully implement genomics in biodiversity applications toolkits.

Population-level sample collection

Report summarising all population-level ollinator sampling efforts and delivered samples.

Reference genome assembly submission

Report summarizing delivery metrics for approximately 350-500 genomes of European target species submitted to the ENA and approved for public release.

Biomonitoring harmonisation and standardisation

Report on tutorials, reproducible pipelines, and suggestions for harmonisation and standardisation of DNA barcoding biomonitoring pipelines.

Citizen Science Engagement Website

Website providing feedback and visibility to the citizen science contributors and acting as platform for wider citizen science engagement, and providing a hub for natural history societies/individual experts who are keen to connect with the Project.

Online Barcode Information Portal

Full release of content-rich online platform providing a nexus for the DNA barcoding community in Europe.

Publications

The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

Auteurs: Kessy Abarenkov, R Henrik Nilsson, Karl-Henrik Larsson, Andy F S Taylor, Tom W May, Tobias Guldberg Frøslev, Julia Pawlowska, Björn Lindahl, Kadri Põldmaa, Camille Truong, Duong Vu, Tsuyoshi Hosoya, Tuula Niskanen, Timo Piirmann, Filipp Ivanov, Allan Zirk
Publié dans: Nucleic Acids Research, Numéro 52, 2023, ISSN 1362-4962
Éditeur: Nucleic Acids Research
DOI: 10.1093/nar/gkad1039

Building a Portuguese coalition for biodiversity genomics

Auteurs: João P. Marques, Paulo C. Alves, Isabel R. Amorim, Ricardo J. Lopes, Monica Moura, Eugene Myers, Manuela Sim-sim, Carla Sousa-Santos, M. Judite Alves, Paulo A. V. Borges, Thomas Brown, Miguel Carneiro, Carlos Carrapato, Luís M. P. Ceríaco, Claúdio Ciofi, Luís P. da Silva, Genevieve Diedericks, Maria Angela Diroma, Liliana Farelo, Giulio Formenti, Fátima Gil, Miguel Grilo, Alessio Iannucci, Henrique G. Leitão, Cristina Máguas, Ann M. Mc Cartney, Sofia L. Mendes, João M. Moreno, Marco Morselli, Alice Mouton, Chiara Natali, Fernando Pereira, Rúben M. C. Rego, Roberto Resendes, Guilherme Roxo, Hannes Svardal, Helena Trindade, Sara Vicente, Sylke Winkler, Marcela Alvarenga, Andreia J. Amaral, Agostinho Antunes, Paula F. Campos, Adelino V. M. Canário, Rita Castilho, L. Filipe C. Castro, Angelica Crottini, Mónica V. Cunha, Gonçalo Espregueira Themudo, Pedro J. Esteves, Rui Faria, Carlos Rodríguez Fernandes, Jean-Baptiste Ledoux, Bruno Louro, Sara Magalhaes, Octávio S. Paulo, Gareth Pearson, João Pimenta, Francisco Pina-Martins, Teresa L. Santos, Ester Serrão, José Melo-Ferreira, Vítor C. Sousa
Publié dans: npj Biodiversity, Numéro 3, 2024, ISSN 2731-4243
Éditeur: Springer Science and Business Media LLC
DOI: 10.1038/S44185-024-00061-7

ERGA-BGE genome of Acomys minous (Bate, 1906): the Crete spiny mouse, endemic to the island of Crete, Greece

Auteurs: Petros Lymberakis, Danae Karakasi, Manolis Papadimitrakis, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Jean-Marc Aury, Alice Moussy, Corinne Cruaud, Karine Labadie, Sophie Mangenot, Caroline Belser, Lola Demirdjian, Swati Sinha, Leanne Haggerty, Fergal Martin, Patrick Wincker, Pedro H. Oliveira, Tom Brown
Publié dans: 2025
Éditeur: Pensoft Publishers
DOI: 10.3897/ARPHAPREPRINTS.E153920

ERGA-BGE reference genome of Xylophaga dorsalis - a common deep-sea wood-boring bivalve with Atlantic-Mediterranean distribution

Auteurs: Sergi Taboada; Carlota Gracia-Sancha; Carles Galià-Camps; Astrid Böhne; Rita Monteiro; Thomas Marcussen; Rebekah A. Oomen; Torsten H. Struck; Marta Gut; Laura Aguilera; Francisco Câmara Ferreira; Fernando Cruz; Jèssica Gómez-Garrido; Tyler S. Alioto; Fergal Martin; Anna Lazar; Leanne Haggerty; Chiara Bortoluzzi
Publié dans: Open Research Europe, 2026, ISSN 2732-5121
Éditeur: ORE
DOI: 10.5281/ZENODO.19052213

ERGA-BGE Reference Genome of the Northern chamois (Rupicapra rupicapra): Europe’s most abundant mountain ungulate

Auteurs: Elena Buzan, Aja Bončina, Boštjan Pokorny, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Leanne Haggerty, Fergal Martin, Diego De Panis
Publié dans: 2024
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.11.20.624344

ERGA-BGE Genome of Ailoscolex lacteospumosus Bouché, 1969 – the enigmatic milky worm endemic to the Pyrenees

Auteurs: Marta Novo, Daniel Fernández Marchán, Sylvain Gérard, Alejandro Martínez Navarro, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten H Struck, Rebekah A Oomen, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Tyler Alioto, Anna Lazar, Leanne Haggerty, Fergal Martin, Tom Brown
Publié dans: Open Research Europe, Numéro 6, 2026, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.5281/ZENODO.19852044

Taxonomic position of Tetrops peterkai Skořepa, 2020 (Сoleoptera: Сerambycidae) and its cryptic distribution

Auteurs: Andrew Zamoroka, Oleksandr Zinenko
Publié dans: Journal of Vasyl Stefanyk Precarpathian National University. Biology, Numéro 11, 2025, ISSN 3083-662X
Éditeur: Vasyl Stefanyk Precarpathian National University
DOI: 10.15330/JPNUBIO.11.6-19

Ensembl 2025

Auteurs: Sarah C Dyer, Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes, Vianey Paola Barrera-Enriquez, Arne Becker, Ruth Bennett, Martin Beracochea, Andrew Berry, Jyothish Bhai, Simarpreet Kaur Bhurji, Sanjay Boddu, Paulo R Branco Lins, Lucy Brooks, Shashank Budhanuru Ramaraju, Lahcen I Campbell, Manuel Carbajo Martinez, Mehrnaz Charkhchi, Lucas A Cortes, Claire Davidson, Sukanya Denni, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Oluwadamilare Falola, Reham Fatima, Thiago Genez, Jose Gonzalez Martinez, Tatiana Gurbich, Matthew Hardy, Zoe Hollis, Toby Hunt, Mike Kay, Vinay Kaykala, Diana Lemos, Disha Lodha, Nourhen Mathlouthi, Gabriela Alejandra Merino, Ryan Merritt, Louisse Paola Mirabueno, Aleena Mushtaq, Syed Nakib Hossain, José G Pérez-Silva, Malcolm Perry, Ivana Piližota, Daniel Poppleton, Irina Prosovetskaia, Shriya Raj, Ahamed Imran Abdul Salam, Shradha Saraf, Nuno Saraiva-Agostinho, Swati Sinha, Botond Sipos, Vasily Sitnik, Emily Steed, Marie-Marthe Suner, Likhitha Surapaneni, Kyösti Sutinen, Francesca Floriana Tricomi, Ian Tsang, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Natalie L Willhoft, Jamie Allen, Jorge Alvarez-Jarreta, Marc Chakiachvili, Jitender Cheema, Jorge Batista da Rocha, Nishadi H De Silva, Stefano Giorgetti, Leanne Haggerty, Garth R Ilsley, Jon Keatley, Jane E Loveland, Benjamin Moore, Jonathan M Mudge, Guy Naamati, John Tate, Stephen J Trevanion, Andrea Winterbottom, Bethany Flint, Adam Frankish, Sarah E Hunt, Robert D Finn, Mallory A Freeberg, Peter W Harrison, Fergal J Martin, Andrew D Yates
Publié dans: Nucleic Acids Research, Numéro 53, 2025, ISSN 0305-1048
Éditeur: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAE1071

Checklist of water mites from the Balkan Peninsula: second supplement, new DNA barcodes and description of a new species

Auteurs: VLADIMIR PEŠIĆ, ALEKSANDRA BANKOWSKA, TOM GOLDSCHMIDT, KARSTEIN HÅRSAKER, MILICA JOVANOVIĆ, ELISAVET KAITETZIDOU, MAJA KRAKOWIAK, ALEKSANDRA KOZŁOWSKA, EVANGELIA MICHALOUDI, GRZEGORZ MICHOŃSKI, MARKO MILIŠA, IVANA POZOJEVIĆ, TOMASZ REWICZ, OLIWIA RUSINIAK, KAROLINA SOBOLAK, IZABELA SZUĆKO, ROBERT STRYJECKI, ELISABETH STUR, AGNIESZKA SZLAUER-ŁUKASZEWSKA, MAGDALENA SZENEJKO, ANDRZEJ ZAWAL
Publié dans: Zootaxa, Numéro 5676, 2025, ISSN 1175-5334
Éditeur: Magnolia Press
DOI: 10.11646/ZOOTAXA.5676.1.1

Molecular phylogeny reveals a new species of the Hygrobates longipalpis complex from Portugal (Acariformes, Hydrachnidia, Hygrobatidae)

Auteurs: Vladimir Pešić, Ekaterina S. Konopleva, Dinis Girão, Chiara Vergata, Luis Guilherme Sousa, Sónia Ferreira
Publié dans: Ecologica Montenegrina, Numéro 94, 2026, ISSN 2336-9744
Éditeur: Institute for Biodiversity and Ecology
DOI: 10.37828/EM.2026.94.3

The role of community science in DNA-based biodiversity monitoring

Auteurs: Corrales, C., Bacela-Spychalska, K., Buzan, E., Ekrem, T., Ferreira, S., Goodall-Copestake, W., van Ommen Kloeke, E., Hollingsworth, P., Bourlat, S. J.
Publié dans: Molecular Ecology (in review), 2025
Éditeur: NA
DOI: 10.22541/au.174238571.18077669/v1

ERGA-BGE reference genome of Leviellus thorelli, a common orb-weaving spider representing the Zygiellidae family

Auteurs: Gregorič, Matjaz; Bužan, Elena; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Gut, Marta; Aguilera, Laura; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; S. Alioto, Tyler; Bortoluzzi, Chiara
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.12688/OPENRESEUROPE.21671.1

ERGA-BGE reference genome of Hanak's bat (Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes

Auteurs: Georgakakis, Panagiotis; Karakasi, Danae; Lymberakis, Petros; Papadimitrakis, Manolis; Stratakis, Manos; Bitzilekis, Eleftherios; Poulakakis, Nikolaos; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Mangenot, Sophie; Belser, Caroline; Wincker, Patrick; Oliveira, Pedro H.; Aury, Jean-Marc; Haggerty, Leanne; Sinha, Swati; Martin, Fergal; Bortoluzzi, Chiara
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ore
DOI: 10.12688/OPENRESEUROPE.20937.1

The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese moths

Auteurs: Sónia Ferreira; Martin Corley; João Nunes; Jorge Rosete; Sasha Vasconcelos; Vanessa Mata; Joana Veríssimo; Teresa Silva; Pedro Sousa; Rui Andrade; José Manuel Grosso-Silva; Catarina J. Pinho; Cátia Chaves; Filipa MS Martins; Joana Pinto; Pamela Puppo; Antonio Muñoz-Mérida; John Archer; Joana Pauperio; Pedro Beja
Publié dans: Biodiversity Data Journal, 2024, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/BDJ.12.E117169

From Permits to Samples: Addressing Key Challenges for High‐Quality Reference Genome Generation in Europe

Auteurs: Katja Reichel, Jaakko Pohjoismäki, Jonas J. Astrin, Astrid Böhne, Chiara Bortoluzzi, Elena Bužan, Javier del Campo, Claudio Ciofi, Camilla B. Di‐Nizo, Pradeep K. Divakar, Carola Greve, Vladimír Hampl, Leon Hilgers, Veronika N. Laine, Jennifer A. Leonard, Jesus Lozano‐Fernandez, Lada Lukić Bilela, Camila J. Mazzoni, Ann M. McCartney, José Melo‐Ferreira, Rita Monteiro, Rebekah A. Oomen, Martina Pavlek, João Pimenta, Michal Rindos, Ole Seehausen, Andrii Tarieiev, Salvatore Tomasello, Olga Vinnere Pettersson, Robert M. Waterhouse, Alexandra A.‐T. Weber, Oleksandr Zinenko, Christian de Guttry
Publié dans: Molecular Ecology Resources, Numéro 26, 2026, ISSN 1755-098X
Éditeur: Wiley
DOI: 10.5281/ZENODO.19853765

Contextualising samples: Supporting reference genomes of European biodiversity through sample and associated metadata collection

Auteurs: Astrid Böhne, Rosa Fernández, Jennifer A. Leonard, Ann M. McCartney, Seanna McTaggart, José Melo-Ferreira, Rita Monteiro, Rebekah A. Oomen, Olga Vinnere Pettersson, Torsten H. Struck
Publié dans: Contextualising samples: Supporting reference genomes of European biodiversity through sample and associated metadata collection, 2024, ISSN 2692-8205
Éditeur: npj Biodiversity
DOI: 10.1038/S44185-024-00053-7

ERGA-BGE genome of Valencia hispanica (Valenciennes, 1826): a critically endangered Iberian toothcarp

Auteurs: Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Tom Brown
Publié dans: 2025
Éditeur: Pensoft Publishers
DOI: 10.3897/ARPHAPREPRINTS.E152862

ERGA-BGE genome of Noah`s Ark shell (Arca noae Linnaeus, 1758), a Mediterranean bivalve species

Auteurs: Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Simone Duprat, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
Publié dans: 2025
Éditeur: Pensoft Publishers
DOI: 10.3897/ARPHAPREPRINTS.E154439

ERGA-BGE genome of Patella rustica Linnaeus, 1758: a resource to investigate responses to global warming in the intertidal

Auteurs: Rui Faria; Rocío Nieto Vilela; Fernando P Lima; Rita Monteiro; Astrid Böhne; Thomas Marcussen; Torsten H Struck; Rebekah A Oomen; Marta Gut; Laura Aguilera; Tyler Alioto; Francisco Câmara Ferreira; Jèssica Gómez-Garrido; Fernando Cruz; Anna Lazar; Leanne Haggerty; Fergal Martin; Tom Brown
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.5281/ZENODO.19052078

ERGA-BGE reference genome of the lineid heteronemertean Lineus lacteus (Pilidiophora, Nemertea)

Auteurs: Verdes, Aida; Alvarez-Campos, Patricia; Conejero, María; Riesgo, Ana; Böhne, Astrid; Monteiro, Rita; Palma-Guerrero, Javier; Fernández, Rosa; Gut, Marta; Aguilera, Laura; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; S. Alioto, Tyler; Bortoluzzi, Chiara
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.12688/OPENRESEUROPE.21501.1

ERGA-BGE reference genome of Eunicella cavolini, an IUCN Near Threatened Gorgonian of the Mediterranean Sea

Auteurs: Aurelle, Didier; Guillemain, Dorian; Zuberer, Frédéric; Malengros, Denys; Böhne, Astrid; Monteiro, Rita; Marcussen, Thomas; Struck, Torsten H.; A. Oomen, Rebekah; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Belser, Caroline; Wincker, Patrick; H. Oliveira, Pedro; Aury, Jean-Marc; Bortoluzzi, Chiara
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.12688/OPENRESEUROPE.21514.1

ERGA-BGE Reference Genome of the Striped Field Mouse (Apodemus agrarius), a Widespread and Abundant Species in Central and Eastern Europe

Auteurs: Franc Janžekovič, Elena Buzan, Aja Bončina, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler Alioto, Leanne Haggerty, Fergal Martin, Diego De Pan
Publié dans: 2025
Éditeur: ARPHA Preprints
DOI: 10.3897/ARPHAPREPRINTS.E154773

Biodiversity Genomics Research Practices Require Harmonising to Meet Stakeholder Needs in Conservation

Auteurs: Elena Buzan; Christian de Guttry; Chiara Bortoluzzi; Nathaniel R. Street; Kay Lucek; Anna Rosling; Lino Ometto; Alice Mouton; Luísa S. Marins; María José Ruiz‐López; José Melo‐Ferreira; Elisabet Ottosson; Camila J. Mazzoni; Robert M. Waterhouse
Publié dans: Molecular Ecology, 2025, ISSN 1365-294X
Éditeur: wiley
DOI: 10.1111/MEC.70001

Molecular Ecology Resources

Auteurs: Katja Reichel; Jaakko Pohjoismäki; Jonas J. Astrin; Astrid Böhne; Chiara Bortoluzzi; Elena Bužan; Javier del Campo; Claudio Ciofi; Camilla B. Di‐Nizo; Pradeep K. Divakar; Carola Greve; Vladimír Hampl; Leon Hilgers; Veronika N. Laine; Jennifer A. Leonard; Jesus Lozano‐Fernandez; Lada Lukić Bilela; Camila J. Mazzoni; Ann M. McCartney; José Melo‐Ferreira; Rita Monteiro; Rebekah A. Oomen; Martina Pavlek; João Pimenta; Michal Rindos; Ole Seehausen; Andrii Tarieiev; Salvatore Tomasello; Olga Vinnere Pettersson; Robert M. Waterhouse; Alexandra A.‐T. Weber; Oleksandr Zinenko; Christian de Guttry
Publié dans: Molecular Ecology Resources, 2026, ISSN 1755-098X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.70100

Integrating the biodiversity genomics continuum: harmonising data from barcodes to reference genomes

Auteurs: Katharina Heil, Tyler Alioto, Astrid Böhne, Tom Brown, Eli Chadwick, Physilia Chua, Christian de Guttry, Diego De Panis, Carole Goble, Ivo Gut, Marta Gut, Nick Juty, Seanna McTaggart, Laura Najera-Cortazar, Joana Paupério, Tomasz Rewicz, Felix Shaw, Stian Soiland-Reyes, Robert Waterhouse, Peter Woollard, Rutger Vos
Publié dans: Research Ideas and Outcomes, Numéro 12, 2026, ISSN 2367-7163
Éditeur: Pensoft Publishers
DOI: 10.3897/RIO.12.E187033

Ensembl 2024

Auteurs: Peter W Harrison et. al.
Publié dans: Nucleic Acids Research, 2023, ISSN 1362-4962
Éditeur: Oxford University Press
DOI: 10.1093/NAR/GKAD1049

ERGA-BGE genome of Androsace saussurei Dentant, Lavergne, F. C. Boucher & S. Ibanez, a recently described plant from the rooftops of Europe

Auteurs: Sébastien Lavergne; Zoé Rosa; Chuan Peng; Rita Monteiro; Astrid Böhne; Thomas Marcussen; Torsten H. Struck; Rebekah A Oomen; Alice Moussy; Corinne Cruaud; Karine Labadie; Emilie Téodori; Lola Demirdjian; Patrick Wincker; Pedro H Oliveira; Jean-Marc Aury; Vianey Paola Barrera Enriquez; Leanne Haggerty; Fergal Martin; Tom Brown
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.5281/ZENODO.19051862

First record of non-native polychaetes Polydora websteri and P. caeca invading cultured and wild populations of mussels and oysters in the Mediterranean

Auteurs: Barbara Mikac, Vasily I. Radashevsky, Eugenio Fossi, Victoria V. Pankova, Marina Antonia Colangelo, Giuseppe Prioli, Marco Abbiati, Federica Costantini
Publié dans: Aquaculture Reports, Numéro 42, 2025, ISSN 2352-5134
Éditeur: Elsevier BV
DOI: 10.5281/ZENODO.19350363

Biodiversity Genomics Europe (BGE) Project – Abridged Grant Proposal

Auteurs: Dimitris Koureas, Pedro Beja, Mark Blaxter, Astrid Böhne, Sarah Bourlat, Torbjørn Ekrem, Brent Emerson, Katharina Heil, José Melo-Ferreira, Ben Price, Rutger Vos, Wouter Addink, Tyler Alioto, Filippos Aravanopoulos, Jonas Astrin, Jean-Marc Aury, Ian Barnes, Claudia Bruschini, Elena Buzan, Guy Cochrane, Tamás Cserkész, Thanos Dailianis, Elza Duijm, Glenn Dunshea, Rosa Fernández, Sónia Ferreira, Giulio Formenti, Sara Fratini, Konstantinos Gkagkavouzis, Carole Goble, Michal Grabowski, Bjorn Grüning, Ivo Gut, Marta Gut, Peter Harrison, Axel Hausmann, Jacob Höglund, Laura Iacolina, Alessio Iannucci, Kjetill Jakobsen, Urmas Kõljalg, Henrik Lantz, Harris Lewin, Jan Macher, Tereza Manousaki, Fergal Martin, Ximo Mengual, Pedro Oliveira, Rebekah Oomen, Michael Raupach, Ana Riesgo, Hugues Roest Crollius, Anna Somogyi, Torsten Struck, Hannes Svardal, Ave Tooming-Klunderud, Alexandros Triantafyllidis, Olga Vinnere Pettersson, Maximilian Wagner, Patrick Wincker, Ni Yan, Jose Alonso, Ana Casino, Claudio Ciofi, Gabriela Daňková, Peter Hollingsworth, Mara Lawniczak, Camila Mazzoni, Robert Waterhouse
Publié dans: Research Ideas and Outcomes, Numéro 12, 2026, ISSN 2367-7163
Éditeur: Pensoft Publishers
DOI: 10.3897/RIO.12.E187550

ERGA-BGE reference genome of Holothuria (Platyperona) sanctori: a sea cucumber from the Mediterranean Sea

Auteurs: Vasileiadou, Katerina; Dailianis, Thanos; Skouradakis, Grigorios; Vernadou, Emmanouela; Karakasi, Danae; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Manousaki, Tereza; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Ndar, Adama; Wincker, Patrick; H Oliveira, Pedro; Aury, Jean-Marc; Bortoluzzi, Chiara
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ore
DOI: 10.12688/OPENRESEUROPE.20841.2

ERGA-BGE genome of Albinaria teres (Olivier, 1801): a rock-dwelling land snail endemic to the island of Crete, Greece

Auteurs: Danae Karakasi; Katerina Vardinoyannis; Giannis Bolanakis; Eleftherios Bitzilekis; Manos Stratakis; Petros Lymberakis; Nikolaos Poulakakis; Rita Monteiro; Astrid Böhne; Rosa Fernández; Nuria Escudero; Alice Moussy; Corinne Cruaud; Karine Labadie; Lola Demirdjian; Adama N’dar; Francesca Floriana Tricomi; Leanne Haggerty; Fergal Martin; Patrick Wincker; Pedro H Oliveira; Jean-Marc Aury; Tom Brown
Publié dans: Open Research Europe, 2026, ISSN 2732-5121
Éditeur: ORE
DOI: 10.5281/ZENODO.19051806

First record of the cockroach Ectobius vittiventris (Costa, 1847) (Dictyoptera:Blattodea: Ectobiinae) from Poland and new data on its occurrence in Czechia

Auteurs: Przemysław Żurawlew, Robert Vlk, Anna Kapusta, Paweł Radzikowski, Michal Grabowski
Publié dans: FRAGMENTA FAUNISTICA, Numéro 67, 2025, ISSN 0015-9301
Éditeur: Museum and Institute of Zoology at the Polish Academy of Sciences
DOI: 10.3161/00159301FF2024.67.2.113

ERGA-BGE genome of Anisus vorticulus (Troschel, 1834): the Lesser Ramshorn Snail, an endangered freshwater snail protected under the EU's Habitats and Species Directive

Auteurs: Bernhard Hausdorf; Elicio Tapia; Rita Monteiro; Astrid Böhne; Thomas Marcussen; Torsten H. Struck; Rebekah A Oomen; Leanne Haggerty; Fergal Martin; Thomas Brown
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ZENODO
DOI: 10.5281/ZENODO.15657687

ERGA-BGE genome of Dendarus foraminosus: an IUCN Least Concern darkling beetle endemic to Crete (Greece)

Auteurs: Bolanakis, Giannis; Karakasi, Danae; Trichas, Apostolos; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Bitzilekis, Eleftherios; Stratakis, Manos; Lymberakis, Petros; Poulakakis, Nikolaos; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Duprat, Simone; Téodori, Emilie; Wincker, Patrick; H. Oliveira, Pedro; Aury, Jean-Marc; Haggerty, Leanne; Sinha, Swati; Martin, Fergal; Bortoluzzi, Chiara
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.12688/OPENRESEUROPE.20489.2

Extensive DNA Barcoding of Lepidoptera of Crete (Greece) Reveals Significant Taxonomic and Faunistic Gaps and Supports the First Comprehensive Checklist of the Island’s Fauna

Auteurs: Peter Huemer, Kai Berggren, Leif Aarvik, Erwin Rennwald, Axel Hausmann, Andreas Segerer, Giorgia Staffoni, Aina Mærk Aspaas, Apostolos Trichas, Paul D. N. Hebert
Publié dans: Insects, Numéro 16, 2025, ISSN 2075-4450
Éditeur: MDPI AG
DOI: 10.3390/INSECTS16050438

Molecular phylogeny reveals three new water mite species of the genus Teutonia Koenike, 1889, from Portugal (Acari, Hydrachnidia, Teutoniidae)

Auteurs: Pešić, Vladimir; Konopleva, Ekaterina; Iannucci, Alessio; Ferreira, Sonia; Stur, Elisabeth
Publié dans: Systematic and Applied Acarology, 2025, ISSN 2056-6069
Éditeur: Systematic and Applied Acarology Society
DOI: 10.11158/SAA.30.2.14

ERGA-BGE genome ofCoenonympha oedippus: an IUCN endangered European butterfly species occurring in two ecotypes

Auteurs: Tatjana Čelik, Tjaša Lokovšek, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.02.10.637396

ERGA-BGE genome ofErebia palaricaChapman, 1905: a montane butterfly endemic to North-West Iberia

Auteurs: Marta Vila, Laura Torrado-Blanco, Nils Ryrholm, David Romero-Pedreira, María Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.08.631636

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

Auteurs: Ali Hakimzadeh, Alejandro Abdala Asbun, Davide Albanese, Maria Bernard, Dominik Buchner, Benjamin Callahan, J. Gregory Caporaso, Emily Curd, Christophe Djemiel, Mikael Brandström Durling, Vasco Elbrecht, Zachary Gold, Hyun S. Gweon, Mehrdad Hajibabaei, Falk Hildebrand, Vladimir Mikryukov, Eric Normandeau, Ezgi Özkurt, Jonathan M. Palmer, Géraldine Pascal, Teresita M. Porter, Daniel Straub, Martti Vasar, Tomáš Větrovský, Haris Zafeiropoulos, Sten Anslan
Publié dans: Molecular Ecology Resources, Numéro 24, 2024, ISSN 1755-098X
Éditeur: Wiley
DOI: 10.1111/1755-0998.13847

ERGA-BGE genome of Erebia palarica Chapman, 1905: a montane butterfly endemic to North-West Spain

Auteurs: Marta Vila Taboada; Laura Torrado-Blanco; Nils Ryrholm; David Romero-Pedreira; María Conejero; Astrid Böhne; Rita Monteiro; Thomas Marcussen; Rebekah A. Oomen; Torsten H. Struck; Laura Aguilera; Marta Gut; Francisco Câmara Ferreira; Fernando Cruz; Jèssica Gómez-Garrido; Tyler S. Alioto; Leanne Haggerty; Fergal Martin; Chiara Bortoluzzi
Publié dans: Open Research Europe, 2026, ISSN 2732-5121
Éditeur: ORE
DOI: 10.5281/ZENODO.19051997

ERGA-BGE reference genome of Gambusia holbrooki, a globally invasive freshwater fish

Auteurs: Bonnie Fraser, Clelia Gasparini, Francesco Santi, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah A. Oomen, Torsten H. Struck, null null, null null, null null, Amy Denton, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Swati Sinha, Leanne Haggerty, Chiara Bortoluzzi
Publié dans: Open Research Europe, Numéro 6, 2026, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.5281/ZENODO.19853405

Molecular phylogeny reveals three new water mite species of the genus Teutonia Koenike, 1889, from Portugal (Acari, Hydrachnidia, Teutoniidae)

Auteurs: Vladimir Pešić, Ekaterina S. Konopleva, Alessio Iannucci, Sónia Ferreira, Elisabeth Stur
Publié dans: Systematic and Applied Acarology, 2025, ISSN 2056-6069
Éditeur: Systematic and Applied Acarology Society
DOI: 10.11158/SAA.30.2.14

Insects

Auteurs: Peter Huemer; Kai Berggren; Leif Aarvik; Erwin Rennwald; Axel Hausmann; Andreas Segerer; Giorgia Staffoni; Aina Mærk Aspaas; Apostolos Trichas; Paul D. N. Hebert
Publié dans: Insects, 2025, ISSN 2075-4450
Éditeur: MDPI
DOI: 10.3390/INSECTS16050438

Under pressure: the Critically Endangered common hamster in Hungary reached an all-time demographic low in 2024

Auteurs: Lajos Szatmári, Gábor Sramkó, Virág Nyíri, Tamás Cserkész
Publié dans: Oryx, Numéro 58, 2024, ISSN 0030-6053
Éditeur: Cambridge University Press (CUP)
DOI: 10.1017/S003060532400070X

ERGA-BGE genome of the Spanish moon moth Actias isabellae Graells, 1849: a nocturnal lepidopteran protected by the Habitats Directive

Auteurs: Marta Vila; Neus Marí-Mena; Roger Vila; Ana Riesgo; Daniel García-Souto; Carlos Lopez-Vaamonde; Astrid Böhne; Rita Monteiro; Thomas Marcussen; Rebekah Oomen; Torsten H. Struck; Marta Gut; Laura Aguilera; Francisco Câmara Ferreira; Fernando Cruz; Jèssica Gómez-Garrido; Tyler S. Alioto; Leanne Haggerty; Fergal Martin; Chiara Bortoluzzi
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ore
DOI: 10.12688/OPENRESEUROPE.20658.2

The InBIO Barcoding Initiative Database: DNA barcodes of Iberian Bees

Auteurs: Wood T, Gaspar H, Divelec RL, Penado A, Silva TL, Mata V, Veríssimo J, Michez D, Castro S, Loureiro J, Beja P, Ferreira S
Publié dans: Biodiversity Data Journal, 2024, ISSN 1314-2828
Éditeur: 10.3897/BDJ.12.e117172
DOI: 10.3897/BDJ.12.E117172

ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid

Auteurs: Fernández-Álvarez, Fernando Ángel; Bernal-Bajo, Ainhoa; Escudero, Nuria; Conejero, María; Riesgo, Ana; Fernández, Rosa; Monteiro, Rita; Böhne, Astrid; Aguilera, Laura; Gut, Marta; Alioto, Tyler S; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; Haggerty, Leanne; Martin, Fergal; Brown, Tom
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ore
DOI: 10.12688/OPENRESEUROPE.20439.1

ERGA-BGE reference genome of Carlina diae, an endemic spineless thistle of Crete, Greece

Auteurs: Eleftheria Antaloudaki, Danae Karakasi, Manos Stratakis, Eleftherios Bitzilekis, Petros Lymberakis, Nikolaos Poulakakis, Tereza Manousaki, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, null null, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Fergal Martin, Vianey Paola Barrera Enriquez, Leanne Haggerty, Chiara Bortoluzzi
Publié dans: Open Research Europe, Numéro 6, 2026, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.5281/ZENODO.19853035

Methods in Ecology and Evolution

Auteurs: Marius Hannes Eisele; Brendan Furneaux; Tomas Roslin; Otso Ovaskainen; Brent C. Emerson; Carmelo Andújar
Publié dans: Methods in Ecology and Evolution, 2025, ISSN 2041-210X
Éditeur: John Wiley and Sons Inc.
DOI: 10.1111/2041-210X.70159

Delimiting Species—Prospects and Challenges for <scp>DNA</scp> Barcoding

Auteurs: Brent C. Emerson
Publié dans: Molecular Ecology, Numéro 34, 2025, ISSN 0962-1083
Éditeur: Wiley
DOI: 10.1111/MEC.17677

DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia)

Auteurs: Vladimir Pešić, Andrzej Zawal, Sónia Ferreira, Laura Benitez-Bosco, Ana Cruz-Oliveira, Dinis Girão, Adriana Padilha, Paolo Turaccio, Samantha Rossini, Lorenzo Ballini, Giorgia Staffoni, Sara Fratini, Claudio Ciofi, Alessio Iannucci, Torbjørn Ekrem, Elisabeth Stur
Publié dans: ZooKeys, Numéro 1217, 2024, ISSN 1313-2970
Éditeur: Pensoft Publishers
DOI: 10.3897/ZOOKEYS.1217.131730

The InBIO Barcoding Initiative Database: DNA barcodes of Orthoptera from Portugal

Auteurs: Sílvia Pina; Joana Pauperio; Francisco Barros; Cátia Chaves; Filipa MS Martins; Joana Pinto; Joana Veríssimo; Vanessa Mata; Pedro Beja; Sónia Ferreira
Publié dans: Biodiversity Data Journal, 2024, ISSN 1314-2828
Éditeur: Pensoft Publishers
DOI: 10.3897/BDJ.12.E118010

A new species of Torrenticola ungeri complex (Acari, Hydrachnidia, Torrenticolidae), and new water mite records for Portugal

Auteurs: Pešić, Vladimir; Girão, Dinis; Vergata, Chiara; da Silva, Luis P.; Ferreira, Sonia
Publié dans: Zootaxa, 2025, ISSN 1175-5334
Éditeur: Magnolia Press, Auckland, New Zealand
DOI: 10.11646/ZOOTAXA.5717.1.1

New records of aturid water mites from Portugal, with the integrative description of one new species (Acari, Hydrachnidia, Aturidae)

Auteurs: Vladimir Pešić, Harry Smit, Dinis Girão, Alessio Iannucci, Elisabeth Stur, Sónia Ferreira
Publié dans: Ecologica Montenegrina, Numéro 80, 2024, ISSN 2336-9744
Éditeur: Institute for Biodiversity and Ecology
DOI: 10.37828/EM.2024.80.19

ERGA-BGE genome of Xanthium orientale subsp. italicum (Moretti) Greuter. A plant of American origin, now widespread and, in some cases, invasive in Europe

Auteurs: Tomasello, Salvatore; Manzo, Eleonora; Monteiro, Rita; Böhne, Astrid; Marcussen, Thomas; Struck, Torsten; Oomen, Rebekah; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; N’dar, Adama; Wincker, Patrick; Oliveira, Pedro H.; Aury, Jean-Marc; Barrera Enriquez, Vianey Paola; Haggerty, Leanne; Martin, Fergal; Brown, Tom
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ore
DOI: 10.12688/OPENRESEUROPE.21891.1

ERGA-BGE genome of Dailognatha quadricollis, an East Mediterranean darkling beetle

Auteurs: Giannis Bolanakis; Danae Karakasi; Eleftherios Bitzilekis; Manos Stratakis; Apostolos Trichas; Petros Lymberakis; Nikos Poulakakis; Astrid Böhne; Rita Monteiro; Rosa Fernández; Nuria Escudero; Alice Moussy; Corinne Cruaud; Karine Labadie; Lola Demirdjian; Emilie Téodori; Patrick Wincker; Pedro H. Oliveira; Jean-Marc Aury; Chiara Bortoluzzi
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.5281/ZENODO.19051633

ERGA-BGE genome of the Spanish Moon MothGraellsia isabellaeGraells, 1849: a nocturnal lepidopteran protected by the Habitats Directive

Auteurs: Marta Vila, Neus Marí-Mena, Roger Vila, Ana Riesgo, Daniel García-Souto, Carlos Lopez-Vaamonde, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.08.631683

ERGA-BGE genome of the ironclad beetle Tarphius canariensis Wollaston, 1862

Auteurs: Brent C Emerson; María Conejero; Ana Riesgo; Víctor Noguerales; Rita Monteiro; Astrid Böhne; Javier Palma Guerrero; Rosa Fernández; Leanne Haggerty; Fergal Martin; Tom Brown
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.5281/ZENODO.19052166

ERGA-BGE reference genome of the Azores Bullfinch - Pyrrhula murina Godman, 1866: an IUCN Vulnerable Species endemic to a single island in the Azores Archipelago (Portugal)

Auteurs: Ricardo Jorge Lopes, Astrid Böhne, Thomas Marcussen, Rebekah A. Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Rita Monteiro
Publié dans: Open Research Europe, Numéro 5, 2026, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.12688/OPENRESEUROPE.20666.1

How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map

Auteurs: Andersson, L., Bekkevold, D., Berg, F., Farrell, E.D., Felkel, S., Ferreira, M., Fuentes-Pardo, A.P., Goodall, J., Pettersson, M.
Publié dans: Annual Review in Animal Biosciences, 2024, ISSN 2165-8102
Éditeur: Annual Reviews Inc.
DOI: 10.1146/ANNUREV-ANIMAL-021122-102933

ERGA-BGE Genome of the viperine water snake (Natrix maura): a key species for evolutionary insights of freshwater snakes

Auteurs: Carranza, Salvador; Fernández-Guiberteau, Daniel; Blasón, Laura; Tulloch, Sergi; Monteiro, Rita; Böhne, Astrid; Fernández, Rosa; Escudero, Nuria; Aguilera, Laura; Gut, Marta; Alioto, Tyler S; Câmara Ferreira, Francisco; Gómez-Garrido, Jèssica; Cruz, Fernando; Sinha, Swati; Haggerty, Leanne; Martin, Fergal; Brown, Tom
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.5281/ZENODO.16917612

ERGA-BGE reference genome of Lewinskya acuminata, a common epiphytic Mediterranean moss with disjunct populations in California and Ethiopia

Auteurs: Pablo Aguado-Ramsay; Francisco Lara; Isabel Draper; Maria Conejero; Astrid Böhne; Rita Monteiro; Thomas Marcussen; Torsten H. Struck; Rebekah A. Oomen; Alice Moussy; Corinne Cruaud; Karine Labadie; Lola Demirdjian; Emilie Téodori; Patrick Wincker; Pedro H. Oliveira; Jean-Marc Aury; Chiara Bortoluzzi
Publié dans: Open Research Europe, 2025, ISSN 2732-5121
Éditeur: ORE
DOI: 10.12688/OPENRESEUROPE.21670.1

ERGA-BGE genome of Cheirolophus tagananensis: an IUCN endangered shrub endemic to the Canary Islands

Auteurs: Jaume Pellicer, Teresa Garnatje, Daniel Vitales, Oriane Hidalgo, Joan Valles, Alfredo Garcia-Fernandez, Arnoldo Santos-Guerra, Astrid Bohne, Rita Monteiro, Rosa Fernandez, Nuria Escudero, null null, null null, null null, Abitha Thomas, Benjamin Jackson, Jonathan MD Wood, Kerstin Howe, Mark Blaxter, Shane McCarthy, Chiara Bortoluzzi
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.24.634661

The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae)

Auteurs: Paolo Rosa, Thomas Wood, Teresa Luísa L. Silva, Joana Veríssimo, Vanessa A. Mata, Denis Michez, Pedro Beja, Sónia Ferreira
Publié dans: The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae), 2023, ISSN 1314-2828
Éditeur: Biodiversity Data Journal
DOI: 10.3897/BDJ.8.e55137FreePMCarticle

ERGA-BGE reference genome of Diadema setosum: the Black Longspine Urchin invading the Mediterranean sea

Auteurs: Katerina Vasileiadou, Tereza Manousaki, Astrid Böhne, Rosa Fernández, Nuria Escudero, null null, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Benjamin Istace, Arnaud Couloux, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Rita Monteiro
Publié dans: Open Research Europe, Numéro 6, 2026, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.12688/OPENRESEUROPE.20681.1

ERGA-BGE genome of Albinaria teres (Olivier, 1801): a rock-dwelling land snail endemic to the island of Crete, Greece

Auteurs: Danae Karakasi, Katerina Vardinoyannis, Giannis Bolanakis, Eleftherios Bitzilekis, Manos Stratakis, Petros Lymberakis, Nikolaos Poulakakis, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, null null, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Adama N’dar, Francesca Floriana Tricomi, Leanne Haggerty, Fergal Martin, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Tom Brown
Publié dans: Open Research Europe, Numéro 6, 2026, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.5281/ZENODO.19852275

ERGA-BGE reference genome of Hirudo verbana, a once neglected freshwater haematophagous European medicinal leech

Auteurs: Alejandro Manzano-Marín, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Torsten H. Struck, Rebekah A. Oomen, null null, null null, null null, Caroline Howard, Kerstin Howe, Mark Blaxter, Shane McCarthy, Jonathan M.D. Wood, Fergal Martin, Anna Lazar, Leanne Haggerty, Chiara Bortoluzzi
Publié dans: Open Research Europe, Numéro 5, 2026, ISSN 2732-5121
Éditeur: F1000 Research Ltd
DOI: 10.5281/ZENODO.19853521

ERGA-BGE genome of Pinctada radiata (Leach, 1814): one of the first Lessepsian migrants

Auteurs: Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Benjamin Istace, Arnaud Couloux, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
Publié dans: 2025
Éditeur: Pensoft Publishers
DOI: 10.3897/ARPHAPREPRINTS.E154462

Exploring the water mite fauna (Acari, Hydrachnidia) of the Madeira archipelago: DNA Barcoding reveals a remarkable species endemicity

Auteurs: VLADIMIR PEŠIĆ; ANDRZEJ ZAWAL; ALEKSANDRA BANKOWSKA; RICARDO ARAÚJO; ŁUKASZ SŁUGOCKI; TOMASZ REWICZ; MAJA KRAKOWIAK; GRZEGORZ MICHOŃSKI; DINIS GIRÃO; LUIS P. DA SILVA; INÊS ÓRFÃO; PEDRO M. RAPOSEIRO; LORENZO BALLINI; ROBERT STRYJECKI; TORBJØRN EKREM; SÓNIA FERREIRA
Publié dans: Zootaxa, 2025, ISSN 1175-5334
Éditeur: Magnolia Press, Auckland, New Zealand
DOI: 10.11646/ZOOTAXA.5621.5.1

ERGA wiki

Auteurs: Schlude Marins, Luísa; de Guttry, Christian; Waterhouse, Robert M.; Bortoluzzi, Chiara; Brown, Tom
Éditeur: ERGA
DOI: 10.5281/ZENODO.15182472

ERGA-BGE genome ofValencia hispanica(Valenciennes, 1826): a critically endangered Iberian toothcarp

Auteurs: Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Thomas Brown
Publié dans: 2024
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.07.31.604920

Harmonising genomics research excellence and stakeholder needs in conservation management

Auteurs: Elena Buzan, Christian de Guttry, Chiara Bortoluzzi, Nathaniel Street, Kay Lucek, Anna Rosling, Lino Ometto, Alice Mouton, Luísa Marins, María José Ruiz-López, José Melo-Ferreira, Elisabet Ottosson, Camila Mazzoni, Robert Waterhouse
Publié dans: 2024
Éditeur: Authorea, Inc.
DOI: 10.22541/au.172510123.38206942/v1

ERGA-BGE genome ofStigmatoteuthis arcturiRobson, 1948: the jewelled squid

Auteurs: Fernando Ángel Fernández-Álvarez, Ainhoa Bernal-Bajo, Nuria Escudero, María Conejero, Ana Riesgo, Rosa Fernández, Rita Monteiro, Astrid Böhne, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tom Brown
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.13.632676

ERGA-BGE genome ofAndrosace saussureiDentant, Lavergne, F. C. Boucher & S. Ibanez, a recently described plant from the rooftops of Europe

Auteurs: Sébastien Lavergne, Alexy Rosa, Chuan Peng, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten Struck, Rebekah A. Oomen, null null, Alice Moussy, Corinne Cruaud, Karine Labadie, Emilie Téodori, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Tom Brown
Publié dans: 2025
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.21.634019

ERGA-BGE Reference Genome ofLoboptera subterranea: a cave adapted cockroach endemic to the Canary Islands

Auteurs: Heriberto López, Pedro Oromí, Xavier Belles, Guillem Ylla, Nuria Escudero, Rosa Fernández, Astrid Böhne, Marta Gut, Laura Aguilera, Tyler Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Rita Monteiro
Publié dans: 2025, ISSN 2692-8205
Éditeur: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.02.06.636782

Gap analysis on the implementation of reference genomes and genomics in conservation, bioeconomy and disease applications Intermediate report

Auteurs: Pimenta, João; Melo-Ferreira, José
Publié dans: 2025
Éditeur: Zenodo
DOI: 10.5281/ZENODO.18401133

Genome Annotation and Other Post-Assembly Workflows for the Tree of Life

Auteurs: Tom Brown, Kathleen A. Collier, Fernando Cruz, Anestis Gkanogiannis, Sagane Joye-Dind, Yannis Nevers, Stepan Saenko, Tyler Alioto, Anthony Bretaudeau, Michael Charleston, Phuong Duy Doan, Christoph Hahn, Thomas W. Harrop, Katie E Herron, Fredrick Kebaso,
Publié dans: BioHackrXiv Preprints, 2024
Éditeur: BioHackrXiv.org
DOI: 10.37044/OSF.IO/FY49G

Monitoring of the Balkan chamois (Rupicapra rupicapra balcanica) populations in the territory of the Republic of Srpska

Auteurs: Dragan Gačić
Publié dans: Book of abstracts, 2025
Éditeur: Slovenian Forestry Institute
DOI: 10.20315/EVMC.2025.129

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