Integration of single-cell multi-omics data across space and time to unlock cellular trajectories

Project Information

MULTIview-CELL

Grant agreement ID: 101115618

DOI

10.3030/101115618

EC signature date 28 September 2023

Start date 1 April 2024

End date 31 March 2029

Funded under

• European Research Council (ERC)

Total cost

€ 1 285 938,00

EU contribution

€ 1 285 938,00

Coordinated by

CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
France

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Deliverables

Data Management Plan (1)

Data Management Plan

Drafting of the Data Management Plan

Publications

Peer reviewed articles (4)

CIRCE: a scalable Python package to predict cis-regulatory DNA interactions from single-cell chromatin accessibility data

Author(s): Rémi Trimbour, Julio Saez-Rodriguez, Laura Cantini
Published in: Bioinformatics, Issue 42, 2026, ISSN 1367-4811
Publisher: Oxford University Press (OUP)
DOI: 10.1093/BIOINFORMATICS/BTAG092

STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport

Author(s): Geert-Jan Huizing, Jules Samaran, Daniele Capocefalo, Anna Audit, Gabriel Peyré, Laura Cantini
Published in: Nature Methods, 2025, ISSN 1548-7091
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41592-025-02855-4

Nature Communications

Author(s): Samaran, Jules; Peyré, Gabriel; Cantini, Laura
Published in: Nature Communications, 2024, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1101/2024.02.26.582051

Nature Communications

Author(s): Jérémie Kalfon; Jules Samaran; Gabriel Peyré; Laura Cantini
Published in: Nature Communications, 2024, ISSN 2041-1723
Publisher: Nature portfolio
DOI: 10.1101/2024.07.29.605556

Conference proceedings (1)

Towards foundation models that learn across biological scales

Author(s): Jeremie Kalfon, Laura Cantini, Gabriel Peyre
Published in: 2026
Publisher: openRxiv
DOI: 10.1101/2025.05.16.653447