Biodiversity Genomics Europe

Informazioni relative al progetto

BGE

ID dell’accordo di sovvenzione: 101059492

DOI

10.3030/101059492

Progetto chiuso

Data della firma CE 7 Giugno 2022

Data di avvio 1 Settembre 2022

Data di completamento 28 Febbraio 2026

Finanziato da

• Food, Bioeconomy Natural Resources, Agriculture and Environment

Costo totale

€ 17 159 391,25

Contributo UE

€ 17 080 738,00

Coordinato da

STICHTING NATURALIS BIODIVERSITY CENTER
Netherlands

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Risultati finali

Documents, reports (13)

Species prioritisation for genome sequencing

Priority lists of species selected for sampling in WP5 and WP12 based on a gap analysis of available reference genomes for European biodiversity and a feasibility evaluation, serves as guideline for general prioritisation in genome sequencing consortia.

Metadata collection standards

Produce standard metadata collection sheets to be used by participants in the Project.

Biobanking standards

Definition of biobanking standards and guidelines for the Project, with option for central biobank storage.

SOPs karyotyping, genome size, cell culturing

SOPs for karyotyping, genome size estimation and cell culturing and maintenance of frozen archives.

Genome assembly/quality control tools

State-of-the-art genome assembly and quality control tools packaged in openly accessible computational workflows for use by in-Project partners and the wider genomics community.

Aquatic field sampling

Report documenting samples collected for reference library barcoding and eDNA samples collected from marine ports for biomonitoring.

Instance of BOLD Europe

Set-up an operational instance of BOLD in Europe.

Prioritisation guidelines for the wider community

This report will detail plans that guide species selection for the duration of the project and other consortia in the wider biodiversity genomics (BioGenomes) community.

Material for genome sequencing critical European biodiversity

150-200 species submitted to sequencing centres, vouchered in biobanks and museums and metadata completed.

BOLD Europe design study

A consensus report on the future architecture and implementation steps of the BOLD Europe instance.

Material for genome sequencing European biodiversity hotspots

150-200 species (providing ca. 200Gbp genome assembly span, further material for future extension) submitted to sequencing centres, vouchered in biobanks and museums and metadata completed.

Terrestrial field sampling

Report documenting the sampling for barcoding and metabarcoding, proposing methodological guidelines for standardisation of field sampling for biomonitoring of terrestrial habitats using DNA metabarcoding.

Population-level sample collection

Report summarising all population-level ollinator sampling efforts and delivered samples.

Websites, patent fillings, videos etc. (1)

Online Barcode Information Portal

Full release of content-rich online platform providing a nexus for the DNA barcoding community in Europe.

Pubblicazioni

Peer reviewed articles (37)

The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

Autori: Kessy Abarenkov, R Henrik Nilsson, Karl-Henrik Larsson, Andy F S Taylor, Tom W May, Tobias Guldberg Frøslev, Julia Pawlowska, Björn Lindahl, Kadri Põldmaa, Camille Truong, Duong Vu, Tsuyoshi Hosoya, Tuula Niskanen, Timo Piirmann, Filipp Ivanov, Allan Zirk
Pubblicato in: Nucleic Acids Research, Numero 52, 2023, ISSN 1362-4962
Editore: Nucleic Acids Research
DOI: 10.1093/nar/gkad1039

Building a Portuguese coalition for biodiversity genomics

Autori: João P. Marques, Paulo C. Alves, Isabel R. Amorim, Ricardo J. Lopes, Monica Moura, Eugene Myers, Manuela Sim-sim, Carla Sousa-Santos, M. Judite Alves, Paulo A. V. Borges, Thomas Brown, Miguel Carneiro, Carlos Carrapato, Luís M. P. Ceríaco, Claúdio Ciofi, Luís P. da Silva, Genevieve Diedericks, Maria Angela Diroma, Liliana Farelo, Giulio Formenti, Fátima Gil, Miguel Grilo, Alessio Iannucci, Henrique G. Leitão, Cristina Máguas, Ann M. Mc Cartney, Sofia L. Mendes, João M. Moreno, Marco Morselli, Alice Mouton, Chiara Natali, Fernando Pereira, Rúben M. C. Rego, Roberto Resendes, Guilherme Roxo, Hannes Svardal, Helena Trindade, Sara Vicente, Sylke Winkler, Marcela Alvarenga, Andreia J. Amaral, Agostinho Antunes, Paula F. Campos, Adelino V. M. Canário, Rita Castilho, L. Filipe C. Castro, Angelica Crottini, Mónica V. Cunha, Gonçalo Espregueira Themudo, Pedro J. Esteves, Rui Faria, Carlos Rodríguez Fernandes, Jean-Baptiste Ledoux, Bruno Louro, Sara Magalhaes, Octávio S. Paulo, Gareth Pearson, João Pimenta, Francisco Pina-Martins, Teresa L. Santos, Ester Serrão, José Melo-Ferreira, Vítor C. Sousa
Pubblicato in: npj Biodiversity, Numero 3, 2024, ISSN 2731-4243
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S44185-024-00061-7

ERGA-BGE genome of Acomys minous (Bate, 1906): the Crete spiny mouse, endemic to the island of Crete, Greece

Autori: Petros Lymberakis, Danae Karakasi, Manolis Papadimitrakis, Rita Monteiro, Astrid Böhne, Rosa Fernández, Nuria Escudero, Jean-Marc Aury, Alice Moussy, Corinne Cruaud, Karine Labadie, Sophie Mangenot, Caroline Belser, Lola Demirdjian, Swati Sinha, Leanne Haggerty, Fergal Martin, Patrick Wincker, Pedro H. Oliveira, Tom Brown
Pubblicato in: 2025
Editore: Pensoft Publishers
DOI: 10.3897/ARPHAPREPRINTS.E153920

ERGA-BGE Reference Genome of the Northern chamois (<i>Rupicapra rupicapra</i>): Europe’s most abundant mountain ungulate

Autori: Elena Buzan, Aja Bončina, Boštjan Pokorny, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Leanne Haggerty, Fergal Martin, Diego De Panis
Pubblicato in: 2024
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.11.20.624344

Taxonomic position of Tetrops peterkai Skořepa, 2020 (Сoleoptera: Сerambycidae) and its cryptic distribution

Autori: Andrew Zamoroka, Oleksandr Zinenko
Pubblicato in: Journal of Vasyl Stefanyk Precarpathian National University. Biology, Numero 11, 2025, ISSN 3083-662X
Editore: Vasyl Stefanyk Precarpathian National University
DOI: 10.15330/JPNUBIO.11.6-19

Ensembl 2025

Autori: Sarah C Dyer, Olanrewaju Austine-Orimoloye, Andrey G Azov, Matthieu Barba, If Barnes, Vianey Paola Barrera-Enriquez, Arne Becker, Ruth Bennett, Martin Beracochea, Andrew Berry, Jyothish Bhai, Simarpreet Kaur Bhurji, Sanjay Boddu, Paulo R Branco Lins, Lucy Brooks, Shashank Budhanuru Ramaraju, Lahcen I Campbell, Manuel Carbajo Martinez, Mehrnaz Charkhchi, Lucas A Cortes, Claire Davidson, Sukanya Denni, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Oluwadamilare Falola, Reham Fatima, Thiago Genez, Jose Gonzalez Martinez, Tatiana Gurbich, Matthew Hardy, Zoe Hollis, Toby Hunt, Mike Kay, Vinay Kaykala, Diana Lemos, Disha Lodha, Nourhen Mathlouthi, Gabriela Alejandra Merino, Ryan Merritt, Louisse Paola Mirabueno, Aleena Mushtaq, Syed Nakib Hossain, José G Pérez-Silva, Malcolm Perry, Ivana Piližota, Daniel Poppleton, Irina Prosovetskaia, Shriya Raj, Ahamed Imran Abdul Salam, Shradha Saraf, Nuno Saraiva-Agostinho, Swati Sinha, Botond Sipos, Vasily Sitnik, Emily Steed, Marie-Marthe Suner, Likhitha Surapaneni, Kyösti Sutinen, Francesca Floriana Tricomi, Ian Tsang, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Natalie L Willhoft, Jamie Allen, Jorge Alvarez-Jarreta, Marc Chakiachvili, Jitender Cheema, Jorge Batista da Rocha, Nishadi H De Silva, Stefano Giorgetti, Leanne Haggerty, Garth R Ilsley, Jon Keatley, Jane E Loveland, Benjamin Moore, Jonathan M Mudge, Guy Naamati, John Tate, Stephen J Trevanion, Andrea Winterbottom, Bethany Flint, Adam Frankish, Sarah E Hunt, Robert D Finn, Mallory A Freeberg, Peter W Harrison, Fergal J Martin, Andrew D Yates
Pubblicato in: Nucleic Acids Research, Numero 53, 2025, ISSN 0305-1048
Editore: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAE1071

Checklist of water mites from the Balkan Peninsula: second supplement, new DNA barcodes and description of a new species

Autori: VLADIMIR PEŠIĆ, ALEKSANDRA BANKOWSKA, TOM GOLDSCHMIDT, KARSTEIN HÅRSAKER, MILICA JOVANOVIĆ, ELISAVET KAITETZIDOU, MAJA KRAKOWIAK, ALEKSANDRA KOZŁOWSKA, EVANGELIA MICHALOUDI, GRZEGORZ MICHOŃSKI, MARKO MILIŠA, IVANA POZOJEVIĆ, TOMASZ REWICZ, OLIWIA RUSINIAK, KAROLINA SOBOLAK, IZABELA SZUĆKO, ROBERT STRYJECKI, ELISABETH STUR, AGNIESZKA SZLAUER-ŁUKASZEWSKA, MAGDALENA SZENEJKO, ANDRZEJ ZAWAL
Pubblicato in: Zootaxa, Numero 5676, 2025, ISSN 1175-5334
Editore: Magnolia Press
DOI: 10.11646/ZOOTAXA.5676.1.1

The role of community science in DNA-based biodiversity monitoring

Autori: Corrales, C., Bacela-Spychalska, K., Buzan, E., Ekrem, T., Ferreira, S., Goodall-Copestake, W., van Ommen Kloeke, E., Hollingsworth, P., Bourlat, S. J.
Pubblicato in: Molecular Ecology (in review), 2025
Editore: NA
DOI: 10.22541/au.174238571.18077669/v1

The InBIO Barcoding Initiative Database: DNA barcodes of Portuguese moths

Autori: Sónia Ferreira; Martin Corley; João Nunes; Jorge Rosete; Sasha Vasconcelos; Vanessa Mata; Joana Veríssimo; Teresa Silva; Pedro Sousa; Rui Andrade; José Manuel Grosso-Silva; Catarina J. Pinho; Cátia Chaves; Filipa MS Martins; Joana Pinto; Pamela Puppo; Antonio Muñoz-Mérida; John Archer; Joana Pauperio; Pedro Beja
Pubblicato in: Biodiversity Data Journal, 2024, ISSN 1314-2828
Editore: Pensoft Publishers
DOI: 10.3897/BDJ.12.E117169

Contextualising samples: Supporting reference genomes of European biodiversity through sample and associated metadata collection

Autori: Astrid Böhne, Rosa Fernández, Jennifer A. Leonard, Ann M. McCartney, Seanna McTaggart, José Melo-Ferreira, Rita Monteiro, Rebekah A. Oomen, Olga Vinnere Pettersson, Torsten H. Struck
Pubblicato in: Contextualising samples: Supporting reference genomes of European biodiversity through sample and associated metadata collection, 2024, ISSN 2692-8205
Editore: npj Biodiversity
DOI: 10.1038/S44185-024-00053-7

ERGA-BGE genome of Valencia hispanica (Valenciennes, 1826): a critically endangered Iberian toothcarp

Autori: Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Tom Brown
Pubblicato in: 2025
Editore: Pensoft Publishers
DOI: 10.3897/ARPHAPREPRINTS.E152862

ERGA-BGE genome of Noah`s Ark shell (Arca noae Linnaeus, 1758), a Mediterranean bivalve species

Autori: Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Emilie Téodori, Simone Duprat, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
Pubblicato in: 2025
Editore: Pensoft Publishers
DOI: 10.3897/ARPHAPREPRINTS.E154439

ERGA-BGE Reference Genome of the Striped Field Mouse (Apodemus agrarius), a Widespread and Abundant Species in Central and Eastern Europe

Autori: Franc Janžekovič, Elena Buzan, Aja Bončina, Nuria Escudero, Rosa Fernández, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler Alioto, Leanne Haggerty, Fergal Martin, Diego De Pan
Pubblicato in: 2025
Editore: ARPHA Preprints
DOI: 10.3897/ARPHAPREPRINTS.E154773

Molecular Ecology Resources

Autori: Katja Reichel; Jaakko Pohjoismäki; Jonas J. Astrin; Astrid Böhne; Chiara Bortoluzzi; Elena Bužan; Javier del Campo; Claudio Ciofi; Camilla B. Di‐Nizo; Pradeep K. Divakar; Carola Greve; Vladimír Hampl; Leon Hilgers; Veronika N. Laine; Jennifer A. Leonard; Jesus Lozano‐Fernandez; Lada Lukić Bilela; Camila J. Mazzoni; Ann M. McCartney; José Melo‐Ferreira; Rita Monteiro; Rebekah A. Oomen; Martina Pavlek; João Pimenta; Michal Rindos; Ole Seehausen; Andrii Tarieiev; Salvatore Tomasello; Olga Vinnere Pettersson; Robert M. Waterhouse; Alexandra A.‐T. Weber; Oleksandr Zinenko; Christian de Guttry
Pubblicato in: Molecular Ecology Resources, 2026, ISSN 1755-098X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/1755-0998.70100

Ensembl 2024

Autori: Peter W Harrison et. al.
Pubblicato in: Nucleic Acids Research, 2023, ISSN 1362-4962
Editore: Oxford University Press
DOI: 10.1093/NAR/GKAD1049

Biodiversity Genomics Europe (BGE) Project – Abridged Grant Proposal

Autori: Dimitris Koureas, Pedro Beja, Mark Blaxter, Astrid Böhne, Sarah Bourlat, Torbjørn Ekrem, Brent Emerson, Katharina Heil, José Melo-Ferreira, Ben Price, Rutger Vos, Wouter Addink, Tyler Alioto, Filippos Aravanopoulos, Jonas Astrin, Jean-Marc Aury, Ian Barnes, Claudia Bruschini, Elena Buzan, Guy Cochrane, Tamás Cserkész, Thanos Dailianis, Elza Duijm, Glenn Dunshea, Rosa Fernández, Sónia Ferreira, Giulio Formenti, Sara Fratini, Konstantinos Gkagkavouzis, Carole Goble, Michal Grabowski, Bjorn Grüning, Ivo Gut, Marta Gut, Peter Harrison, Axel Hausmann, Jacob Höglund, Laura Iacolina, Alessio Iannucci, Kjetill Jakobsen, Urmas Kõljalg, Henrik Lantz, Harris Lewin, Jan Macher, Tereza Manousaki, Fergal Martin, Ximo Mengual, Pedro Oliveira, Rebekah Oomen, Michael Raupach, Ana Riesgo, Hugues Roest Crollius, Anna Somogyi, Torsten Struck, Hannes Svardal, Ave Tooming-Klunderud, Alexandros Triantafyllidis, Olga Vinnere Pettersson, Maximilian Wagner, Patrick Wincker, Ni Yan, Jose Alonso, Ana Casino, Claudio Ciofi, Gabriela Daňková, Peter Hollingsworth, Mara Lawniczak, Camila Mazzoni, Robert Waterhouse
Pubblicato in: Research Ideas and Outcomes, Numero 12, 2026, ISSN 2367-7163
Editore: Pensoft Publishers
DOI: 10.3897/RIO.12.E187550

First record of the cockroach Ectobius vittiventris (Costa, 1847) (Dictyoptera:Blattodea: Ectobiinae) from Poland and new data on its occurrence in Czechia

Autori: Przemysław Żurawlew, Robert Vlk, Anna Kapusta, Paweł Radzikowski, Michal Grabowski
Pubblicato in: FRAGMENTA FAUNISTICA, Numero 67, 2025, ISSN 0015-9301
Editore: Museum and Institute of Zoology at the Polish Academy of Sciences
DOI: 10.3161/00159301FF2024.67.2.113

Molecular phylogeny reveals three new water mite species of the genus Teutonia Koenike, 1889, from Portugal (Acari, Hydrachnidia, Teutoniidae)

Autori: Pešić, Vladimir; Konopleva, Ekaterina; Iannucci, Alessio; Ferreira, Sonia; Stur, Elisabeth
Pubblicato in: Systematic and Applied Acarology, 2025, ISSN 2056-6069
Editore: Systematic and Applied Acarology Society
DOI: 10.11158/SAA.30.2.14

ERGA-BGE genome of<i>Coenonympha oedippus</i>: an IUCN endangered European butterfly species occurring in two ecotypes

Autori: Tatjana Čelik, Tjaša Lokovšek, Elena Bužan, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Pubblicato in: 2025
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.02.10.637396

ERGA-BGE genome of<i>Erebia palarica</i>Chapman, 1905: a montane butterfly endemic to North-West Iberia

Autori: Marta Vila, Laura Torrado-Blanco, Nils Ryrholm, David Romero-Pedreira, María Conejero, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Laura Aguilera, Marta Gut, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Pubblicato in: 2025
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.08.631636

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

Autori: Ali Hakimzadeh, Alejandro Abdala Asbun, Davide Albanese, Maria Bernard, Dominik Buchner, Benjamin Callahan, J. Gregory Caporaso, Emily Curd, Christophe Djemiel, Mikael Brandström Durling, Vasco Elbrecht, Zachary Gold, Hyun S. Gweon, Mehrdad Hajibabaei, Falk Hildebrand, Vladimir Mikryukov, Eric Normandeau, Ezgi Özkurt, Jonathan M. Palmer, Géraldine Pascal, Teresita M. Porter, Daniel Straub, Martti Vasar, Tomáš Větrovský, Haris Zafeiropoulos, Sten Anslan
Pubblicato in: Molecular Ecology Resources, Numero 24, 2024, ISSN 1755-098X
Editore: Wiley
DOI: 10.1111/1755-0998.13847

Molecular phylogeny reveals three new water mite species of the genus Teutonia Koenike, 1889, from Portugal (Acari, Hydrachnidia, Teutoniidae)

Autori: Vladimir Pešić, Ekaterina S. Konopleva, Alessio Iannucci, Sónia Ferreira, Elisabeth Stur
Pubblicato in: Systematic and Applied Acarology, 2025, ISSN 2056-6069
Editore: Systematic and Applied Acarology Society
DOI: 10.11158/SAA.30.2.14

Insects

Autori: Peter Huemer; Kai Berggren; Leif Aarvik; Erwin Rennwald; Axel Hausmann; Andreas Segerer; Giorgia Staffoni; Aina Mærk Aspaas; Apostolos Trichas; Paul D. N. Hebert
Pubblicato in: Insects, 2025, ISSN 2075-4450
Editore: MDPI
DOI: 10.3390/INSECTS16050438

Under pressure: the Critically Endangered common hamster in Hungary reached an all-time demographic low in 2024

Autori: Lajos Szatmári, Gábor Sramkó, Virág Nyíri, Tamás Cserkész
Pubblicato in: Oryx, Numero 58, 2024, ISSN 0030-6053
Editore: Cambridge University Press (CUP)
DOI: 10.1017/S003060532400070X

The InBIO Barcoding Initiative Database: DNA barcodes of Iberian Bees

Autori: Wood T, Gaspar H, Divelec RL, Penado A, Silva TL, Mata V, Veríssimo J, Michez D, Castro S, Loureiro J, Beja P, Ferreira S
Pubblicato in: Biodiversity Data Journal, 2024, ISSN 1314-2828
Editore: 10.3897/BDJ.12.e117172
DOI: 10.3897/BDJ.12.E117172

Methods in Ecology and Evolution

Autori: Marius Hannes Eisele; Brendan Furneaux; Tomas Roslin; Otso Ovaskainen; Brent C. Emerson; Carmelo Andújar
Pubblicato in: Methods in Ecology and Evolution, 2025, ISSN 2041-210X
Editore: John Wiley and Sons Inc.
DOI: 10.1111/2041-210X.70159

Delimiting Species—Prospects and Challenges for <scp>DNA</scp> Barcoding

Autori: Brent C. Emerson
Pubblicato in: Molecular Ecology, Numero 34, 2025, ISSN 0962-1083
Editore: Wiley
DOI: 10.1111/MEC.17677

DNA barcode library of Portuguese water mites, with the descriptions of two new species (Acari, Hydrachnidia)

Autori: Vladimir Pešić, Andrzej Zawal, Sónia Ferreira, Laura Benitez-Bosco, Ana Cruz-Oliveira, Dinis Girão, Adriana Padilha, Paolo Turaccio, Samantha Rossini, Lorenzo Ballini, Giorgia Staffoni, Sara Fratini, Claudio Ciofi, Alessio Iannucci, Torbjørn Ekrem, Elisabeth Stur
Pubblicato in: ZooKeys, Numero 1217, 2024, ISSN 1313-2970
Editore: Pensoft Publishers
DOI: 10.3897/ZOOKEYS.1217.131730

The InBIO Barcoding Initiative Database: DNA barcodes of Orthoptera from Portugal

Autori: Sílvia Pina; Joana Pauperio; Francisco Barros; Cátia Chaves; Filipa MS Martins; Joana Pinto; Joana Veríssimo; Vanessa Mata; Pedro Beja; Sónia Ferreira
Pubblicato in: Biodiversity Data Journal, 2024, ISSN 1314-2828
Editore: Pensoft Publishers
DOI: 10.3897/BDJ.12.E118010

A new species of Torrenticola ungeri complex (Acari, Hydrachnidia, Torrenticolidae), and new water mite records for Portugal

Autori: Pešić, Vladimir; Girão, Dinis; Vergata, Chiara; da Silva, Luis P.; Ferreira, Sonia
Pubblicato in: Zootaxa, 2025, ISSN 1175-5334
Editore: Magnolia Press, Auckland, New Zealand
DOI: 10.11646/ZOOTAXA.5717.1.1

New records of aturid water mites from Portugal, with the integrative description of one new species (Acari, Hydrachnidia, Aturidae)

Autori: Vladimir Pešić, Harry Smit, Dinis Girão, Alessio Iannucci, Elisabeth Stur, Sónia Ferreira
Pubblicato in: Ecologica Montenegrina, Numero 80, 2024, ISSN 2336-9744
Editore: Institute for Biodiversity and Ecology
DOI: 10.37828/EM.2024.80.19

ERGA-BGE genome of the Spanish Moon Moth<i>Graellsia isabellae</i>Graells, 1849: a nocturnal lepidopteran protected by the Habitats Directive

Autori: Marta Vila, Neus Marí-Mena, Roger Vila, Ana Riesgo, Daniel García-Souto, Carlos Lopez-Vaamonde, Astrid Böhne, Rita Monteiro, Thomas Marcussen, Rebekah Oomen, Torsten Hugo Struck, Marta Gut, Laura Aguilera, Francisco Câmara Ferreira, Fernando Cruz Rodriguez, Jèssica Gómez-Garrido, Tyler S. Alioto, Chiara Bortoluzzi
Pubblicato in: 2025
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.08.631683

How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map

Autori: Andersson, L., Bekkevold, D., Berg, F., Farrell, E.D., Felkel, S., Ferreira, M., Fuentes-Pardo, A.P., Goodall, J., Pettersson, M.
Pubblicato in: Annual Review in Animal Biosciences, 2024, ISSN 2165-8102
Editore: Annual Reviews Inc.
DOI: 10.1146/ANNUREV-ANIMAL-021122-102933

ERGA-BGE genome of Cheirolophus tagananensis: an IUCN endangered shrub endemic to the Canary Islands

Autori: Jaume Pellicer, Teresa Garnatje, Daniel Vitales, Oriane Hidalgo, Joan Valles, Alfredo Garcia-Fernandez, Arnoldo Santos-Guerra, Astrid Bohne, Rita Monteiro, Rosa Fernandez, Nuria Escudero, null null, null null, null null, Abitha Thomas, Benjamin Jackson, Jonathan MD Wood, Kerstin Howe, Mark Blaxter, Shane McCarthy, Chiara Bortoluzzi
Pubblicato in: 2025
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.24.634661

The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae)

Autori: Paolo Rosa, Thomas Wood, Teresa Luísa L. Silva, Joana Veríssimo, Vanessa A. Mata, Denis Michez, Pedro Beja, Sónia Ferreira
Pubblicato in: The InBIO Barcoding Initiative Database: contribution to the knowledge on DNA barcodes of cuckoo wasps, with the description of new species from the Iberian Peninsula (Hymenoptera, Chrysididae), 2023, ISSN 1314-2828
Editore: Biodiversity Data Journal
DOI: 10.3897/BDJ.8.e55137FreePMCarticle

ERGA-BGE genome of Pinctada radiata (Leach, 1814): one of the first Lessepsian migrants

Autori: Katerina Vasileiadou, Tereza Manousaki, Thanos Dailianis, Grigorios Skouradakis, Emmanouela Vernadou, Danae Karakasi, Astrid Böhne, Rita Monteiro, Rosa Fernández, Nuria Escudero, Genoscope Sequencing Team, Alice Moussy, Corinne Cruaud, Karine Labadie, Lola Demirdjian, Benjamin Istace, Arnaud Couloux, Patrick Wincker, Pedro H Oliveira, Jean-Marc Aury, Leanne Haggerty, Swati Sinha, Fergal Martin, Chiara Bortoluzzi
Pubblicato in: 2025
Editore: Pensoft Publishers
DOI: 10.3897/ARPHAPREPRINTS.E154462

Exploring the water mite fauna (Acari, Hydrachnidia) of the Madeira archipelago: DNA Barcoding reveals a remarkable species endemicity

Autori: VLADIMIR PEŠIĆ; ANDRZEJ ZAWAL; ALEKSANDRA BANKOWSKA; RICARDO ARAÚJO; ŁUKASZ SŁUGOCKI; TOMASZ REWICZ; MAJA KRAKOWIAK; GRZEGORZ MICHOŃSKI; DINIS GIRÃO; LUIS P. DA SILVA; INÊS ÓRFÃO; PEDRO M. RAPOSEIRO; LORENZO BALLINI; ROBERT STRYJECKI; TORBJØRN EKREM; SÓNIA FERREIRA
Pubblicato in: Zootaxa, 2025, ISSN 1175-5334
Editore: Magnolia Press, Auckland, New Zealand
DOI: 10.11646/ZOOTAXA.5621.5.1

Other (6)

ERGA-BGE genome of<i>Valencia hispanica</i>(Valenciennes, 1826): a critically endangered Iberian toothcarp

Autori: Marc Ventura, Nati Franch, Rosa Fernández, Javier Palma-Guerrero, Astrid Böhne, Rita Monteiro, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Leanne Haggerty, Fergal Martin, Thomas Brown
Pubblicato in: 2024
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2024.07.31.604920

Harmonising genomics research excellence and stakeholder needs in conservation management

Autori: Elena Buzan, Christian de Guttry, Chiara Bortoluzzi, Nathaniel Street, Kay Lucek, Anna Rosling, Lino Ometto, Alice Mouton, Luísa Marins, María José Ruiz-López, José Melo-Ferreira, Elisabet Ottosson, Camila Mazzoni, Robert Waterhouse
Pubblicato in: 2024
Editore: Authorea, Inc.
DOI: 10.22541/au.172510123.38206942/v1

ERGA-BGE genome of<i>Stigmatoteuthis arcturi</i>Robson, 1948: the jewelled squid

Autori: Fernando Ángel Fernández-Álvarez, Ainhoa Bernal-Bajo, Nuria Escudero, María Conejero, Ana Riesgo, Rosa Fernández, Rita Monteiro, Astrid Böhne, Laura Aguilera, Marta Gut, Tyler S. Alioto, Francisco Câmara Ferreira, Fernando Cruz, Jèssica Gómez-Garrido, Tom Brown
Pubblicato in: 2025
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.13.632676

ERGA-BGE genome of<i>Androsace saussurei</i>Dentant, Lavergne, F. C. Boucher &amp; S. Ibanez, a recently described plant from the rooftops of Europe

Autori: Sébastien Lavergne, Alexy Rosa, Chuan Peng, Rita Monteiro, Astrid Böhne, Thomas Marcussen, Torsten Struck, Rebekah A. Oomen, null null, Alice Moussy, Corinne Cruaud, Karine Labadie, Emilie Téodori, Lola Demirdjian, Patrick Wincker, Pedro H. Oliveira, Jean-Marc Aury, Tom Brown
Pubblicato in: 2025
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.01.21.634019

ERGA-BGE Reference Genome of<i>Loboptera subterranea</i>: a cave adapted cockroach endemic to the Canary Islands

Autori: Heriberto López, Pedro Oromí, Xavier Belles, Guillem Ylla, Nuria Escudero, Rosa Fernández, Astrid Böhne, Marta Gut, Laura Aguilera, Tyler Alioto, Francisco Câmara Ferreira, Jèssica Gómez-Garrido, Fernando Cruz, Rita Monteiro
Pubblicato in: 2025, ISSN 2692-8205
Editore: Cold Spring Harbor Laboratory
DOI: 10.1101/2025.02.06.636782

Gap analysis on the implementation of reference genomes and genomics in conservation, bioeconomy and disease applications Intermediate report

Autori: Pimenta, João; Melo-Ferreira, José
Pubblicato in: 2025
Editore: Zenodo
DOI: 10.5281/ZENODO.18401133

Conference proceedings (1)

Genome Annotation and Other Post-Assembly Workflows for the Tree of Life

Autori: Tom Brown, Kathleen A. Collier, Fernando Cruz, Anestis Gkanogiannis, Sagane Joye-Dind, Yannis Nevers, Stepan Saenko, Tyler Alioto, Anthony Bretaudeau, Michael Charleston, Phuong Duy Doan, Christoph Hahn, Thomas W. Harrop, Katie E Herron, Fredrick Kebaso,
Pubblicato in: BioHackrXiv Preprints, 2024
Editore: BioHackrXiv.org
DOI: 10.37044/OSF.IO/FY49G