MICROWINE - Microbial metagenomics and the modern wine industry | MICROWINE | Project | Results | H2020 | CORDIS

Livrables

Successful implementation of training event month 12: Communication and Presentation 1 (UW)

Ensure all PhD theses submitted.

Submission of at least 2 peer review research papers per ESR. Lead partner: WP lead

Successful implementation of training events - month 18: - Abiotic Influences on Viticulture (UCPH) - Grape Harvesting and Biological Monitoring during Fermentation (ChrHa) - Science of Wine and Port Production (AESBUC) - Origins of Viticulture (INRA)

Training events 1

Successful implementation of training events - month 7: - Kickoff conference: 21st Century Challenges to Viticulture (AU). - 21st Century Approaches to Viticiulture and Understanding Wine Quality (ChrHa)

Training events 4

Successful implementation of training events - month 24 - Midterm conference: Meeting Viticulture challenges through Novel Technological Developments (AU) - Communciation and Presentation 2 (UCPH) - Research Management, Career Planning, Grant Writing (UCPH) - Entrepreneurschip (ChrHa) - Genomics - from Microbe to Vine (DTU)

Training event 5

Successful implementation of training event - month 30 - Applied Snesory Analysis (DLR-RLP) - Aroma Analytics (UNIZAR)

Training event 6

Successful implementation of training events - month 36. - Bio-informatics and modelling (VU) - Symbiosis - Biology and Methodology (INRIA)

Training event 7

Successful implementation of training event - month 42: Final Conference MICROWINE 2020 - State of the Art Solutions for Viticulture

Publications

Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments

Auteurs: Alex Gobbi; Ifigeneia Kyrkou; Elisa Filippi; Lea Ellegaard-Jensen; Lars Hestbjerg Hansen; Lars Hestbjerg Hansen
Publié dans: Scientific Reports, Numéro 10, 2020, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-019-56741-z

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

Auteurs: Sarah Siu Tze Mak, Shyam Gopalakrishnan, Christian Carøe, Chunyu Geng, Shanlin Liu, Mikkel-Holger S Sinding, Lukas F K Kuderna, Wenwei Zhang, Shujin Fu, Filipe G Vieira, Mietje Germonpré, Hervé Bocherens, Sergey Fedorov, Bent Petersen, Thomas Sicheritz-Pontén, Tomas Marques-Bonet, Guojie Zhang, Hui Jiang, M Thomas P Gilbert
Publié dans: GigaScience, Numéro 6/8, 2017, Page(s) 1-13, ISSN 2047-217X
Éditeur: Oxford Academic
DOI: 10.1093/gigascience/gix049

Pierce's Disease of Grapevines: A Review of Control Strategies and an Outline of an Epidemiological Model

Auteurs: Ifigeneia Kyrkou, Taneli Pusa, Lea Ellegaard-Jensen, Marie-France Sagot, Lars Hestbjerg Hansen
Publié dans: Frontiers in Microbiology, Numéro 9, 2018, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.3389/fmicb.2018.02141

Multi-omics and potential applications in wine production

Auteurs: Kimmo Sirén, Sarah Siu Tze Mak, Ulrich Fischer, Lars Hestbjerg Hansen, M Thomas P Gilbert
Publié dans: Current Opinion in Biotechnology, Numéro 56, 2019, Page(s) 172-178, ISSN 0958-1669
Éditeur: Elsevier BV
DOI: 10.1016/j.copbio.2018.11.014

Assessing the impact of plant genetic diversity in shaping the microbial community structure of Vitis vinifera phyllosphere in the Mediterranean

Auteurs: Prashant Singh, Alex Gobbi, Sylvain Santoni, Lars H Hansen, Patrice This, Jean-Pierre Péros
Publié dans: Frontiers in Life Science, Numéro 11/1, 2018, Page(s) 35-46, ISSN 2155-3769
Éditeur: Taylor and Francis Inc.
DOI: 10.1080/21553769.2018.1552628

Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine’s Phyllosphere and Carposphere: An NGS Approach

Auteurs: Prashant Singh, Sylvain Santoni, Patrice This, Jean-Pierre Péros
Publié dans: Microorganisms, Numéro 6/4, 2018, Page(s) 96, ISSN 2076-2607
Éditeur: mdpi
DOI: 10.3390/microorganisms6040096

Automated supervised learning pipeline for non-targeted GC-MS data analysis

Auteurs: Kimmo Sirén, Ulrich Fischer, Jochen Vestner
Publié dans: Analytica Chimica Acta: X, Numéro 1, 2019, Page(s) 100005, ISSN 2590-1346
Éditeur: Elsevier B.V.
DOI: 10.1016/j.acax.2019.100005

Distribution of Oenococcus oeni populations in natural habitats

Auteurs: Lorentzen, Marc Lucas, Patrick
Publié dans: Applied Microbiolology and Biotechnology, Numéro 103, 2019, Page(s) 0175-7598/2937-2945, ISSN 1432-0614
Éditeur: Springer Berlin Heidelberg
DOI: 10.1007/s00253-019-09689-z

Metabolic Games

Auteurs: Taneli Pusa, Martin Wannagat, Marie-France Sagot
Publié dans: Frontiers in Applied Mathematics and Statistics, Numéro 5, 2019, ISSN 2297-4687
Éditeur: Front. Appl. Math. Stat.
DOI: 10.3389/fams.2019.00018

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must

Auteurs: Kimmo Sirén, Sarah Siu Tze Mak, Chrats Melkonian, Christian Carøe, Jan Hendrik Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert
Publié dans: Frontiers in Microbiology, Numéro 10, 2019, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.3389/fmicb.2019.00697

Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR

Auteurs: Alex Gobbi, Rui G. Santini, Elisa Filippi, Lea Ellegaard-Jensen, Carsten S. Jacobsen, Lars H. Hansen
Publié dans: PLOS ONE, Numéro 14/4, 2019, Page(s) e0200979, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0200979

Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

Auteurs: Marc P. Lorentzen, Hugo Campbell-Sills, Tue S. Jorgensen, Tue K. Nielsen, Monika Coton, Emmanuel Coton, Lars Hansen, Patrick M. Lucas
Publié dans: BMC Genomics, Numéro 20/1, 2019, ISSN 1471-2164
Éditeur: BioMed Central
DOI: 10.1186/s12864-019-5692-3

Changes in the Composition of the Lactic Acid Bacteria Behavior and the Diversity of Oenococcus oeni Isolated from Red Wines Supplemented with Selected Grape Phenolic Compounds

Auteurs: Ingrid Collombel, Francisco Campos, Tim Hogg
Publié dans: Fermentation, Numéro 5/1, 2019, Page(s) 1, ISSN 2311-5637
Éditeur: MDPI
DOI: 10.3390/fermentation5010001

Modulating Fermentative, Varietal and Aging Aromas of Wine Using non-Saccharomyces Yeasts in a Sequential Inoculation Approach

Auteurs: Inès Oliveira; Vicente Ferreira
Publié dans: Microorganisms, Numéro 12 per year, 2019, Page(s) 1-23, ISSN 2076-2607
Éditeur: MDPI AG
DOI: 10.3390/microorganisms7060164

Epicoccum layuense a potential biological control agent of esca-associated fungi in grapevine

Auteurs: Giovanni Del Frari, Ana Cabral, Teresa Nascimento, Ricardo Boavida Ferreira, Helena Oliveira
Publié dans: PLOS ONE, Numéro 14/3, 2019, Page(s) e0213273, ISSN 1932-6203
Éditeur: Public Library of Science
DOI: 10.1371/journal.pone.0213273

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture

Auteurs: Chrats Melkonian, Willi Gottstein, Sonja Blasche, Yongkyu Kim, Martin Abel-Kistrup, Hentie Swiegers, Sofie Saerens, Nathalia Edwards, Kiran R. Patil, Bas Teusink, Douwe Molenaar
Publié dans: Frontiers in Microbiology, Numéro 10, 2019, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.3389/fmicb.2019.01347

Endotherapy of infected grapevine cuttings for the control of Phaeomoniella chlamydospora and Phaeoacremonium minimum

Auteurs: GioVAnni DEL FRARI, João COSTA, HeLenA OLIVEIRA and RiCARdo BOAVIDA FERREIRA
Publié dans: Phytopathologia Mediterranea, 2018, ISSN 1593-2095
Éditeur: Firenze University Press
DOI: 10.14601/phytopathol_mediterr-23515

Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms

Auteurs: Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo Boavida Ferreira
Publié dans: Frontiers in Plant Science, Numéro 10, 2019, ISSN 1664-462X
Éditeur: Frontiers Media S. A.
DOI: 10.3389/fpls.2019.00910

Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum—A Novel Lineage of Lactobacillus Phages Comprising Five New Members

Auteurs: Ifigeneia Kyrkou, Alexander Byth Carstens, Lea Ellegaard-Jensen, Witold Kot, Athanasios Zervas, Amaru Miranda Djurhuus, Horst Neve, Martin Hansen, Lars Hestbjerg Hansen
Publié dans: Viruses, Numéro 11/7, 2019, Page(s) 611, ISSN 1999-4915
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/v11070611

MOOMIN - Mathematical explOration of 'Omics data on a MetabolIc Network

Auteurs: Pusa, Taneli; Ferrarini, Mariana Galvao; Andrade, Ricardo; Mary, Arnaud; Marchetti-Spaccamela, Alberto; Stougie, Leen; Sagot, Marie-France
Publié dans: Bioinformatics, 2019, ISSN 1367-4803
Éditeur: Oxford University Press
DOI: 10.1093/bioinformatics/btz584

New Insights Into Cinnamoyl Esterase Activity of Oenococcus oeni.

Auteurs: Ingrid Collombel; Chrats Melkonian; Douwe Molenaar; Francisco M. Campos; Tim Hogg; Tim Hogg
Publié dans: Frontiers in Microbiology, Numéro 10, 2019, ISSN 1664-302X
Éditeur: Frontiers Media
DOI: 10.3389/fmicb.2019.02597

"Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, \""Silenusvirus\""."

Auteurs: Ifigeneia Kyrkou; Alexander Byth Carstens; Alexander Byth Carstens; Lea Ellegaard-Jensen; Witold Kot; Witold Kot; Athanasios Zervas; Amaru Miranda Djurhuus; Amaru Miranda Djurhuus; Horst Neve; Charles M. A. P. Franz; Martin Hansen; Lars Hestbjerg Hansen; Lars Hestbjerg Hansen
Publié dans: Scientific Reports, Numéro 10, 2020, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1101/728261

Understanding the phyllosphere microbiome assemblage in grape species (<em>Vitaceae</em>) with amplicon sequence data structures

Auteurs: Singh, Prashant; Santoni, Sylvain; Weber, Audrey; This, Patrice; Peros, Jean-Pierre
Publié dans: Scientific Reports, 2019, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-019-50839-0

Control of Bacteria for Sustainable Viticulture and Vinification Practices

Auteurs: Ifigeneia Kyrkou
Publié dans: PhD thesis, 2018
Éditeur: Aarhus University

Microbial Assemblage in Grapevine's Phyllosphere: Who is the driver ?

Auteurs: Prashant Singh
Publié dans: 2018
Éditeur: Montpellier Supagro

Vineyard soils evaluation. Combining elemental analysis via X-ray fluorescence core scanner and microbial DNA sequencing to assess soil vertical stratification

Auteurs: Rui Santini
Publié dans: PhD Thesis, 2018
Éditeur: University of Copenhagen

Riesling, ferments, microbes −The development and application of NGS tools in the context of winemaking

Auteurs: Sarah ST Mak
Publié dans: PhD Thesis, 2018
Éditeur: University of Copenhagen

Multi-omics Methods to unravel Microbial Diversity in Fermentation of Riesling Wines

Auteurs: Kimmo Sirén
Publié dans: PhD Thesis, 2019
Éditeur: Technical University of Kaiserlautern

Mathematical modelling of the impacts of environment using metabolic networks and game theory

Auteurs: Henri Taneli Pusa
Publié dans: PhD Thesis, 2019
Éditeur: University of Lyon 1, France, and Sapienza University of Rome, Italy

Diversité et caractéristiques génomiques d'Oenococcus oeni

Auteurs: Marc Lorentzen
Publié dans: PhD Thesis, 2019
Éditeur: University of Bordeaux

Contribution of wine microorganisms to the aroma composition of wine and its sensory impact

Auteurs: Ines Pereira Biscaia de Oliveira
Publié dans: PhD Thesis, 2019
Éditeur: Universidad de Zaragoza

Grape Evolution in the Human Environment

Auteurs: Hsiao-Lei Liu
Publié dans: PhD Thesis, 2019
Éditeur: University of Warwick

Analysis of grape wine microbiota from different wine producing regions and thier plant growth promoting properties

Auteurs: Mónica Oyuela Aguilar
Publié dans: PhD Thesis, 2019
Éditeur: UNLP

Metagenomics in wine fermentation

Auteurs: Franziska Klinke
Publié dans: PhD Thesis, 2019
Éditeur: Technical University of Denmark (DTU)

Exploring the molecular basis of microbial wine-terroir

Auteurs: Alex Gobbi
Publié dans: PhD thesis, 2019
Éditeur: Aarhus University

Frontiers in the control of pathogenic fungi associated with the esca disease complex

Auteurs: Giovanni Del Frari
Publié dans: 2019
Éditeur: University of Lisbon

Post-alcoholic fermentation micro-ecology of wines: the role of phenolic composition and the effects on quality

Auteurs: Ingrid Collombel
Publié dans: 2018
Éditeur: University of Porto

Seasonal microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments

Auteurs: Gobbi Alex, Kyrkou Ifigeneia, Filippi Elisa, Ellegaard-Jensen Lea, Hansen Lars Hestbjerg
Publié dans: Bioxriv, 2018
Éditeur: Bioxriv
DOI: 10.1101/523977

Analysing complex metagenomic data with MicroWineBar

Auteurs: Franziska Klincke, Martin Abel-Kistrup, Sofie Maria Gilberte Saerens, Simon Rasmussen
Publié dans: Biorxiv, 2019
Éditeur: Biorxiv
DOI: 10.1101/742684

MICROWINE - Microbial metagenomics and the modern wine industry

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