Long-TREC: The Long-Reads Transcriptomics European Consortium. The next generation transcriptome biology revealed by single molecule sequencing technologies

Información del proyecto

LongTREC

Identificador del acuerdo de subvención: 101072892

DOI

10.3030/101072892

Fecha de la firma de la CE 14 Julio 2022

Fecha de inicio 1 Octubre 2022

Fecha de finalización 30 Septiembre 2026

Financiado con arreglo a

• Marie Skłodowska-Curie Actions (MSCA)

Coste total

Sin datos

Aportación de la UE

€ 2 621 931,00

Coordinado por

AGENCIA ESTATAL CONSEJO SUPERIOR DE INVESTIGACIONES CIENTIFICAS
Spain

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Documents, reports (9)

Interim report including links to a protocol repository

Updated report on the state of library preparation, sequencing and mapping algorithm developments, including links to a protocol repository (i.e. protocols.io) and GitHub for code of novel mapping algorithms

Interim report on the state of algorithm developments in WP4 applied to use cases

Updated progress report on the state of algorithm developments in WP4, including a list of links to GitHub repositories containing code

Initial report on the state of algorithm developments in WP5
Interim report on the state of algorithm developed in WP5 and pipelines comparison

Updated progress report on the state of algorithm developments in WP5 and comparison of pipelines

Initial progress report on the state of algorithm developments in WP3

Progress report on the state of algorithm developments in WP3

Progress report on the state of library preparation, sequencing and mapping algorithm

Progress report on the state of library preparation, sequencing, and mapping algorithm developments.

Interim report on the state of algorithm developed in WP3, including benchmarks

Updated progress report on the state of algorithm developments in WP3, including a list of links to a GitHub repository containing code

Progress report on the state of algorithm developments in WP4
LongTREC website and social network profiles

Publicaciones

Peer reviewed articles (6)

IsoTools 2.0: Software for Comprehensive Analysis of Long-read Transcriptome Sequencing Data

Autores: Yalan Bi, Tom Lukas Lankenau, Matthias Lienhard, Ralf Herwig
Publicado en: Journal of Molecular Biology, 2025, ISSN 0022-2836
Editor: Elsevier BV
DOI: 10.1016/j.jmb.2025.169049

Icarust, a real-time simulator for Oxford Nanopore adaptive sampling

Autores: Rory Munro, Satrio Wibowo, Alexander Payne, Matthew Loose
Publicado en: Bioinformatics, Edición 40, 2024, ISSN 1367-4811
Editor: Oxford University Press (OUP)
DOI: 10.1093/bioinformatics/btae141

Long-read transcriptome sequencing of CLL and MDS patients uncovers molecular effects of<i>SF3B1</i>mutations

Autores: Alicja Pacholewska, Matthias Lienhard, Mirko Brüggemann, Heike Hänel, Lorina Bilalli, Anja Königs, Felix Heß, Kerstin Becker, Karl Köhrer, Jesko Kaiser, Holger Gohlke, Norbert Gattermann, Michael Hallek, Carmen D. Herling, Julian König, Christina Grimm, Ralf Herwig, Kathi Zarnack, Michal R. Schweiger
Publicado en: Genome Research, Edición 34, 2024, ISSN 1088-9051
Editor: Cold Spring Harbor Laboratory
DOI: 10.1101/GR.279327.124

Evidence-based unification of potato gene models with the UniTato collaborative genome browser

Autores: Maja Zagorščak, Jan Zrimec, Carissa Bleker, Nadja Nolte, Mojca Juteršek, Živa Ramšak, Kristina Gruden, Marko Petek
Publicado en: Frontiers in Plant Science, Edición 15, 2024, ISSN 1664-462X
Editor: Frontiers Media SA
DOI: 10.3389/FPLS.2024.1352253

Toward the use of nanopore RNA sequencing technologies in the clinic: challenges and opportunities

Autores: Xanthi-Lida Katopodi, Oguzhan Begik, Eva Maria Novoa
Publicado en: Nucleic Acids Research, Edición 53, 2025, ISSN 0305-1048
Editor: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAF128

Profiling the epigenome using long-read sequencing

Autores: Tianyuan Liu, Ana Conesa
Publicado en: Nature Genetics, Edición 57, 2025, ISSN 1061-4036
Editor: Springer Science and Business Media LLC
DOI: 10.1038/s41588-024-02038-5