Virus discovery and epidemic tracing from high throughput metagenomic sequencing

Información del proyecto

VIROGENESIS

Identificador del acuerdo de subvención: 634650

DOI 10.3030/634650

Proyecto cerrado

Fecha de la firma de la CE 27 Marzo 2015

Fecha de inicio 1 Junio 2015

Fecha de finalización 31 Mayo 2018

Financiado con arreglo a

• SOCIETAL CHALLENGES - Health, demographic change and well-being

Coste total € 2 995 969,98

Aportación de la UE € 2 995 968,74

Coordinado por

KATHOLIEKE UNIVERSITEIT LEUVEN
Belgium

Resultado final

Other (12)

GUI Epidemiological analysis tools for pilot study
Epidemiological tracing tool
GUI entire platform for pilot study

GUI entire platform for pilot study

Virome comparison tool
Report on use of HPM for NGS data analysis
Pan-viral typing tool
NGS assembly tool
Classification tool
Phylogenetic analysis method for reticulation
GUI NGS assembly tool for pilot study
GUI Virome comparison tools for pilot study
GUI Pan-viral typing tool for pilot study

Documents, reports (4)

Colloquium
Plan for the dissemination and exploitation of results
Report pilot studies
Training module NGS data analysis

Publicaciones

Peer reviewed articles (7)

Phylogenetic analysis as a forensic tool in HIV transmission investigations

Autores: Ana B. Abecasis, Marta Pingarilho, Anne-Mieke Vandamme
Publicado en: AIDS, 2018, Página(s) 1, ISSN 0269-9370
Editor: Lippincott Williams & Wilkins Ltd.
DOI: 10.1097/QAD.0000000000001728

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

Autores: Filip Bielejec, Guy Baele, Bram Vrancken, Marc A. Suchard, Andrew Rambaut, Philippe Lemey
Publicado en: Molecular Biology and Evolution, Edición 33/8, 2016, Página(s) 2167-2169, ISSN 0737-4038
Editor: Oxford University Press
DOI: 10.1093/molbev/msw082

Virus genomes reveal factors that spread and sustained the Ebola epidemic

Autores: Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D’Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adri
Publicado en: Nature, Edición 544/7650, 2017, Página(s) 309-315, ISSN 0028-0836
Editor: Nature Publishing Group
DOI: 10.1038/nature22040

The multi-faceted dynamics of HIV-1 transmission in Northern Alberta: A combined analysis of virus genetic and public health data

Autores: B. Vrancken, D. Adachi, M. Benedet, A. Singh, R. Read, S. Shafran, G.D. Taylor, K. Simmonds, C. Sikora, P. Lemey, C.L. Charlton, J.W. Tang
Publicado en: Infection, Genetics and Evolution, Edición 52, 2017, Página(s) 100-105, ISSN 1567-1348
Editor: Elsevier BV
DOI: 10.1016/j.meegid.2017.04.005

Challenges in the analysis of viral metagenomes

Autores: Rebecca Rose, Bede Constantinides, Avraam Tapinos, David L Robertson, Mattia Prosperi
Publicado en: Virus Evolution, Edición 2/2, 2016, Página(s) vew022, ISSN 2057-1577
Editor: Oxford Journals
DOI: 10.1093/ve/vew022

Visual programming for next-generation sequencing data analytics

Autores: Franco Milicchio, Rebecca Rose, Jiang Bian, Jae Min, Mattia Prosperi
Publicado en: BioData Mining, Edición 9/1, 2016, ISSN 1756-0381
Editor: BioMed Central
DOI: 10.1186/s13040-016-0095-3

Genome Sequences of a Novel Vietnamese Bat Bunyavirus

Autores: Bas B. Oude Munnink, My V. T. Phan, Lia van der Hoek, Paul Kellam, Matthew Cotten
Publicado en: Genome Announcements, Edición 4/6, 2016, Página(s) e01366-16, ISSN 2169-8287
Editor: Genome Announcements
DOI: 10.1128/genomeA.01366-16