Bioinformatics for Genomics in Malta

Información del proyecto

BioGeMT

Identificador del acuerdo de subvención: 101086768

DOI

10.3030/101086768

Fecha de la firma de la CE 24 Octubre 2022

Fecha de inicio 1 Diciembre 2022

Fecha de finalización 30 Noviembre 2027

Financiado con arreglo a

• Widening participation and spreading excellence

Coste total

€ 2 499 997,50

Aportación de la UE

€ 2 499 997,50

Coordinado por

UNIVERSITA TA MALTA
Malta

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Resultado final

Documents, reports (3)

A plan for dissemination, exploitation and communication

A projected plan of dissemination activities to be held during the lifetime of the project will be drawn up.

A Scientific and Management Plan

Following a detailed internal assessment of the current infrastructure and genomic research at the UM the ERA Chair will develop a Scientific and Management plan that includes a strategy for the effective implementation of the BT. It is expected that the ERA Chair will include the relevant major -Omic and HTS projects currently underway at UM as described in Section 1.2.2.

Bioinformatics requirements (hardware and software) document

The ERA-Chair will set up one-to-one meetings with molecular biology research groups and identify local bioinformatics needs, and define computer storage and processing requirements of each project. The outcome of these meetings will generate the information required to satisfy this deliverable.

Websites, patent fillings, videos etc. (1)

Set-up of project website

A dedicated project website will be set up under the UM domain. This website will be maintained during the lifetime of the project.

Data Management Plan (1)

A Data Management Plan

A data management plan for bioinformatics projects at UM will be built and updated throughout the lifetime of the project.

Publicaciones

Peer reviewed articles (8)

An Automated Analysis of Homocoupling Defects Using MALDI-MS and Open-Source Computer Software

Autores: Maria Bochenek; Michał Aleksander Ciach; Sander Smeets; Omar Beckers; Jochen Vanderspikken; Błażej Miasojedow; Barbara Domżał; Dirk Valkenborg; Wouter Maes; Anna Gambin
Publicado en: Journal of the American Society for Mass Spectrometry, 2024, ISSN 1879-1123
Editor: ACS Publications
DOI: 10.1021/JASMS.4C00225

Multiomics tools for improved atherosclerotic cardiovascular disease management

Autores: Sopic, M; Vilne, B; Gerdts, E; Trindade, F; Uchida, S; Khatib, S; Bezzina Wettinger, S; Devaux, Y; Magni, P
Publicado en: Trends in Molecular Medicine, 2023, ISSN 1471-4914
Editor: Cell Press
DOI: 10.1016/j.molmed.2023.09.004

Identification of genes used by Escherichia coli to mitigate climatic stress conditions

Autores: Roufou, Styliani; Griffin, Sholeem; Katsini, Lydia; Polanska, Monika; Van Impe, Jan F.M.; Alexiou, Panagiotis; Valdramidis, Vasilis P.
Publicado en: Gene Reports, 2024, ISSN 2452-0144
Editor: Elsevier BV
DOI: 10.1016/J.GENREP.2024.101998

Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes

Autores: Vaculík, Ondřej; Chalupová, Eliška; Grešová, Katarína; Majtner, Tomáš; Alexiou, Panagiotis
Publicado en: Biology, 2023, ISSN 2079-7737
Editor: MDPI
DOI: 10.3390/biology12101276

RBP-Tar – a searchable database for experimental RBP binding sites

Autores: Grešová, Katarína; Racek, Tomas; Martinek, Vlastimil; Cechak, David; Svobodova, Radka; Alexiou, Panagiotis
Publicado en: F1000Research, 2023, ISSN 2046-1402
Editor: F1000 Research Ltd
DOI: 10.12688/f1000research.131014.1

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

Autores: Vlastimil Martinek; Jessica Martin; Cedric Belair; Matthew J Payea; Sulochan Malla; Panagiotis Alexiou; Manolis Maragkakis
Publicado en: NAR Genomics and Bioinformatics, 2023, ISSN 2631-9268
Editor: Oxford Academic
DOI: 10.1101/2023.11.17.567581

Identification of osteoporosis genes using family studies

Autores: Marichela Schembri; Melissa M. Formosa; Melissa M. Formosa
Publicado en: Frontiers in Endocrinology, 2024, ISSN 1664-2392
Editor: Frontiers Media
DOI: 10.3389/FENDO.2024.1455689

Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation

Autores: Hejret, Vaclav; Varadarajan, Nandan Mysore; Klimentova, Eva; Gresova, Katarina; Giassa, Ilektra-Chara; Vanacova, Stepanka; Alexiou, Panagiotis
Publicado en: Scientific Reports, 2023, ISSN 2045-2322
Editor: Nature Portfolio
DOI: 10.1038/s41598-023-49757-z

Other (1)

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

Autores: Martinek, V; Martin, J; Belair, C; Payea, MJ; Malla, S; Alexiou, P; Maragkakis, M
Publicado en: bioRxiv, 2023, ISSN 2692-8205
Editor: bioRxiv
DOI: 10.1101/2023.11.17.567581