Risultati finali Other (8) Training event 2 Successful implementation of training event month 12: Communication and Presentation 1 (UW) PhD theses submission Ensure all PhD theses submitted. Publications for each WP (WP3-WP5) Submission of at least 2 peer review research papers per ESR. Lead partner: WP lead Training events 3 Successful implementation of training events - month 18: - Abiotic Influences on Viticulture (UCPH) - Grape Harvesting and Biological Monitoring during Fermentation (ChrHa) - Science of Wine and Port Production (AESBUC) - Origins of Viticulture (INRA) Training events 1 Successful implementation of training events - month 7: - Kickoff conference: 21st Century Challenges to Viticulture (AU). - 21st Century Approaches to Viticiulture and Understanding Wine Quality (ChrHa) Training events 4 Successful implementation of training events - month 24 - Midterm conference: Meeting Viticulture challenges through Novel Technological Developments (AU) - Communciation and Presentation 2 (UCPH) - Research Management, Career Planning, Grant Writing (UCPH) - Entrepreneurschip (ChrHa) - Genomics - from Microbe to Vine (DTU) Training event 5 Successful implementation of training event - month 30 - Applied Snesory Analysis (DLR-RLP) - Aroma Analytics (UNIZAR) Training event 6 Successful implementation of training events - month 36. - Bio-informatics and modelling (VU) - Symbiosis - Biology and Methodology (INRIA) Documents, reports (1) Training event 7 Successful implementation of training event - month 42: Final Conference MICROWINE 2020 - State of the Art Solutions for Viticulture Pubblicazioni Peer reviewed articles (23) Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments Autori: Alex Gobbi; Ifigeneia Kyrkou; Elisa Filippi; Lea Ellegaard-Jensen; Lars Hestbjerg Hansen; Lars Hestbjerg Hansen Pubblicato in: Scientific Reports, Numero 10, 2020, ISSN 2045-2322 Editore: Nature Publishing Group DOI: 10.1038/s41598-019-56741-z Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing Autori: Sarah Siu Tze Mak, Shyam Gopalakrishnan, Christian Carøe, Chunyu Geng, Shanlin Liu, Mikkel-Holger S Sinding, Lukas F K Kuderna, Wenwei Zhang, Shujin Fu, Filipe G Vieira, Mietje Germonpré, Hervé Bocherens, Sergey Fedorov, Bent Petersen, Thomas Sicheritz-Pontén, Tomas Marques-Bonet, Guojie Zhang, Hui Jiang, M Thomas P Gilbert Pubblicato in: GigaScience, Numero 6/8, 2017, Pagina/e 1-13, ISSN 2047-217X Editore: Oxford Academic DOI: 10.1093/gigascience/gix049 Pierce's Disease of Grapevines: A Review of Control Strategies and an Outline of an Epidemiological Model Autori: Ifigeneia Kyrkou, Taneli Pusa, Lea Ellegaard-Jensen, Marie-France Sagot, Lars Hestbjerg Hansen Pubblicato in: Frontiers in Microbiology, Numero 9, 2018, ISSN 1664-302X Editore: Frontiers Media DOI: 10.3389/fmicb.2018.02141 Multi-omics and potential applications in wine production Autori: Kimmo Sirén, Sarah Siu Tze Mak, Ulrich Fischer, Lars Hestbjerg Hansen, M Thomas P Gilbert Pubblicato in: Current Opinion in Biotechnology, Numero 56, 2019, Pagina/e 172-178, ISSN 0958-1669 Editore: Elsevier BV DOI: 10.1016/j.copbio.2018.11.014 Assessing the impact of plant genetic diversity in shaping the microbial community structure of Vitis vinifera phyllosphere in the Mediterranean Autori: Prashant Singh, Alex Gobbi, Sylvain Santoni, Lars H Hansen, Patrice This, Jean-Pierre Péros Pubblicato in: Frontiers in Life Science, Numero 11/1, 2018, Pagina/e 35-46, ISSN 2155-3769 Editore: Taylor and Francis Inc. DOI: 10.1080/21553769.2018.1552628 Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine’s Phyllosphere and Carposphere: An NGS Approach Autori: Prashant Singh, Sylvain Santoni, Patrice This, Jean-Pierre Péros Pubblicato in: Microorganisms, Numero 6/4, 2018, Pagina/e 96, ISSN 2076-2607 Editore: mdpi DOI: 10.3390/microorganisms6040096 Automated supervised learning pipeline for non-targeted GC-MS data analysis Autori: Kimmo Sirén, Ulrich Fischer, Jochen Vestner Pubblicato in: Analytica Chimica Acta: X, Numero 1, 2019, Pagina/e 100005, ISSN 2590-1346 Editore: Elsevier B.V. DOI: 10.1016/j.acax.2019.100005 Distribution of Oenococcus oeni populations in natural habitats Autori: Lorentzen, Marc Lucas, Patrick Pubblicato in: Applied Microbiolology and Biotechnology, Numero 103, 2019, Pagina/e 0175-7598/2937-2945, ISSN 1432-0614 Editore: Springer Berlin Heidelberg DOI: 10.1007/s00253-019-09689-z Metabolic Games Autori: Taneli Pusa, Martin Wannagat, Marie-France Sagot Pubblicato in: Frontiers in Applied Mathematics and Statistics, Numero 5, 2019, ISSN 2297-4687 Editore: Front. Appl. Math. Stat. DOI: 10.3389/fams.2019.00018 Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must Autori: Kimmo Sirén, Sarah Siu Tze Mak, Chrats Melkonian, Christian Carøe, Jan Hendrik Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert Pubblicato in: Frontiers in Microbiology, Numero 10, 2019, ISSN 1664-302X Editore: Frontiers Media DOI: 10.3389/fmicb.2019.00697 Quantitative and qualitative evaluation of the impact of the G2 enhancer, bead sizes and lysing tubes on the bacterial community composition during DNA extraction from recalcitrant soil core samples based on community sequencing and qPCR Autori: Alex Gobbi, Rui G. Santini, Elisa Filippi, Lea Ellegaard-Jensen, Carsten S. Jacobsen, Lars H. Hansen Pubblicato in: PLOS ONE, Numero 14/4, 2019, Pagina/e e0200979, ISSN 1932-6203 Editore: Public Library of Science DOI: 10.1371/journal.pone.0200979 Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains Autori: Marc P. Lorentzen, Hugo Campbell-Sills, Tue S. Jorgensen, Tue K. Nielsen, Monika Coton, Emmanuel Coton, Lars Hansen, Patrick M. Lucas Pubblicato in: BMC Genomics, Numero 20/1, 2019, ISSN 1471-2164 Editore: BioMed Central DOI: 10.1186/s12864-019-5692-3 Changes in the Composition of the Lactic Acid Bacteria Behavior and the Diversity of Oenococcus oeni Isolated from Red Wines Supplemented with Selected Grape Phenolic Compounds Autori: Ingrid Collombel, Francisco Campos, Tim Hogg Pubblicato in: Fermentation, Numero 5/1, 2019, Pagina/e 1, ISSN 2311-5637 Editore: MDPI DOI: 10.3390/fermentation5010001 Modulating Fermentative, Varietal and Aging Aromas of Wine Using non-Saccharomyces Yeasts in a Sequential Inoculation Approach Autori: Inès Oliveira; Vicente Ferreira Pubblicato in: Microorganisms, Numero 12 per year, 2019, Pagina/e 1-23, ISSN 2076-2607 Editore: MDPI AG DOI: 10.3390/microorganisms7060164 Epicoccum layuense a potential biological control agent of esca-associated fungi in grapevine Autori: Giovanni Del Frari, Ana Cabral, Teresa Nascimento, Ricardo Boavida Ferreira, Helena Oliveira Pubblicato in: PLOS ONE, Numero 14/3, 2019, Pagina/e e0213273, ISSN 1932-6203 Editore: Public Library of Science DOI: 10.1371/journal.pone.0213273 Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture Autori: Chrats Melkonian, Willi Gottstein, Sonja Blasche, Yongkyu Kim, Martin Abel-Kistrup, Hentie Swiegers, Sofie Saerens, Nathalia Edwards, Kiran R. Patil, Bas Teusink, Douwe Molenaar Pubblicato in: Frontiers in Microbiology, Numero 10, 2019, ISSN 1664-302X Editore: Frontiers Media DOI: 10.3389/fmicb.2019.01347 Endotherapy of infected grapevine cuttings for the control of Phaeomoniella chlamydospora and Phaeoacremonium minimum Autori: GioVAnni DEL FRARI, João COSTA, HeLenA OLIVEIRA and RiCARdo BOAVIDA FERREIRA Pubblicato in: Phytopathologia Mediterranea, 2018, ISSN 1593-2095 Editore: Firenze University Press DOI: 10.14601/phytopathol_mediterr-23515 Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms Autori: Giovanni Del Frari, Alex Gobbi, Marie Rønne Aggerbeck, Helena Oliveira, Lars Hestbjerg Hansen, Ricardo Boavida Ferreira Pubblicato in: Frontiers in Plant Science, Numero 10, 2019, ISSN 1664-462X Editore: Frontiers Media S. A. DOI: 10.3389/fpls.2019.00910 Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum—A Novel Lineage of Lactobacillus Phages Comprising Five New Members Autori: Ifigeneia Kyrkou, Alexander Byth Carstens, Lea Ellegaard-Jensen, Witold Kot, Athanasios Zervas, Amaru Miranda Djurhuus, Horst Neve, Martin Hansen, Lars Hestbjerg Hansen Pubblicato in: Viruses, Numero 11/7, 2019, Pagina/e 611, ISSN 1999-4915 Editore: Multidisciplinary Digital Publishing Institute (MDPI) DOI: 10.3390/v11070611 MOOMIN - Mathematical explOration of 'Omics data on a MetabolIc Network Autori: Pusa, Taneli; Ferrarini, Mariana Galvao; Andrade, Ricardo; Mary, Arnaud; Marchetti-Spaccamela, Alberto; Stougie, Leen; Sagot, Marie-France Pubblicato in: Bioinformatics, 2019, ISSN 1367-4803 Editore: Oxford University Press DOI: 10.1093/bioinformatics/btz584 New Insights Into Cinnamoyl Esterase Activity of Oenococcus oeni. Autori: Ingrid Collombel; Chrats Melkonian; Douwe Molenaar; Francisco M. Campos; Tim Hogg; Tim Hogg Pubblicato in: Frontiers in Microbiology, Numero 10, 2019, ISSN 1664-302X Editore: Frontiers Media DOI: 10.3389/fmicb.2019.02597 "Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, \""Silenusvirus\""." Autori: Ifigeneia Kyrkou; Alexander Byth Carstens; Alexander Byth Carstens; Lea Ellegaard-Jensen; Witold Kot; Witold Kot; Athanasios Zervas; Amaru Miranda Djurhuus; Amaru Miranda Djurhuus; Horst Neve; Charles M. A. P. Franz; Martin Hansen; Lars Hestbjerg Hansen; Lars Hestbjerg Hansen Pubblicato in: Scientific Reports, Numero 10, 2020, ISSN 2045-2322 Editore: Nature Publishing Group DOI: 10.1101/728261 Understanding the phyllosphere microbiome assemblage in grape species (<em>Vitaceae</em>) with amplicon sequence data structures Autori: Singh, Prashant; Santoni, Sylvain; Weber, Audrey; This, Patrice; Peros, Jean-Pierre Pubblicato in: Scientific Reports, 2019, ISSN 2045-2322 Editore: Nature Publishing Group DOI: 10.1038/s41598-019-50839-0 Thesis and dissertations (14) Control of Bacteria for Sustainable Viticulture and Vinification Practices Autori: Ifigeneia Kyrkou Pubblicato in: PhD thesis, 2018 Editore: Aarhus University Microbial Assemblage in Grapevine's Phyllosphere: Who is the driver ? Autori: Prashant Singh Pubblicato in: 2018 Editore: Montpellier Supagro Vineyard soils evaluation. Combining elemental analysis via X-ray fluorescence core scanner and microbial DNA sequencing to assess soil vertical stratification Autori: Rui Santini Pubblicato in: PhD Thesis, 2018 Editore: University of Copenhagen Riesling, ferments, microbes −The development and application of NGS tools in the context of winemaking Autori: Sarah ST Mak Pubblicato in: PhD Thesis, 2018 Editore: University of Copenhagen Multi-omics Methods to unravel Microbial Diversity in Fermentation of Riesling Wines Autori: Kimmo Sirén Pubblicato in: PhD Thesis, 2019 Editore: Technical University of Kaiserlautern Mathematical modelling of the impacts of environment using metabolic networks and game theory Autori: Henri Taneli Pusa Pubblicato in: PhD Thesis, 2019 Editore: University of Lyon 1, France, and Sapienza University of Rome, Italy Diversité et caractéristiques génomiques d'Oenococcus oeni Autori: Marc Lorentzen Pubblicato in: PhD Thesis, 2019 Editore: University of Bordeaux Contribution of wine microorganisms to the aroma composition of wine and its sensory impact Autori: Ines Pereira Biscaia de Oliveira Pubblicato in: PhD Thesis, 2019 Editore: Universidad de Zaragoza Grape Evolution in the Human Environment Autori: Hsiao-Lei Liu Pubblicato in: PhD Thesis, 2019 Editore: University of Warwick Analysis of grape wine microbiota from different wine producing regions and thier plant growth promoting properties Autori: Mónica Oyuela Aguilar Pubblicato in: PhD Thesis, 2019 Editore: UNLP Metagenomics in wine fermentation Autori: Franziska Klinke Pubblicato in: PhD Thesis, 2019 Editore: Technical University of Denmark (DTU) Exploring the molecular basis of microbial wine-terroir Autori: Alex Gobbi Pubblicato in: PhD thesis, 2019 Editore: Aarhus University Frontiers in the control of pathogenic fungi associated with the esca disease complex Autori: Giovanni Del Frari Pubblicato in: 2019 Editore: University of Lisbon Post-alcoholic fermentation micro-ecology of wines: the role of phenolic composition and the effects on quality Autori: Ingrid Collombel Pubblicato in: 2018 Editore: University of Porto Other (2) Seasonal microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments Autori: Gobbi Alex, Kyrkou Ifigeneia, Filippi Elisa, Ellegaard-Jensen Lea, Hansen Lars Hestbjerg Pubblicato in: Bioxriv, 2018 Editore: Bioxriv DOI: 10.1101/523977 Analysing complex metagenomic data with MicroWineBar Autori: Franziska Klincke, Martin Abel-Kistrup, Sofie Maria Gilberte Saerens, Simon Rasmussen Pubblicato in: Biorxiv, 2019 Editore: Biorxiv DOI: 10.1101/742684 È in corso la ricerca di dati su OpenAIRE... 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