Bioinformatics for Genomics in Malta

Projektinformationen

BioGeMT

ID Finanzhilfevereinbarung: 101086768

DOI

10.3030/101086768

EK-Unterschriftsdatum 24 Oktober 2022

Startdatum 1 Dezember 2022

Enddatum 30 November 2027

Finanziert unter

• Widening participation and spreading excellence

Gesamtkosten

€ 2 499 997,50

EU-Beitrag

€ 2 499 997,50

Koordiniert durch

UNIVERSITA TA MALTA
Malta

CORDIS bietet Links zu öffentlichen Ergebnissen und Veröffentlichungen von HORIZONT-Projekten.

Links zu Ergebnissen und Veröffentlichungen von RP7-Projekten sowie Links zu einigen Typen spezifischer Ergebnisse wie Datensätzen und Software werden dynamisch von OpenAIRE abgerufen.

Leistungen

Documents, reports (3)

A plan for dissemination, exploitation and communication

A projected plan of dissemination activities to be held during the lifetime of the project will be drawn up.

A Scientific and Management Plan

Following a detailed internal assessment of the current infrastructure and genomic research at the UM the ERA Chair will develop a Scientific and Management plan that includes a strategy for the effective implementation of the BT. It is expected that the ERA Chair will include the relevant major -Omic and HTS projects currently underway at UM as described in Section 1.2.2.

Bioinformatics requirements (hardware and software) document

The ERA-Chair will set up one-to-one meetings with molecular biology research groups and identify local bioinformatics needs, and define computer storage and processing requirements of each project. The outcome of these meetings will generate the information required to satisfy this deliverable.

Websites, patent fillings, videos etc. (1)

Set-up of project website

A dedicated project website will be set up under the UM domain. This website will be maintained during the lifetime of the project.

Data Management Plan (1)

A Data Management Plan

A data management plan for bioinformatics projects at UM will be built and updated throughout the lifetime of the project.

Veröffentlichungen

Peer reviewed articles (8)

An Automated Analysis of Homocoupling Defects Using MALDI-MS and Open-Source Computer Software

Autoren: Maria Bochenek; Michał Aleksander Ciach; Sander Smeets; Omar Beckers; Jochen Vanderspikken; Błażej Miasojedow; Barbara Domżał; Dirk Valkenborg; Wouter Maes; Anna Gambin
Veröffentlicht in: Journal of the American Society for Mass Spectrometry, 2024, ISSN 1879-1123
Herausgeber: ACS Publications
DOI: 10.1021/JASMS.4C00225

Multiomics tools for improved atherosclerotic cardiovascular disease management

Autoren: Sopic, M; Vilne, B; Gerdts, E; Trindade, F; Uchida, S; Khatib, S; Bezzina Wettinger, S; Devaux, Y; Magni, P
Veröffentlicht in: Trends in Molecular Medicine, 2023, ISSN 1471-4914
Herausgeber: Cell Press
DOI: 10.1016/j.molmed.2023.09.004

Identification of genes used by Escherichia coli to mitigate climatic stress conditions

Autoren: Roufou, Styliani; Griffin, Sholeem; Katsini, Lydia; Polanska, Monika; Van Impe, Jan F.M.; Alexiou, Panagiotis; Valdramidis, Vasilis P.
Veröffentlicht in: Gene Reports, 2024, ISSN 2452-0144
Herausgeber: Elsevier BV
DOI: 10.1016/J.GENREP.2024.101998

Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes

Autoren: Vaculík, Ondřej; Chalupová, Eliška; Grešová, Katarína; Majtner, Tomáš; Alexiou, Panagiotis
Veröffentlicht in: Biology, 2023, ISSN 2079-7737
Herausgeber: MDPI
DOI: 10.3390/biology12101276

RBP-Tar – a searchable database for experimental RBP binding sites

Autoren: Grešová, Katarína; Racek, Tomas; Martinek, Vlastimil; Cechak, David; Svobodova, Radka; Alexiou, Panagiotis
Veröffentlicht in: F1000Research, 2023, ISSN 2046-1402
Herausgeber: F1000 Research Ltd
DOI: 10.12688/f1000research.131014.1

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

Autoren: Vlastimil Martinek; Jessica Martin; Cedric Belair; Matthew J Payea; Sulochan Malla; Panagiotis Alexiou; Manolis Maragkakis
Veröffentlicht in: NAR Genomics and Bioinformatics, 2023, ISSN 2631-9268
Herausgeber: Oxford Academic
DOI: 10.1101/2023.11.17.567581

Identification of osteoporosis genes using family studies

Autoren: Marichela Schembri; Melissa M. Formosa; Melissa M. Formosa
Veröffentlicht in: Frontiers in Endocrinology, 2024, ISSN 1664-2392
Herausgeber: Frontiers Media
DOI: 10.3389/FENDO.2024.1455689

Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation

Autoren: Hejret, Vaclav; Varadarajan, Nandan Mysore; Klimentova, Eva; Gresova, Katarina; Giassa, Ilektra-Chara; Vanacova, Stepanka; Alexiou, Panagiotis
Veröffentlicht in: Scientific Reports, 2023, ISSN 2045-2322
Herausgeber: Nature Portfolio
DOI: 10.1038/s41598-023-49757-z

Other (1)

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

Autoren: Martinek, V; Martin, J; Belair, C; Payea, MJ; Malla, S; Alexiou, P; Maragkakis, M
Veröffentlicht in: bioRxiv, 2023, ISSN 2692-8205
Herausgeber: bioRxiv
DOI: 10.1101/2023.11.17.567581