CORDIS oferuje możliwość skorzystania z odnośników do publicznie dostępnych publikacji i rezultatów projektów realizowanych w ramach programów ramowych HORYZONT.
Odnośniki do rezultatów i publikacji związanych z poszczególnymi projektami 7PR, a także odnośniki do niektórych konkretnych kategorii wyników, takich jak zbiory danych i oprogramowanie, są dynamicznie pobierane z systemu OpenAIRE .
Rezultaty
The recruitment of the BT will be coordinated by the ERA Chair assisted by the UM HRM&D following the protocol described in Section 1.2.1. It is expected that BT members will be recruited during the first 12 months of the project and proof or recruitment of team members will be submitted for this deliverable.
A letter confirming move of the ERA-Chair to a full-time post at the UM (odnośnik otworzy się w nowym oknie)The ERA-Chair will move to the UM to take up a full-time post within the University. The UM will provide confirmation that this move has taken place.
The BT will support bioinformatics requirements of multiple UM research groups. A member of the BT with the relevant skill set will be assigned to assist on each of the projects identified, spending a portion of their time on the assigned project working closely with researchers from the relevant UM group. This deliverable will be a list of the research groups/projects being supported and the BT member assigned to this role.
A report on training requirements and action plan (odnośnik otworzy się w nowym oknie)The needs of UM research groups will be surveyed to assess current background bioinformatics knowledge in areas that are fundamental for data analysis and interpretation, including: computer programming, Big Data processing and visualisation, awareness of publicly available resources and tools and knowledge of statistical methods. The need for professional training in grant and publication writing will also be assessed. A report will be drawn up summarising the information gathered from these activities and outlining a training action plan, and submitted as this deliverable
A plan for dissemination, exploitation and communication (odnośnik otworzy się w nowym oknie)A projected plan of dissemination activities to be held during the lifetime of the project will be drawn up.
A Scientific and Management Plan (odnośnik otworzy się w nowym oknie)Following a detailed internal assessment of the current infrastructure and genomic research at the UM the ERA Chair will develop a Scientific and Management plan that includes a strategy for the effective implementation of the BT. It is expected that the ERA Chair will include the relevant major -Omic and HTS projects currently underway at UM as described in Section 1.2.2.
Bioinformatics requirements (hardware and software) document (odnośnik otworzy się w nowym oknie)The ERA-Chair will set up one-to-one meetings with molecular biology research groups and identify local bioinformatics needs, and define computer storage and processing requirements of each project. The outcome of these meetings will generate the information required to satisfy this deliverable.
A consolidated ethics protocol for HTS work in a multi-Omic era (odnośnik otworzy się w nowym oknie)For this deliverable, an ethics protocol for high throughput sequencing work in a multi-Omic era approved by the University Research Ethics Committee will be set up with consent forms and information letters that can be readily adapted to multiple projects.
A dedicated project website will be set up under the UM domain. This website will be maintained during the lifetime of the project.
A data management plan for bioinformatics projects at UM will be built and updated throughout the lifetime of the project.
Publikacje
Autorzy:
Vlastimil Martinek, Andrea Gariboldi, Dimosthenis Tzimotoudis, Aitor Alberdi Escudero, Edward Blake, David Cechak, Luke Cassar, Alessandro Balestrucci, Panagiotis Alexiou
Opublikowane w:
2025
Wydawca:
Arxiv
DOI:
10.48550/ARXIV.2506.05542
Autorzy:
Stephanie Sammut, Katarina Gresova, Dimosthenis Tzimotoudis, Eva Marsalkova, David Cechak, Panagiotis Alexiou
Opublikowane w:
2025, ISSN 2692-8205
Wydawca:
Cold Spring Harbor Laboratory
DOI:
10.1101/2024.11.14.623628
Autorzy:
Martinek, V; Martin, J; Belair, C; Payea, MJ; Malla, S; Alexiou, P; Maragkakis, M
Opublikowane w:
bioRxiv, 2023, ISSN 2692-8205
Wydawca:
bioRxiv
DOI:
10.1101/2023.11.17.567581
Autorzy:
Maria Bochenek; Michał Aleksander Ciach; Sander Smeets; Omar Beckers; Jochen Vanderspikken; Błażej Miasojedow; Barbara Domżał; Dirk Valkenborg; Wouter Maes; Anna Gambin
Opublikowane w:
Journal of the American Society for Mass Spectrometry, 2024, ISSN 1879-1123
Wydawca:
ACS Publications
DOI:
10.1021/JASMS.4C00225
Autorzy:
Sopic, M; Vilne, B; Gerdts, E; Trindade, F; Uchida, S; Khatib, S; Bezzina Wettinger, S; Devaux, Y; Magni, P
Opublikowane w:
Trends in Molecular Medicine, 2023, ISSN 1471-4914
Wydawca:
Cell Press
DOI:
10.1016/j.molmed.2023.09.004
Autorzy:
Victoria Stopa, Dimitra Dafou, Korina Karagianni, A. Yaël Nossent, Rosienne Farrugia, Yvan Devaux, Miron Sopic
Opublikowane w:
Vascular Pharmacology, Numer 159, 2025, ISSN 1537-1891
Wydawca:
Elsevier BV
DOI:
10.1016/J.VPH.2025.107496
Autorzy:
Stephanie Sammut, Katarina Gresova, Dimosthenis Tzimotoudis, Eva Marsalkova, David Cechak, Panagiotis Alexiou
Opublikowane w:
Bioinformatics, Numer 41, 2025, ISSN 1367-4811
Wydawca:
Oxford University Press (OUP)
DOI:
10.1093/BIOINFORMATICS/BTAF233
Autorzy:
Piotr Radziński, Jakub Skrajny, Maurycy Moczulski, Michał A. Ciach, Dirk Valkenborg, Benjamin Balluff, Anna Gambin
Opublikowane w:
Analytical Chemistry, Numer 97, 2025, ISSN 1520-6882
Wydawca:
American Chemical Society (ACS)
DOI:
10.1021/ACS.ANALCHEM.4C06913
Autorzy:
Roufou, Styliani; Griffin, Sholeem; Katsini, Lydia; Polanska, Monika; Van Impe, Jan F.M.; Alexiou, Panagiotis; Valdramidis, Vasilis P.
Opublikowane w:
Gene Reports, 2024, ISSN 2452-0144
Wydawca:
Elsevier BV
DOI:
10.1016/J.GENREP.2024.101998
Autorzy:
Stephanie Bezzina Wettinger, Kanita Karaduzovic-Hadziabdic, Ritienne Attard, Rosienne Farrugia, Brooke N Wolford, Marco Chierici, Giuseppe Jurman, Panagiotis Alexiou, José L Peñalvo, Rafael S Costa,
Opublikowane w:
Briefings in Bioinformatics, Numer 26, 2025, ISSN 1477-4054
Wydawca:
Oxford University Press (OUP)
DOI:
10.1093/BIB/BBAF526
Autorzy:
Vaculík, Ondřej; Chalupová, Eliška; Grešová, Katarína; Majtner, Tomáš; Alexiou, Panagiotis
Opublikowane w:
Biology, 2023, ISSN 2079-7737
Wydawca:
MDPI
DOI:
10.3390/biology12101276
Autorzy:
Grešová, Katarína; Racek, Tomas; Martinek, Vlastimil; Cechak, David; Svobodova, Radka; Alexiou, Panagiotis
Opublikowane w:
F1000Research, 2023, ISSN 2046-1402
Wydawca:
F1000 Research Ltd
DOI:
10.12688/f1000research.131014.1
Autorzy:
Vlastimil Martinek; Jessica Martin; Cedric Belair; Matthew J Payea; Sulochan Malla; Panagiotis Alexiou; Manolis Maragkakis
Opublikowane w:
NAR Genomics and Bioinformatics, 2023, ISSN 2631-9268
Wydawca:
Oxford Academic
DOI:
10.1101/2023.11.17.567581
Autorzy:
Panagiotis Alexiou, Joel Azzopardi, Claude Julien Bajada, Jean-Paul Ebejer, Gillian M. Martin, Nikolai Paul Pace
Opublikowane w:
The American Journal of Bioethics, Numer 25, 2025, ISSN 1536-0075
Wydawca:
Informa UK Limited
DOI:
10.1080/15265161.2025.2470694
Autorzy:
Marichela Schembri; Melissa M. Formosa; Melissa M. Formosa
Opublikowane w:
Frontiers in Endocrinology, 2024, ISSN 1664-2392
Wydawca:
Frontiers Media
DOI:
10.3389/FENDO.2024.1455689
Autorzy:
Hejret, Vaclav; Varadarajan, Nandan Mysore; Klimentova, Eva; Gresova, Katarina; Giassa, Ilektra-Chara; Vanacova, Stepanka; Alexiou, Panagiotis
Opublikowane w:
Scientific Reports, 2023, ISSN 2045-2322
Wydawca:
Nature Portfolio
DOI:
10.1038/s41598-023-49757-z
Autorzy:
Panagiotis Alexiou, Aleksandra Gruca, José Basílio, Kanita Karaduzovic-Hadziabdic, David P. Kreil, Stephanie Bezzina Wettinger
Opublikowane w:
Transcriptomics in Atherosclerosis, 2025
Wydawca:
Elsevier
DOI:
10.1016/B978-0-443-33064-3.00008-6
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