Virus discovery and epidemic tracing from high throughput metagenomic sequencing

Informazioni relative al progetto

VIROGENESIS

ID dell’accordo di sovvenzione: 634650

DOI 10.3030/634650

Progetto chiuso

Data della firma CE 27 Marzo 2015

Data di avvio 1 Giugno 2015

Data di completamento 31 Maggio 2018

Finanziato da

• SOCIETAL CHALLENGES - Health, demographic change and well-being

Costo totale € 2 995 969,98

Contributo UE € 2 995 968,74

Coordinato da

KATHOLIEKE UNIVERSITEIT LEUVEN
Belgium

Risultati finali

Other (12)

GUI Epidemiological analysis tools for pilot study
Epidemiological tracing tool
GUI entire platform for pilot study

GUI entire platform for pilot study

Virome comparison tool
Report on use of HPM for NGS data analysis
Pan-viral typing tool
NGS assembly tool
Classification tool
Phylogenetic analysis method for reticulation
GUI NGS assembly tool for pilot study
GUI Virome comparison tools for pilot study
GUI Pan-viral typing tool for pilot study

Documents, reports (4)

Colloquium
Plan for the dissemination and exploitation of results
Report pilot studies
Training module NGS data analysis

Pubblicazioni

Peer reviewed articles (7)

Phylogenetic analysis as a forensic tool in HIV transmission investigations

Autori: Ana B. Abecasis, Marta Pingarilho, Anne-Mieke Vandamme
Pubblicato in: AIDS, 2018, Pagina/e 1, ISSN 0269-9370
Editore: Lippincott Williams & Wilkins Ltd.
DOI: 10.1097/QAD.0000000000001728

SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes

Autori: Filip Bielejec, Guy Baele, Bram Vrancken, Marc A. Suchard, Andrew Rambaut, Philippe Lemey
Pubblicato in: Molecular Biology and Evolution, Numero 33/8, 2016, Pagina/e 2167-2169, ISSN 0737-4038
Editore: Oxford University Press
DOI: 10.1093/molbev/msw082

Virus genomes reveal factors that spread and sustained the Ebola epidemic

Autori: Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D’Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adri
Pubblicato in: Nature, Numero 544/7650, 2017, Pagina/e 309-315, ISSN 0028-0836
Editore: Nature Publishing Group
DOI: 10.1038/nature22040

The multi-faceted dynamics of HIV-1 transmission in Northern Alberta: A combined analysis of virus genetic and public health data

Autori: B. Vrancken, D. Adachi, M. Benedet, A. Singh, R. Read, S. Shafran, G.D. Taylor, K. Simmonds, C. Sikora, P. Lemey, C.L. Charlton, J.W. Tang
Pubblicato in: Infection, Genetics and Evolution, Numero 52, 2017, Pagina/e 100-105, ISSN 1567-1348
Editore: Elsevier BV
DOI: 10.1016/j.meegid.2017.04.005

Challenges in the analysis of viral metagenomes

Autori: Rebecca Rose, Bede Constantinides, Avraam Tapinos, David L Robertson, Mattia Prosperi
Pubblicato in: Virus Evolution, Numero 2/2, 2016, Pagina/e vew022, ISSN 2057-1577
Editore: Oxford Journals
DOI: 10.1093/ve/vew022

Visual programming for next-generation sequencing data analytics

Autori: Franco Milicchio, Rebecca Rose, Jiang Bian, Jae Min, Mattia Prosperi
Pubblicato in: BioData Mining, Numero 9/1, 2016, ISSN 1756-0381
Editore: BioMed Central
DOI: 10.1186/s13040-016-0095-3

Genome Sequences of a Novel Vietnamese Bat Bunyavirus

Autori: Bas B. Oude Munnink, My V. T. Phan, Lia van der Hoek, Paul Kellam, Matthew Cotten
Pubblicato in: Genome Announcements, Numero 4/6, 2016, Pagina/e e01366-16, ISSN 2169-8287
Editore: Genome Announcements
DOI: 10.1128/genomeA.01366-16