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Substrate import at work: single-molecule studies of ABC transporters

Publicaciones

Single-Molecule Observation of Ligand Binding and Conformational Changes in FeuA

Autores: Marijn de Boer, Giorgos Gouridis, Yusran Abdillah Muthahari, Thorben Cordes
Publicado en: Biophysical Journal, Edición 117/9, 2019, Página(s) 1642-1654, ISSN 0006-3495
Editor: Biophysical Society
DOI: 10.1016/j.bpj.2019.08.005

Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers

Autores: Marijn de Boer, Giorgos Gouridis, Ruslan Vietrov, Stephanie L Begg, Gea K Schuurman-Wolters, Florence Husada, Nikolaos Eleftheriadis, Bert Poolman, Christopher A McDevitt, Thorben Cordes
Publicado en: eLife, Edición 8, 2019, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.44652

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

Autores: Eitan Lerner, Anders Barth, Jelle Hendrix, Benjamin Ambrose, Victoria Birkedal, Scott C Blanchard, Richard Börner, Hoi Sung Chung, Thorben Cordes, Timothy D Craggs, Ashok A Deniz, Jiajie Diao, Jingyi Fei, Ruben L Gonzalez, Irina V Gopich, Taekjip Ha, Christian A Hanke, Gilad Haran, Nikos S Hatzakis, Sungchul Hohng, Seok-Cheol Hong, Thorsten Hugel, Antonino Ingargiola, Chirlmin Joo, Achillefs N Ka
Publicado en: eLife, Edición 10, 2021, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.60416

ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data

Autores: Jochem H. Smit, Yichen Li, Eliza M. Warszawik, Andreas Herrmann, Thorben Cordes
Publicado en: PLOS ONE, Edición 14/6, 2019, Página(s) e0217524, ISSN 1932-6203
Editor: Public Library of Science
DOI: 10.1371/journal.pone.0217524

Characterization of fluorescent proteins with intramolecular photostabilization

Autores: Sarah S. Henrikus; Konstantinos Tassis; Lei Zhang; Jasper H. M. van der Velde; Christian Gebhardt; Andreas Herrmann; Gregor Jung; Thorben Cordes
Publicado en: ChemBioChem, Edición 1, 2021, Página(s) 1-2, ISSN 1439-7633
Editor: Wiley-VCH
DOI: 10.1101/2020.03.07.980722

Self-Healing Dyes—Keeping the Promise?

Autores: Michael Isselstein, Lei Zhang, Viktorija Glembockyte, Oliver Brix, Gonzalo Cosa, Philip Tinnefeld, Thorben Cordes
Publicado en: The Journal of Physical Chemistry Letters, Edición 11/11, 2020, Página(s) 4462-4480, ISSN 1948-7185
Editor: American Chemical Society
DOI: 10.1021/acs.jpclett.9b03833

ABCE1 Controls Ribosome Recycling by an Asymmetric Dynamic Conformational Equilibrium

Autores: Giorgos Gouridis, Bianca Hetzert, Kristin Kiosze-Becker, Marijn de Boer, Holger Heinemann, Elina Nürenberg-Goloub, Thorben Cordes, Robert Tampé
Publicado en: Cell Reports, Edición 28/3, 2019, Página(s) 723-734.e6, ISSN 2211-1247
Editor: Cell Press
DOI: 10.1016/j.celrep.2019.06.052

Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

Autores: Eitan Lerner, Thorben Cordes, Antonino Ingargiola, Yazan Alhadid, SangYoon Chung, Xavier Michalet, Shimon Weiss
Publicado en: Science, Edición 359/6373, 2018, Página(s) eaan1133, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.aan1133

Konformationsbewegungen von aktiven Membrantransportern

Autores: Rebecca Mächtel, Christian Gebhardt, Thorben Cordes
Publicado en: BIOspektrum, Edición 24/5, 2018, Página(s) 495-497, ISSN 0947-0867
Editor: Spektrum Akademischer Verlag GmbH
DOI: 10.1007/s12268-018-0945-2

Self-healing dyes for super-resolution fluorescence microscopy

Autores: Jasper H M van der Velde, Jochem H Smit, Elke Hebisch, Michiel Punter, Thorben Cordes
Publicado en: Journal of Physics D: Applied Physics, Edición 52/3, 2019, Página(s) 034001, ISSN 0022-3727
Editor: Institute of Physics Publishing
DOI: 10.1088/1361-6463/aae752

On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores

Autores: Jochem H. Smit, Jasper H. M. van der Velde, Jingyi Huang, Vanessa Trauschke, Sarah S. Henrikus, Si Chen, Nikolaos Eleftheriadis, Eliza M. Warszawik, Andreas Herrmann, Thorben Cordes
Publicado en: Physical Chemistry Chemical Physics, Edición 21/7, 2019, Página(s) 3721-3733, ISSN 1463-9076
Editor: Royal Society of Chemistry
DOI: 10.1039/c8cp05063e

Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

Autores: Björn Hellenkamp, Sonja Schmid, Olga Doroshenko, Oleg Opanasyuk, Ralf Kühnemuth, Soheila Rezaei Adariani, Benjamin Ambrose, Mikayel Aznauryan, Anders Barth, Victoria Birkedal, Mark E. Bowen, Hongtao Chen, Thorben Cordes, Tobias Eilert, Carel Fijen, Christian Gebhardt, Markus Götz, Giorgos Gouridis, Enrico Gratton, Taekjip Ha, Pengyu Hao, Christian A. Hanke, Andreas Hartmann, Jelle Hendrix, Lass
Publicado en: Nature Methods, Edición 15/9, 2018, Página(s) 669-676, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1038/s41592-018-0085-0

Conformational dynamics of the ABC transporter McjD seen by single‐molecule FRET

Autores: Florence Husada, Kiran Bountra, Konstantinos Tassis, Marijn de Boer, Maria Romano, Sylvie Rebuffat, Konstantinos Beis, Thorben Cordes
Publicado en: The EMBO Journal, Edición 37/21, 2018, Página(s) e100056, ISSN 0261-4189
Editor: Nature Publishing Group
DOI: 10.15252/embj.2018100056

Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA

Autores: Nicole C. Robb, Aartjan J. W. te Velthuis, Ralph Wieneke, Robert Tampé, Thorben Cordes, Ervin Fodor, Achillefs N. Kapanidis
Publicado en: Nucleic Acids Research, Edición (2016) 44 (21): 10304-10315, 2016, Página(s) gkw884, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkw884

A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement–Förster-Type Resonance Energy Transfer (PIFE-FRET)

Autores: Eitan Lerner, Evelyn Ploetz, Johannes Hohlbein, Thorben Cordes, Shimon Weiss
Publicado en: The Journal of Physical Chemistry B, Edición 120/26, 2016, Página(s) 6401-6410, ISSN 1520-6106
Editor: American Chemical Society
DOI: 10.1021/acs.jpcb.6b03692

Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multi-scale molecular rulers

Autores: Evelyn Ploetz, Eitan Lerner, Florence Husada, Martin Roelfs, SangYoon Chung, Johannes Hohlbein, Shimon Weiss, Thorben Cordes
Publicado en: Scientific Reports, Edición 6/1, 2016, ISSN 2045-2322
Editor: Nature Publishing Group
DOI: 10.1038/srep33257

A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization

Autores: Jasper H. M. van der Velde, Jens Oelerich, Jingyi Huang, Jochem H. Smit, Atieh Aminian Jazi, Silvia Galiani, Kirill Kolmakov, Giorgos Guoridis, Christian Eggeling, Andreas Herrmann, Gerard Roelfes, Thorben Cordes
Publicado en: Nature Communications, Edición 7, 2016, Página(s) 10144, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/ncomms10144

Caging and Photoactivation in Single-Molecule Förster Resonance Energy Transfer Experiments

Autores: Atieh Aminian Jazi, Evelyn Ploetz, Muhamad Arizki, Balasubramaniam Dhandayuthapani, Izabela Waclawska, Reinhard Krämer, Christine Ziegler, Thorben Cordes
Publicado en: Biochemistry, Edición 56/14, 2017, Página(s) 2031-2041, ISSN 0006-2960
Editor: American Chemical Society
DOI: 10.1021/acs.biochem.6b00916

Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold

Autores: Pauline J Kolbeck, Willem Vanderlinden, Gerd Gemmecker, Christian Gebhardt, Martin Lehmann, Aidin Lak, Thomas Nicolaus, Thorben Cordes, Jan Lipfert
Publicado en: Nucleic Acids Research, Edición 49/9, 2021, Página(s) 5143-5158, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkab265

Single‐molecule studies of conformational states and dynamics in the ABC importer OpuA

Autores: Konstantinos Tassis, Ruslan Vietrov, Matthijs Koning, Marijn Boer, Giorgos Gouridis, Thorben Cordes
Publicado en: FEBS Letters, Edición 595/6, 2021, Página(s) 717-734, ISSN 0014-5793
Editor: Elsevier BV
DOI: 10.1002/1873-3468.14026

An integrated transport mechanism of the maltose ABC importer

Autores: Rebecca Mächtel, Alessandra Narducci, Douglas A. Griffith, Thorben Cordes, Cédric Orelle
Publicado en: Research in Microbiology, Edición 170/8, 2019, Página(s) 321-337, ISSN 0923-2508
Editor: Elsevier BV
DOI: 10.1016/j.resmic.2019.09.004

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