Center for Artificial Intelligence and Quantum Computing in System Brain Research

CORDIS fornisce collegamenti ai risultati finali pubblici e alle pubblicazioni dei progetti ORIZZONTE.

I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Pubblicazioni

Moldina: a fast and accurate search algorithm for simultaneous docking of multiple ligands

Autori: Radek Halfar, Jiří Damborský, Sérgio M. Marques, Jan Martinovič
Pubblicato in: Journal of Cheminformatics, Numero 17, 2025, ISSN 1758-2946
Editore: Springer Science and Business Media LLC
DOI: 10.1186/S13321-025-01005-4

A control-driven transition strategy for enhanced multi-level threshold image segmentation optimization

Autori: Laith Abualigah, Mohammad H. Almomani, Saleh Ali Alomari, Raed Abu Zitar, Vaclav Snasel, Kashif Saleem, Aseel Smerat, Absalom E. Ezugwu
Pubblicato in: Egyptian Informatics Journal, Numero 30, 2025, ISSN 1110-8665
Editore: Elsevier BV
DOI: 10.1016/J.EIJ.2025.100646

Differentiating long QT syndrome genotypes using electrocardiographic geometric parameterization and machine learning approaches.

Autori: Srutova M, Lhotska L, Kremen V.
Pubblicato in: Biomed Phys Eng Express, Numero 12, 2026, ISSN 2057-1976
Editore: Biomed Phys Eng Express
DOI: 10.1088/2057-1976/AE58AE

Improved spatial memory for physical versus virtual navigation

Autori: Shachar Maidenbaum, Vaclav Kremen, Vladimir Sladky, Kai Miller, Jamie Van Gompel, Gregory A Worrell, Joshua Jacobs
Pubblicato in: Journal of Neural Engineering, Numero 22, 2025, ISSN 1741-2560
Editore: IOP Publishing
DOI: 10.1088/1741-2552/ADE6AA

Anticipating protein evolution with successor sequence predictor

Autori: Rayyan Tariq Khan, Pavel Kohout, Milos Musil, Monika Rosinska, Jiri Damborsky, Stanislav Mazurenko, David Bednar
Pubblicato in: Journal of Cheminformatics, Numero 17, 2025, ISSN 1758-2946
Editore: Springer Nature
DOI: 10.1186/S13321-025-00971-Z

Assessing the impact of His-tags on activity and stability of staphylokinase variants

Autori: Monika Štulajterová, Ľuboš Ambro, Dagmar Sedláková, Michal Nemergut, Pavel Kohout, Stanislav Mazurenko, Rastislav Varhač, Alan Strunga, Martin Toul, Zbyněk Prokop, Jiří Damborský, Mária Tomková, Erik Sedlák
Pubblicato in: International Journal of Biological Macromolecules, Numero 328, 2025, ISSN 0141-8130
Editore: Elsevier BV
DOI: 10.1016/J.IJBIOMAC.2025.147655

Electrocardiographic Discrimination of Long QT Syndrome Genotypes: A Comparative Analysis and Machine Learning Approach

Autori: Martina Srutova, Vaclav Kremen, Lenka Lhotska
Pubblicato in: Sensors, Numero 25, 2025, ISSN 1424-8220
Editore: MDPI Open Access Journals
DOI: 10.3390/S25072253

Enhancing skin cancer detection through category representation and fusion of pre-trained models

Autori: Lingping Kong, Juan D. Velasquez, Václav Snášel, Millie Pant, Jeng-Shyang Pan, Jana Nowakova
Pubblicato in: Information Fusion, Numero 124, 2025, ISSN 1566-2535
Editore: Elsevier BV
DOI: 10.1016/J.INFFUS.2025.103369

Benchmarking 3D generative autoencoders for pseudo-healthy reconstruction of brain 18F-fluorodeoxyglucose positron emission tomography

Autori: Ravi Hassanaly; Maëlys Solal; Olivier Colliot; Ninon Burgos; for the Alzheimer’s Disease Neuroimaging Initiative
Pubblicato in: Journal of Medical Imaging, Numero 12, 2025, ISSN 2329-4302
Editore: SPIE
DOI: 10.1117/1.JMI.12.5.054005

Thrombolytic proteins profiling: High‐throughput activity, selectivity, and resistance assays

Autori: Martin Toul, Alan Strunga, Jiri Damborsky, Zbynek Prokop
Pubblicato in: FEBS Open Bio, Numero 16, 2025, ISSN 2211-5463
Editore: Wiley
DOI: 10.1002/2211-5463.70132

Confidence intervals for performance estimates in brain MRI segmentation

Autori: Rosana El Jurdi, Gaël Varoquaux, Olivier Colliot
Pubblicato in: Medical Image Analysis, Numero 103, 2025, ISSN 1361-8415
Editore: Elsevier BV
DOI: 10.1016/J.MEDIA.2025.103565

Post-Ictal Sleep Changes in Human Focal Epilepsy

Autori: Vaclav Kremen, Vladimir Sladky, Vaclav Gerla, Yurui Cao, Filip Mivalt, Erik K. St. Louis, Mark R. Bower, Benjamin H. Brinkmann, Kai Miller, Jamie VanGompel, Mark Cook, Tim Denison, Kent Leyde, Gregory A. Worrell
Pubblicato in: The Journal of Neuroscience, Numero 46, 2026, ISSN 0270-6474
Editore: Society for Neuroscience
DOI: 10.1523/JNEUROSCI.0303-25.2026

Thalamic Stimulation Induced Changes in Network Connectivity and Excitability in Epilepsy

Autori: Nicholas M. Gregg, Gabriela Ojeda Valencia, Tereza Pridalova, Harvey Huang, Vaclav Kremen, Brian N. Lundstrom, Jamie J. Van Gompel, Kai J. Miller, Gregory A. Worrell, Dora Hermes
Pubblicato in: Annals of Neurology, Numero 99, 2025, ISSN 0364-5134
Editore: Wiley
DOI: 10.1002/ANA.78087

Comparing foundation models and nnU-Net for segmentation of primary brain lymphoma on clinical routine post-contrast T1-weighted MRI

Autori: Fu, Guanghui; Nichelli, Lucia; Herran, Dario; Valabregue, Romain; Alentorn, Agusti; Hoang-Xuan, Khê; Houillier, Caroline; Dormont, Didier; Lehéricy, Stéphane; Colliot, Olivier
Pubblicato in: Medical Imaging 2025: Clinical and Biomedical Imaging, 2025, ISSN 2410-9045
Editore: SPIE Medical Imaging
DOI: 10.1117/12.3044679

Perspective: Emerging challenges for a future ADNI

Autori: Zaven Khachaturian, Maria C. Carrillo, Ara S. Khachaturian
Pubblicato in: Alzheimer's & Dementia, Numero 21, 2026, ISSN 1552-5260
Editore: Wiley Periodicals LLC
DOI: 10.1002/ALZ.14534

Decoding Protein Stabilization: Impact on Aggregation, Solubility, and Unfolding Mechanisms

Autori: Martin Havlásek, Sérgio M. Marques, Veronika Szotkowská, Antonín Kunka, Petra Babková, Jiří Damborský, Zbyněk Prokop, David Bednář
Pubblicato in: Journal of Chemical Information and Modeling, Numero 65, 2025, ISSN 1549-9596
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACS.JCIM.5C00611

Tryptophanase Mining and Characterization toward the Biological Production of Indole Derivatives

Autori: Ruben M. de Boer, David Harding-Larsen, Stanislav Mazurenko, Ditte Hededam Welner
Pubblicato in: ACS Omega, Numero 11, 2026, ISSN 2470-1343
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACSOMEGA.5C11382

Applying machine-learning and deep-learning to predict depression from brain MRI and identify depression-related brain biology

Autori: Jiayue-Clara Jiang, Camille Brianceau, Elise Delzant, Romain Colle, Hugo Bottemanne, Emmanuelle Corruble, Naomi R. Wray, Olivier Colliot, Sonia Shah, Baptiste Couvy-Duchesne
Pubblicato in: Translational Psychiatry, Numero 16, 2026, ISSN 2158-3188
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41398-026-03889-8

FireProtDB 2.0: large-scale manually curated database of the protein stability data

Autori: Milos Musil, Simeon Borko, Joan Planas-Iglesias, David Lacko, Monika Rosinska, Petr Kabourek, Lígia O Martins, Mateusz Tataruch, Jiri Damborsky, Stanislav Mazurenko, David Bednar
Pubblicato in: Nucleic Acids Research, Numero 54, 2025, ISSN 0305-1048
Editore: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAF1211

EEG foundation models: a critical review of current progress and future directions

Autori: Gayal Kuruppu, Neeraj Wagh, Vaclav Kremen, Yogatheesan Varatharajah
Pubblicato in: Journal of Neural Engineering, Numero 23, 2026, ISSN 1741-2560
Editore: IOP Publishing
DOI: 10.1088/1741-2552/AE4455

Refining the AOP for retinoid-induced teratogenicity: Insights into RAR/RXR overactivation and RXR cross-talk with retinoic acid and thyroid hormone signaling

Autori: Audrey Phan, Elise Pesce, Lisa Baumann, Petra Polakovičová, David Bednář, Marie Smutná, Jiří Novák, Klára Hilscherová
Pubblicato in: Aquatic Toxicology, Numero 289, 2025, ISSN 0166-445X
Editore: Elsevier BV
DOI: 10.1016/J.AQUATOX.2025.107608

False Promises in Medical Imaging AI? Assessing Validity of Outperformance Claims

Autori: Evangelia Christodoulou, Annika Reinke, Pascaline Andrè, Patrick Godau, Piotr Kalinowski, Rola Houhou, Selen Erkan, Carole H Sudre, Ninon Burgos, Sofiène Boutaj, Sophie Loizillon, Maëlys Solal, Veronika Cheplygina, Charles Heitz, Michal Kozubek, Michela A
Pubblicato in: arXiv preprint, 2025, ISSN 2331-8422
Editore: arXiv
DOI: 10.48550/ARXIV.2505.04720

Acridine-Based Chalcone 1C and ABC Transporters

Autori: Franko, O., Čižmáriková, M., Kello, M., Michalková, R., Wesołowska, O., Środa-Pomianek, K., Marques, S. M., Bednář, D., Háziková, V., Liška, T. J., & Habalová, V.
Pubblicato in: International Journal Of Molecular Sciences, Numero 26, 2025, ISSN 1661-6596
Editore: MDPI Open Access Journals
DOI: 10.3390/IJMS26094138

Analysis of mutations in precision oncology using the automated, accurate, and user-friendly web tool PredictONCO

Autori: Rayyan Tariq Khan, Petra Pokorna, Jan Stourac, Simeon Borko, Adam Dobias, Joan Planas-Iglesias, Stanislav Mazurenko, Ihor Arefiev, Gaspar Pinto, Veronika Szotkowska, Jaroslav Sterba, Jiri Damborsky, Ondrej Slaby, David Bednar
Pubblicato in: Computational and Structural Biotechnology Journal, Numero 24, 2026, ISSN 2001-0370
Editore: American Association for the Advancement of Science (AAAS)
DOI: 10.1016/J.CSBJ.2024.11.026

Optimized image segmentation using an improved reptile search algorithm with Gbest operator for multi-level thresholding

Autori: Laith Abualigah, Nada Khalil Al-Okbi, Saleh Ali Alomari, Mohammad H. Almomani, Sahar Moneam, Maryam A. Yousif, Vaclav Snasel, Kashif Saleem, Aseel Smerat, Absalom E. Ezugwu
Pubblicato in: Scientific Reports, Numero 15, 2025, ISSN 2045-2322
Editore: Springer Nature
DOI: 10.1038/S41598-025-96429-1

Caver Web 2.0: analysis of tunnels and ligand transport in dynamic ensembles of proteins

Autori: Sérgio M Marques, Simeon Borko, Ondrej Vavra, Jan Dvorsky, Petr Kohout, Petr Kabourek, Lukas Hejtmanek, Jiri Damborsky, David Bednar
Pubblicato in: Nucleic Acids Research, Numero 53, 2025, ISSN 0305-1048
Editore: Oxford University Press (OUP)
DOI: 10.1093/NAR/GKAF399

Concentration‐dependent dimerization of staphylokinase variants with engineered surface charges

Autori: Michal Nemergut, Monika Štulajterová, Rostislav Škrabana, Andrej Hovan, L'uboš Ambro, Alan Strunga, Zbyněk Prokop, Jiří Damborský, Mária Tomková, Erik Sedlák
Pubblicato in: Protein Science, Numero 35, 2026, ISSN 0961-8368
Editore: Wiley
DOI: 10.1002/PRO.70494

Modulating limbic circuits in temporal lobe epilepsy: impacts on seizures, memory, mood and sleep

Autori: Vaclav Kremen, Vladimir Sladky, Filip Mivalt, Nicholas M Gregg, Benjamin H Brinkmann, Irena Balzekas, Victoria Marks, Michal Kucewicz, Brian Nils Lundstrom, Jie Cui, Erik K St Louis, Paul Croarkin, Eva C Alden, Boney Joseph, Julie Fields, Karla Crockett, Jindrich Adolf, Jordan Bilderbeek, Dora Hermes, Steven Messina, Kai Joshua Miller, Jamie Van Gompel, Timothy Denison, Gregory A Worrell
Pubblicato in: Brain Communications, Numero 7, 2025, ISSN 2632-1297
Editore: Oxford University Press (OUP)
DOI: 10.1093/BRAINCOMMS/FCAF106

Automatic Segmentation of Primary Central Nervous System Lymphoma at Clinical Routine Postcontrast T1-weighted MRI

Autori: Guanghui Fu; Lucia Nichelli; Darío Herrán de la Gala; Sophie Loizillon; Camile Bousfiha; Romain Valabregue; Agusti Alentorn; Khê Hoang-Xuan; Bertrand Mathon; Carole Soussain; Jean Pierre Marolleau; Jérôme Paillassa; Luc Taillandier; Philippe Agapé; Anna Schmitt; Olivier Chinot; Guido Ahle; Didier Dormont; Caroline Houillier; Stéphane Lehéricy; Olivier Colliot; Caroline Houillier; Sylvain Choquet; Khê Hoang-Xuan; Valérie Touitou; Carole Soussain; Nathalie Cassoux; Denis Malaise; Renata Ursu; Lise Willems; Hervé Ghesquières; Anna Schmitt; Olivier Chinot; Emeline Tabouret; Luc Taillandier; Marie Blonski; Roch Houot; Guido Ahle; Gandhi Damaj; Cécile Molucon-Chabrot; Vincent Delwail; Michel Fabbro; Fabrice Jardin; Adrien Chauchet; Franck Morschhauser; Olivier Casasnovas; Rémy Gressin; Luc-Matthieu Fornecker; Julie Abraham; Jean-Pierre Marolleau; Adrian Tempescul; Philippe Agapé; Lucie Oberic; Emmanuel Gyan; Frédéric Peyrade; Thomas Gastinne
Pubblicato in: Radiology: Imaging Cancer, Numero 7, 2025, ISSN 2638-616X
Editore: RSNA
DOI: 10.1148/RYCAN.240446

Journal of Cheminformatics

Autori: Rayyan T. Khan; Pavel Kohout; Milos Musil; Monika Rosinska; Jirí Damborský; Stanislav Mazurenko; David Bednar
Pubblicato in: Journal of Cheminformatics, 2025, ISSN 1758-2946
Editore: Chemistry Central
DOI: 10.1101/2024.06.08.598054

The exposome of brain aging across 34 countries

Autori: Agustina Legaz, Sebastian Moguilner, Pablo Barttfeld, Jhosmary Cuadros Castro, Dante Sebastián Galván Rial, Joaquin Migeot, Francesca R. Farina, Raul Gonzalez-Gomez, Salomón Salazar-Londoño, Tiago de Souza Azzi, Sarael Alcauter, Lucia Amoruso, Renato Anghinah, May Bakr, María Isabel Behrens, Martin A. Bruno, Juan Felipe Cardona, Christopher Chen, Olivier Colliot, Nilton Custodio, Quentin d’Acremont, Stéphanie Debette, Patrycja Dzianok, Bahar Güntekin, Jordi Huguet, Cecilia Jarne, Marc Joliot, Elissaios Karageorgiou, Eman M. Khedr, Sheri-Michelle Koopowitz, Ewa Kublik, Jinkook Lee, Leon Aksman, Susanna Lopez, Paula Margaretic, Diana Matallana, Sophie Matis, Andreas Miltiadous, Gabriela Novotni, Patricio Orio, Mario A. Parra, Simone Reppermund, Elisa de Paula França Resende, Giovanni Abrahão Salum, Andrea Slachevsky, Ana Luisa Sosa Ortiz, Leonel Tadao Takada, An Qi Toh, Alexandros Tzallas, Wei Wen, Robert Whelan, Görsev Yener, Jonathan Adrián Zegarra Valdivia, Athanasia Alexoudi, Faheem Arshad, Haisam Atta, Jose Alberto Avila-Funes, Jasmin Bonilla Santos, Ricardo Bruña, Sandra Milena Castelblanco-Toro, Brenda Nadia Chino Vilca, Carlos Coronel-Oliveros, Fabrice Crivello, Josephine Cruzat, Damián Dellavale, Catherina Dhooge, Gaetano Di Caterina, Javier Escudero, Juan Manuel Esquivias Farias, Laz Ude Eze, Tavia E. Evans, Temitope Farombi, Alberto Fernández, Sol Fittipaldi, Florencia Portillo, Gonzalo Forno Martinic, Adolfo M. García, Indira Garcia-Cordero, Rahul Gaurav, Maria Eugenia Godoy, Cecilia Gonzalez Campo, Alfredis González Hernández, Lütfü Hanoğlu, Jessica L. Hazelton, Rubén Herzog, Burcin Ikiz, Alfred Kongnyu Njamnshi, Ramon Landin-Romero, María Eugenia López, Marcelo Adrián Maito, Vicente Medel, Juan Pablo Morales Sepúlveda, John Fredy Ochoa Gómez, Chukwuanugo Ogbuagu, Maira Okada de Oliveira, Mehmet Ozansoy, Javier Palma-Espinosa, Saima Hilal, Juan Helen Zhou, Stefanie Danielle Piña Escudero, Julie Kay Pitman, Pavel Prado, Diego Ramírez González, Pablo Reyes, Hernando Santamaría García, Johannes Schröder, Jacobo Diego Sitt, Radwa Kamel Soliman, Marcio Soto-Añari, Nithin Thanissery, Lucas Toshio Ito, Ami Tsuchida, Christophe Tzourio, Harun Yırıkoğulları, Jennifer S. Yokoyama, David Aguillon, Bruce Miller, Suvarna Alladi, Yang Jiang, Arcadi Navarro, Claudio Babiloni, David Huepe Artigas, Olivier Piguet, Pedro Antonio Valdes Sosa, Cyprian M. Mostert, Masoud Tahmasian, Peng Li, Kun Hu, Sarah Genon, Dan J. Stein, Fernando Maestú, Michela Pievani, Mohamed Salama, Henry Brodaty, Perminder S. Sachdev, Brian Lawlor, Harris A. Eyre, J. Jaime Miranda, Sandra Baez, Enzo Tagliazucchi, Claudia Duran-Aniotz, Hernan Hernandez, Agustin Ibanez
Pubblicato in: Nature Medicine, Numero 32, 2026, ISSN 1078-8956
Editore: Springer Science and Business Media LLC
DOI: 10.1038/S41591-026-04302-Z

Structure Prediction and Computational Protein Design for Efficient Biocatalysts and Bioactive Proteins

Autori: Rebecca Buller, Jiri Damborsky, Donald Hilvert, Uwe T. Bornscheuer
Pubblicato in: Angewandte Chemie International Edition, Numero 64, 2024, ISSN 1433-7851
Editore: Wiley
DOI: 10.1002/ANIE.202421686

Experimentally validated deep learning control of protein aggregation

Autori: Vojtech Cima, Antonin Kunka, Joan Planas-Iglesias, Ekaterina Grakova, Martin Havlasek, Madhumalar Subramanian, Michal Beloch, Martin Marek, Katerina Slaninova, Jiri Damborsky, Zbynek Prokop, David Bednar & Jan Martinovic
Pubblicato in: Communications Chemistry, 2026, ISSN 2399-3669
Editore: Nature Portfolio
DOI: 10.1038/S42004-026-02007-5

Quantifying multimodal longitudinal brain changes in presymptomatic <i>C9orf72</i> disease

Autori: Dario Saracino, Lorenzo Cipriano, Marion Houot, Giorgia Querin, Daisy Rinaldi, Armelle Rametti‐Lacroux, David Wallon, Emmanuel Gerardin, Philippe Couratier, Marie‐Paule Boncoeur, Thibaud Lebouvier, null null, Olivier Colliot, Pierre‐François Pradat, Raffaella Migliaccio, Isabelle Le Ber
Pubblicato in: Alzheimer's & Dementia, Numero 21, 2025, ISSN 1552-5260
Editore: Wiley
DOI: 10.1002/ALZ.70902

Automated Engineering Protein Dynamics via Loop Grafting: Improving <i>Renilla</i> Luciferase Catalysis

Autori: Joan Planas-Iglesias, Marika Majerova, Daniel Pluskal, Michal Vasina, Jiri Damborsky, Zbynek Prokop, Martin Marek, David Bednar
Pubblicato in: ACS Catalysis, Numero 15, 2025, ISSN 2155-5435
Editore: American Chemical Society (ACS)
DOI: 10.1021/ACSCATAL.4C06207

Haloalkane dehalogenases other than LinB can contribute to the γ-hexachlorocyclohexane utilization

Autori: Nannan Chen, Kouhei Kishida, Leonardo Stari, Ryota Moriuchi, Yoshiyuki Ohtsubo, Jiri Damborsky, Yuji Nagata
Pubblicato in: Bioscience, Biotechnology, and Biochemistry, Numero 89, 2025, ISSN 1347-6947
Editore: Oxford University Press (OUP)
DOI: 10.1093/BBB/ZBAF022

Artificial intelligence in presymptomatic neurological diseases: Bridging normal variation and prodromal signatures

Autori: T. Soulier, N. Burgos, R. Hassanaly, M. Pitombeira, M. Solal, H. Roy, M. Hamzaoui, A. Yazdan-Panah, D. de Paula Faria, C. Louapre, B. Bodini, M. Bottlaender, N. Ayache, O. Colliot, B. Stankoff
Pubblicato in: Revue Neurologique, Numero 181, 2025, ISSN 0035-3787
Editore: Elsevier BV
DOI: 10.1016/J.NEUROL.2025.07.011

Perspective on “Brain Network Disorders”

Autori: Zaven Khachaturian, Jean-Marie C. Boutellier, Jiri Damborsky, Ara S. Khachaturian
Pubblicato in: Brain Network Disorders, Numero 1, 2025, ISSN 3050-6239
Editore: Elsevier BV
DOI: 10.1016/J.BND.2024.12.002

Building a brain watch

Autori: Ara S. Khachaturian
Pubblicato in: The Journal of Aging Research & Lifestyle, Numero 14, 2025, ISSN 2534-773X
Editore: Elsevier Masson SAS
DOI: 10.1016/J.JARLIF.2025.100013

Artificial intelligence-driven translational medicine: a machine learning framework for predicting disease outcomes and optimizing patient-centric care

Autori: Abualigah, L., Alomari, S. A., Almomani, M. H., Zitar, R. A., Saleem, K., Migdady, H., Snasel, V., Smerat, A., & Ezugwu, A. E.
Pubblicato in: Journal of Translational Medicine, Numero 23, 2025, ISSN 1479-5876
Editore: BioMed Central
DOI: 10.1186/S12967-025-06308-6

OpenSpindleNet: An open-source deep learning network for reliable sleep spindle detection in scalp and intracranial EEG

Autori: Michal Sejak, Filip Mivalt, Vladimir Sladky, Vit Vsiansky, Diego Z. Carvalho, Erik K. St. Louis, Gregory A. Worrell, Vaclav Kremen
Pubblicato in: Computers in Biology and Medicine, Numero 197, 2026, ISSN 0010-4825
Editore: Elsevier BV
DOI: 10.1016/J.COMPBIOMED.2025.110854

GAN-based bone suppression using a combined loss function

Autori: Lukáš Jochymek, Markéta Vašinková, Vít Doleží, Petr Gajdoš
Pubblicato in: Frontiers in Artificial Intelligence, Numero 9, 2026, ISSN 2624-8212
Editore: Frontiers Media SA
DOI: 10.3389/FRAI.2026.1761336

Engineering Dehalogenase Enzymes Using Variational Autoencoder-Generated Latent Spaces and Microfluidics

Autori: Pavel Kohout, Michal Vasina, Marika Majerova, Veronika Novakova, Jiri Damborsky, David Bednar, Martin Marek, Zbynek Prokop, Stanislav Mazurenko
Pubblicato in: JACS Au, Numero 5, 2025, ISSN 2691-3704
Editore: American Chemical Society (ACS)
DOI: 10.1021/JACSAU.4C01101

One protein is all you need

Autori: Anton Bushuiev, Roman Bushuiev, Olga Pimenova, Nikola Zadorozhny, Raman Samusevich, Elisabet Manaskova, Rachel Seongeun Kim, Hannes Stark, Jiri Sedlar, Martin Steinegger, Tomas Pluskal, Josef Sivic.
Pubblicato in: 2026
Editore: ICLR
DOI: 10.48550/ARXIV.2411.02109

Unsupervised anomaly detection using Bayesian flow networks: application to brain FDG pet in the context of Alzheimer’s disease

Autori: Hugues Roy, Reuben Dorent, Ninon Burgos
Pubblicato in: Lecture Notes in Computer Science: Deep Generative Models, Numero 16128, 2025, ISBN 978-3-032-05472-2
Editore: Springer Nature Switzerland
DOI: 10.1007/978-3-032-05472-2_25

Generalization Beyond Benchmarks: Evaluating Learnable Protein-Ligand Scoring Functions on Unseen Targets.

Autori: Jakub Kopko, David Graber, Saltuk Mustafa Eyrilmez, Stanislav Mazurenko, David Bednar, Jiri Sedlar, Josef Sivic.
Pubblicato in: NeurIPS2025 workshop, 2025
Editore: NeurIPS
DOI: 10.48550/ARXIV.2512.05386

CLARA Testbed: HPCQC Infrastructure to Accelerate Research in Brain Science and Neurodegenerative Diseases

Autori: Vondrák, Vít; Slaninová, Kateřina; Martinovič, Jan; Hachinger, Stephan
Pubblicato in: Supercomputing Asia 2026, 2026
Editore: Zenodo
DOI: 10.5281/ZENODO.19631032

Large-scale Pre-training for Grounded Video Caption Generation

Autori: E Kazakos, C Schmid, J Sivic
Pubblicato in: ICCV, 2025
Editore: ICCV
DOI: 10.48550/ARXIV.2503.10781

Investigating Machine Learning for Scalable Molecular Dynamics and Evolution-Aware Protein Design

Autori: Kohout, P., Casadevall, G., Damborsky, J., Osuna, S. & Mazurenko, S.
Pubblicato in: 2025
Editore: COZYME

IRrIS – A VERSATILE BIOIMAGING TOOL INSPIRED BY A NATURE-EVOLVED BIOLUMINESCENCE RESONANCE ENERGY TRANSFER COMPLEX

Autori: Pluskal, D., Smrčková, A., Bárta, T., Damborský, J. & Marek, M.
Pubblicato in: 2025
Editore: Czech Chemical Society

Machine Learning Analysis Reveals Dynamic Remodeling of Hippocampal Interictal Spikes in Temporal Lobe Epilepsy

Autori: V Sladky, V Kremen, F Mivalt, NM Gregg, BH Brinkmann, GA Worrell
Pubblicato in: ILAE, 2025
Editore: ILAE

Safer and More Effective Thrombolytics: Brnoteplase Through Rational Mutagenesis.

Autori: Mičan, J., Toul, M., Strunga, A., Slonková, V., Thalerová, S., Pešková, M., Kittová, P., Scheer, P., Hložková, J., Brhelová, E., Nikitin, D., Marek, M., Víteček, J., Kašpárek, P., Hložánková, M., Kubala, L., Mikulík, R., Damborský, J., Prokop, Z., & Bedná
Pubblicato in: 2025
Editore: SageJournals
DOI: 10.1177/09226028251367822

Comparing Longitudinal Preprocessing Pipelines for Brain Volume Consistency in T1-Weighted MRI Test-Retest Scans

Autori: Joulot, Matthieu; Colliot, Olivier; Burgos, Ninon
Pubblicato in: SPIE Medical Imaging, 2026, ISSN 2410-9045
Editore: SPIE Medical Imaging

From Data Integration to Discovery: A Transparent, AI-Driven Framework for Multidisciplinary Brain Research

Autori: J.-M. C. Bouteiller, A. Kakolla, A. S. Khachaturian, Z. Khachaturian, V. Dockal, V. Snasel
Pubblicato in: 2025
Editore: SfN 2025

A Comprehensive Neurotechnology Platform for Brain Network Sensing and Stimulation: Optimizing Limbic Circuit Epilepsy Therapy with Quantitative Behavioral Tracking

Autori: Vaclav Kremen, Vlad Sladky, Filip Mivalt, Irena Balzekas, Nicholas Gregg, Brian Lundstrom, Benjamin Brinkmann, Erik St. Louis, Jamie Van Gompel, Kai Miller, Timothy Denison, Gregory Worrell
Pubblicato in: AES 2024, 2024
Editore: American Epilepsy Society

Poster: CLARA Testbed: HPCQC Infrastructure to Accelerate Research inBrain Science and Neurodegenerative Diseases

Autori: Vít Vondrák, Kateřina Slaninová, Jan Martinovič, and Stephan Hachinger
Pubblicato in: 2026
Editore: Zenodo
DOI: 10.5281/ZENODO.19631032

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