Bioinformatics for Genomics in Malta

Project Information

BioGeMT

Grant agreement ID: 101086768

DOI

10.3030/101086768

EC signature date 24 October 2022

Start date 1 December 2022

End date 30 November 2027

Funded under

• Widening participation and spreading excellence

Total cost

€ 2 499 997,50

EU contribution

€ 2 499 997,50

Coordinated by

UNIVERSITA TA MALTA
Malta

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Documents, reports (3)

A plan for dissemination, exploitation and communication

A projected plan of dissemination activities to be held during the lifetime of the project will be drawn up.

A Scientific and Management Plan

Following a detailed internal assessment of the current infrastructure and genomic research at the UM the ERA Chair will develop a Scientific and Management plan that includes a strategy for the effective implementation of the BT. It is expected that the ERA Chair will include the relevant major -Omic and HTS projects currently underway at UM as described in Section 1.2.2.

Bioinformatics requirements (hardware and software) document

The ERA-Chair will set up one-to-one meetings with molecular biology research groups and identify local bioinformatics needs, and define computer storage and processing requirements of each project. The outcome of these meetings will generate the information required to satisfy this deliverable.

Websites, patent fillings, videos etc. (1)

Set-up of project website

A dedicated project website will be set up under the UM domain. This website will be maintained during the lifetime of the project.

Data Management Plan (1)

A Data Management Plan

A data management plan for bioinformatics projects at UM will be built and updated throughout the lifetime of the project.

Publications

Peer reviewed articles (8)

An Automated Analysis of Homocoupling Defects Using MALDI-MS and Open-Source Computer Software

Author(s): Maria Bochenek; Michał Aleksander Ciach; Sander Smeets; Omar Beckers; Jochen Vanderspikken; Błażej Miasojedow; Barbara Domżał; Dirk Valkenborg; Wouter Maes; Anna Gambin
Published in: Journal of the American Society for Mass Spectrometry, 2024, ISSN 1879-1123
Publisher: ACS Publications
DOI: 10.1021/JASMS.4C00225

Multiomics tools for improved atherosclerotic cardiovascular disease management

Author(s): Sopic, M; Vilne, B; Gerdts, E; Trindade, F; Uchida, S; Khatib, S; Bezzina Wettinger, S; Devaux, Y; Magni, P
Published in: Trends in Molecular Medicine, 2023, ISSN 1471-4914
Publisher: Cell Press
DOI: 10.1016/j.molmed.2023.09.004

Identification of genes used by Escherichia coli to mitigate climatic stress conditions

Author(s): Roufou, Styliani; Griffin, Sholeem; Katsini, Lydia; Polanska, Monika; Van Impe, Jan F.M.; Alexiou, Panagiotis; Valdramidis, Vasilis P.
Published in: Gene Reports, 2024, ISSN 2452-0144
Publisher: Elsevier BV
DOI: 10.1016/J.GENREP.2024.101998

Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes

Author(s): Vaculík, Ondřej; Chalupová, Eliška; Grešová, Katarína; Majtner, Tomáš; Alexiou, Panagiotis
Published in: Biology, 2023, ISSN 2079-7737
Publisher: MDPI
DOI: 10.3390/biology12101276

RBP-Tar – a searchable database for experimental RBP binding sites

Author(s): Grešová, Katarína; Racek, Tomas; Martinek, Vlastimil; Cechak, David; Svobodova, Radka; Alexiou, Panagiotis
Published in: F1000Research, 2023, ISSN 2046-1402
Publisher: F1000 Research Ltd
DOI: 10.12688/f1000research.131014.1

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

Author(s): Vlastimil Martinek; Jessica Martin; Cedric Belair; Matthew J Payea; Sulochan Malla; Panagiotis Alexiou; Manolis Maragkakis
Published in: NAR Genomics and Bioinformatics, 2023, ISSN 2631-9268
Publisher: Oxford Academic
DOI: 10.1101/2023.11.17.567581

Identification of osteoporosis genes using family studies

Author(s): Marichela Schembri; Melissa M. Formosa; Melissa M. Formosa
Published in: Frontiers in Endocrinology, 2024, ISSN 1664-2392
Publisher: Frontiers Media
DOI: 10.3389/FENDO.2024.1455689

Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation

Author(s): Hejret, Vaclav; Varadarajan, Nandan Mysore; Klimentova, Eva; Gresova, Katarina; Giassa, Ilektra-Chara; Vanacova, Stepanka; Alexiou, Panagiotis
Published in: Scientific Reports, 2023, ISSN 2045-2322
Publisher: Nature Portfolio
DOI: 10.1038/s41598-023-49757-z

Other (1)

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

Author(s): Martinek, V; Martin, J; Belair, C; Payea, MJ; Malla, S; Alexiou, P; Maragkakis, M
Published in: bioRxiv, 2023, ISSN 2692-8205
Publisher: bioRxiv
DOI: 10.1101/2023.11.17.567581