Deliverables Other (8) Training event 2 Successful implementation of training event month 12: Communication and Presentation 1 (UW) PhD theses submission Ensure all PhD theses submitted. Publications for each WP (WP3-WP5) Submission of at least 2 peer review research papers per ESR. Lead partner: WP lead Training events 3 Successful implementation of training events - month 18: - Abiotic Influences on Viticulture (UCPH) - Grape Harvesting and Biological Monitoring during Fermentation (ChrHa) - Science of Wine and Port Production (AESBUC) - Origins of Viticulture (INRA) Training events 1 Successful implementation of training events - month 7: - Kickoff conference: 21st Century Challenges to Viticulture (AU). - 21st Century Approaches to Viticiulture and Understanding Wine Quality (ChrHa) Training events 4 Successful implementation of training events - month 24 - Midterm conference: Meeting Viticulture challenges through Novel Technological Developments (AU) - Communciation and Presentation 2 (UCPH) - Research Management, Career Planning, Grant Writing (UCPH) - Entrepreneurschip (ChrHa) - Genomics - from Microbe to Vine (DTU) Training event 5 Successful implementation of training event - month 30 - Applied Snesory Analysis (DLR-RLP) - Aroma Analytics (UNIZAR) Training event 6 Successful implementation of training events - month 36. - Bio-informatics and modelling (VU) - Symbiosis - Biology and Methodology (INRIA) Documents, reports (1) Training event 7 Successful implementation of training event - month 42: Final Conference MICROWINE 2020 - State of the Art Solutions for Viticulture Publications Peer reviewed articles (23) Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments Author(s): Alex Gobbi; Ifigeneia Kyrkou; Elisa Filippi; Lea Ellegaard-Jensen; Lars Hestbjerg Hansen; Lars Hestbjerg Hansen Published in: Scientific Reports, Issue 10, 2020, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1038/s41598-019-56741-z Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing Author(s): Sarah Siu Tze Mak, Shyam Gopalakrishnan, Christian Carøe, Chunyu Geng, Shanlin Liu, Mikkel-Holger S Sinding, Lukas F K Kuderna, Wenwei Zhang, Shujin Fu, Filipe G Vieira, Mietje Germonpré, Hervé Bocherens, Sergey Fedorov, Bent Petersen, Thomas Sicheritz-Pontén, Tomas Marques-Bonet, Guojie Zhang, Hui Jiang, M Thomas P Gilbert Published in: GigaScience, Issue 6/8, 2017, Page(s) 1-13, ISSN 2047-217X Publisher: Oxford Academic DOI: 10.1093/gigascience/gix049 Pierce's Disease of Grapevines: A Review of Control Strategies and an Outline of an Epidemiological Model Author(s): Ifigeneia Kyrkou, Taneli Pusa, Lea Ellegaard-Jensen, Marie-France Sagot, Lars Hestbjerg Hansen Published in: Frontiers in Microbiology, Issue 9, 2018, ISSN 1664-302X Publisher: Frontiers Media DOI: 10.3389/fmicb.2018.02141 Multi-omics and potential applications in wine production Author(s): Kimmo Sirén, Sarah Siu Tze Mak, Ulrich Fischer, Lars Hestbjerg Hansen, M Thomas P Gilbert Published in: Current Opinion in Biotechnology, Issue 56, 2019, Page(s) 172-178, ISSN 0958-1669 Publisher: Elsevier BV DOI: 10.1016/j.copbio.2018.11.014 Assessing the impact of plant genetic diversity in shaping the microbial community structure of Vitis vinifera phyllosphere in the Mediterranean Author(s): Prashant Singh, Alex Gobbi, Sylvain Santoni, Lars H Hansen, Patrice This, Jean-Pierre Péros Published in: Frontiers in Life Science, Issue 11/1, 2018, Page(s) 35-46, ISSN 2155-3769 Publisher: Taylor and Francis Inc. DOI: 10.1080/21553769.2018.1552628 Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine’s Phyllosphere and Carposphere: An NGS Approach Author(s): Prashant Singh, Sylvain Santoni, Patrice This, Jean-Pierre Péros Published in: Microorganisms, Issue 6/4, 2018, Page(s) 96, ISSN 2076-2607 Publisher: mdpi DOI: 10.3390/microorganisms6040096 Automated supervised learning pipeline for non-targeted GC-MS data analysis Author(s): Kimmo Sirén, Ulrich Fischer, Jochen Vestner Published in: Analytica Chimica Acta: X, Issue 1, 2019, Page(s) 100005, ISSN 2590-1346 Publisher: Elsevier B.V. DOI: 10.1016/j.acax.2019.100005 Distribution of Oenococcus oeni populations in natural habitats Author(s): Lorentzen, Marc Lucas, Patrick Published in: Applied Microbiolology and Biotechnology, Issue 103, 2019, Page(s) 0175-7598/2937-2945, ISSN 1432-0614 Publisher: Springer Berlin Heidelberg DOI: 10.1007/s00253-019-09689-z Metabolic Games Author(s): Taneli Pusa, Martin Wannagat, Marie-France Sagot Published in: Frontiers in Applied Mathematics and Statistics, Issue 5, 2019, ISSN 2297-4687 Publisher: Front. Appl. Math. Stat. DOI: 10.3389/fams.2019.00018 Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must Author(s): Kimmo Sirén, Sarah Siu Tze Mak, Chrats Melkonian, Christian Carøe, Jan Hendrik Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert Published in: Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X Publisher: Frontiers Media DOI: 10.3389/fmicb.2019.00697 Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR Author(s): Alex Gobbi, Rui G. Santini, Elisa Filippi, Lea Ellegaard-Jensen, Carsten S. Jacobsen, Lars H. Hansen Published in: PLOS ONE, Issue 14/4, 2019, Page(s) e0200979, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.1371/journal.pone.0200979 Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains Author(s): Marc P. Lorentzen, Hugo Campbell-Sills, Tue S. Jorgensen, Tue K. Nielsen, Monika Coton, Emmanuel Coton, Lars Hansen, Patrick M. Lucas Published in: BMC Genomics, Issue 20/1, 2019, ISSN 1471-2164 Publisher: BioMed Central DOI: 10.1186/s12864-019-5692-3 Changes in the Composition of the Lactic Acid Bacteria Behavior and the Diversity of Oenococcus oeni Isolated from Red Wines Supplemented with Selected Grape Phenolic Compounds Author(s): Ingrid Collombel, Francisco Campos, Tim Hogg Published in: Fermentation, Issue 5/1, 2019, Page(s) 1, ISSN 2311-5637 Publisher: MDPI DOI: 10.3390/fermentation5010001 Modulating Fermentative, Varietal and Aging Aromas of Wine Using non-Saccharomyces Yeasts in a Sequential Inoculation Approach Author(s): Inès Oliveira; Vicente Ferreira Published in: Microorganisms, Issue 12 per year, 2019, Page(s) 1-23, ISSN 2076-2607 Publisher: MDPI AG DOI: 10.3390/microorganisms7060164 Epicoccum layuense a potential biological control agent of esca-associated fungi in grapevine Author(s): Giovanni Del Frari, Ana Cabral, Teresa Nascimento, Ricardo Boavida Ferreira, Helena Oliveira Published in: PLOS ONE, Issue 14/3, 2019, Page(s) e0213273, ISSN 1932-6203 Publisher: Public Library of Science DOI: 10.1371/journal.pone.0213273 Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture Author(s): Chrats Melkonian, Willi Gottstein, Sonja Blasche, Yongkyu Kim, Martin Abel-Kistrup, Hentie Swiegers, Sofie Saerens, Nathalia Edwards, Kiran R. Patil, Bas Teusink, Douwe Molenaar Published in: Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X Publisher: Frontiers Media DOI: 10.3389/fmicb.2019.01347 Endotherapy of infected grapevine cuttings for the control of Phaeomoniella chlamydospora and Phaeoacremonium minimum Author(s): GioVAnni DEL FRARI, João COSTA, HeLenA OLIVEIRA and RiCARdo BOAVIDA FERREIRA Published in: Phytopathologia Mediterranea, 2018, ISSN 1593-2095 Publisher: Firenze University Press DOI: 10.14601/phytopathol_mediterr-23515 Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms Author(s): Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo Boavida Ferreira Published in: Frontiers in Plant Science, Issue 10, 2019, ISSN 1664-462X Publisher: Frontiers Media S. A. DOI: 10.3389/fpls.2019.00910 Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum—A Novel Lineage of Lactobacillus Phages Comprising Five New Members Author(s): Ifigeneia Kyrkou, Alexander Byth Carstens, Lea Ellegaard-Jensen, Witold Kot, Athanasios Zervas, Amaru Miranda Djurhuus, Horst Neve, Martin Hansen, Lars Hestbjerg Hansen Published in: Viruses, Issue 11/7, 2019, Page(s) 611, ISSN 1999-4915 Publisher: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v11070611 MOOMIN - Mathematical explOration of 'Omics data on a MetabolIc Network Author(s): Pusa, Taneli; Ferrarini, Mariana Galvao; Andrade, Ricardo; Mary, Arnaud; Marchetti-Spaccamela, Alberto; Stougie, Leen; Sagot, Marie-France Published in: Bioinformatics, 2019, ISSN 1367-4803 Publisher: Oxford University Press DOI: 10.1093/bioinformatics/btz584 New Insights Into Cinnamoyl Esterase Activity of Oenococcus oeni. Author(s): Ingrid Collombel; Chrats Melkonian; Douwe Molenaar; Francisco M. Campos; Tim Hogg; Tim Hogg Published in: Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X Publisher: Frontiers Media DOI: 10.3389/fmicb.2019.02597 "Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, \""Silenusvirus\""." Author(s): Ifigeneia Kyrkou; Alexander Byth Carstens; Alexander Byth Carstens; Lea Ellegaard-Jensen; Witold Kot; Witold Kot; Athanasios Zervas; Amaru Miranda Djurhuus; Amaru Miranda Djurhuus; Horst Neve; Charles M. A. P. Franz; Martin Hansen; Lars Hestbjerg Hansen; Lars Hestbjerg Hansen Published in: Scientific Reports, Issue 10, 2020, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1101/728261 Understanding the phyllosphere microbiome assemblage in grape species (<em>Vitaceae</em>) with amplicon sequence data structures Author(s): Singh, Prashant; Santoni, Sylvain; Weber, Audrey; This, Patrice; Peros, Jean-Pierre Published in: Scientific Reports, 2019, ISSN 2045-2322 Publisher: Nature Publishing Group DOI: 10.1038/s41598-019-50839-0 Thesis dissertations (14) Control of Bacteria for Sustainable Viticulture and Vinification Practices Author(s): Ifigeneia Kyrkou Published in: PhD thesis, 2018 Publisher: Aarhus University Microbial Assemblage in Grapevine's Phyllosphere: Who is the driver ? Author(s): Prashant Singh Published in: 2018 Publisher: Montpellier Supagro Vineyard soils evaluation. Combining elemental analysis via X-ray fluorescence core scanner and microbial DNA sequencing to assess soil vertical stratification Author(s): Rui Santini Published in: PhD Thesis, 2018 Publisher: University of Copenhagen Riesling, ferments, microbes −The development and application of NGS tools in the context of winemaking Author(s): Sarah ST Mak Published in: PhD Thesis, 2018 Publisher: University of Copenhagen Multi-omics Methods to unravel Microbial Diversity in Fermentation of Riesling Wines Author(s): Kimmo Sirén Published in: PhD Thesis, 2019 Publisher: Technical University of Kaiserlautern Mathematical modelling of the impacts of environment using metabolic networks and game theory Author(s): Henri Taneli Pusa Published in: PhD Thesis, 2019 Publisher: University of Lyon 1, France, and Sapienza University of Rome, Italy Diversité et caractéristiques génomiques d'Oenococcus oeni Author(s): Marc Lorentzen Published in: PhD Thesis, 2019 Publisher: University of Bordeaux Contribution of wine microorganisms to the aroma composition of wine and its sensory impact Author(s): Ines Pereira Biscaia de Oliveira Published in: PhD Thesis, 2019 Publisher: Universidad de Zaragoza Grape Evolution in the Human Environment Author(s): Hsiao-Lei Liu Published in: PhD Thesis, 2019 Publisher: University of Warwick Analysis of grape wine microbiota from different wine producing regions and thier plant growth promoting properties Author(s): Mónica Oyuela Aguilar Published in: PhD Thesis, 2019 Publisher: UNLP Metagenomics in wine fermentation Author(s): Franziska Klinke Published in: PhD Thesis, 2019 Publisher: Technical University of Denmark (DTU) Exploring the molecular basis of microbial wine-terroir Author(s): Alex Gobbi Published in: PhD thesis, 2019 Publisher: Aarhus University Frontiers in the control of pathogenic fungi associated with the esca disease complex Author(s): Giovanni Del Frari Published in: 2019 Publisher: University of Lisbon Post-alcoholic fermentation micro-ecology of wines: the role of phenolic composition and the effects on quality Author(s): Ingrid Collombel Published in: 2018 Publisher: University of Porto Other (2) Seasonal microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments Author(s): Gobbi Alex, Kyrkou Ifigeneia, Filippi Elisa, Ellegaard-Jensen Lea, Hansen Lars Hestbjerg Published in: Bioxriv, 2018 Publisher: Bioxriv DOI: 10.1101/523977 Analysing complex metagenomic data with MicroWineBar Author(s): Franziska Klincke, Martin Abel-Kistrup, Sofie Maria Gilberte Saerens, Simon Rasmussen Published in: Biorxiv, 2019 Publisher: Biorxiv DOI: 10.1101/742684 Searching for OpenAIRE data... 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