Unravelling the eukaryotic post-transcriptional regulatory code

Project Information

EPIC

Grant agreement ID: 101118521

DOI

10.3030/101118521

EC signature date 15 December 2023

Start date 1 July 2024

End date 30 June 2030

Funded under

• European Research Council (ERC)

Total cost

€ 9 989 247,00

EU contribution

€ 9 989 247,00

Coordinated by

VIB VZW
Belgium

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (6)

Nucleotide dependency analysis of genomic language models detects functional elements

Author(s): Pedro Tomaz da Silva, Alexander Karollus, Johannes Hingerl, Gihanna Sta. Teresa Galindez, Nils Wagner, Xavier Hernandez-Alias, Danny Incarnato, Julien Gagneur
Published in: Nature Genetics, Issue 57, 2025, ISSN 1061-4036
Publisher: Springer Science and Business Media LLC
DOI: 10.1038/S41588-025-02347-3

Intron location and sequence modulate gene expression in <i>Yarrowia lipolytica</i>

Author(s): Qi Qi, Pedro Tomaz da Silva, Vasileios Vangalis, Seppe Dockx, Jan Steensels, Karin Voordeckers, Julien Gagneur, Kevin J Verstrepen
Published in: Nucleic Acids Research, Issue 54, 2026, ISSN 0305-1048
Publisher: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAG650

Flashzoi: an enhanced Borzoi for accelerated genomic analysis

Author(s): Johannes C. Hingerl; Alexander Karollus; Julien Gagneur
Published in: Bioinformatics, 2025, ISSN 1367-4811
Publisher: Oxford Academic
DOI: 10.1101/2024.12.18.629121

Nature Methods

Author(s): Johannes C. Hingerl; Laura D. Martens; Alexander Karollus; Trevor Manz; Jason D. Buenrostro; Fabian J. Theis; Julien Gagneur
Published in: Nature Methods, 2025, ISSN 1548-7091
Publisher: Nature
DOI: 10.1038/S41592-025-02854-5

Current Biology

Author(s): Peter W. Bircham; Andrea Del Cortona; Lars Marius Garshol; Mohammed T. Tawfeeq; Beatriz Herrera-Malaver; Sofie Mannaerts; Jeroen Cortebeeck; Robbe Nolmans; Brigida Gallone; Anton Gorkovskiy; Michael Abrouk; Jan Steensels; Kevin J. Verstrepen
Published in: Current Biology, 2026, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/J.CUB.2026.03.030

Ribosomes modulate transcriptome abundance via generalized frameshift and out-of-frame mRNA decay

Author(s): Yujie Zhang, Lilit Nersisyan, Eliska Fürst, Ioannis Alexopoulos, Carlos Santolaria, Susanne Huch, Claudio Bassot, Elena Garre, Per Sunnerhagen, Ilaria Piazza, Vicent Pelechano
Published in: Molecular Cell, Issue 85, 2025, ISSN 1097-2765
Publisher: Elsevier BV
DOI: 10.1016/J.MOLCEL.2025.04.022