SemAntically integrating Genomics with Electronic health records for Cancer CARE

Deliverables

Websites, patent fillings, videos etc. (5)

Papers and technical reports

Peer reviewed publications will be submitted as well as white papers etc. to be posted on the project website

Academic papers and technical reports

Peer reviewed academic papers will be submitted and white papers published to the project website

Technical Reports

Technical reports will be publisedh to the project webiste and that of the individual consortium members. Additionally peer reviewed publications may be submitted.

Academic review papers

Peer reviewed papers will be submitted for publication

Peer-reviewed papers & technical reports

Peer reviewed academic papers will be submitted for publication and non-confidential technical reports published on the project website

Demonstrators, pilots, prototypes (1)

Web and mobile user applications

Pilot system rolled out using web and mobile interfaces

Publications

Conference proceedings (11)

Flexible yet Efficient Management of Electronic Health Records

Author(s): Bernhard G. Humm, Paul Walsh
Published in: 2015 International Conference on Computational Science and Computational Intelligence (CSCI), 2015, Page(s) 771-775, ISBN 978-1-4673-9795-7
Publisher: IEEE
DOI: 10.1109/CSCI.2015.84

Semantic AutoSuggest for Electronic Health Records

Author(s): Ulrich Beez, Bernhard G. Humm, Paul Walsh
Published in: 2015 International Conference on Computational Science and Computational Intelligence (CSCI), 2015, Page(s) 760-765, ISBN 978-1-4673-9795-7
Publisher: IEEE
DOI: 10.1109/CSCI.2015.85

Rapidly Visualizing NGS Cancer Data Sets with Cloud Computing

Author(s): Paul Walsh, Brendan Lawlor, Brian Kelly, Timmy Manning, Timm Heuss and Markus Leopold
Published in: AVI 2016 INTERNATIONAL WORKING CONFERENCE ON ADVANCED VISUAL INTERFACES, 2016
Publisher: FTK

The Weekend Warrior: How to build a genomic supercomputer in your spare time using Streams and Actors in Scala

Author(s): Brendan Lawlor and Paul Walsh
Published in: ScalCom 2016 : The 16th IEEE International Conference on Scalable Computing and Communications, 2016
Publisher: IEEE

A Dynamic Product Line for an Electronic Health Record Management System for Cancer Care

Author(s): Matthias Coym, Bernhard G. Humm, Patrick Spitzer, Paul Walsh
Published in: Udo Bleimann, Bernhard Humm, Robert Loew, Stefanie Regier, Ingo Stengel, Paul Walsh (Eds): Proceedings of the Collaborative European Research Conference (CERC 2017), 2017, Page(s) 134-141, ISSN 2220-4164
Publisher: CERC 2019

Evidence-Based Medical Recommendations for Personalized Medicine

Author(s): Bernhard G. Humm, Fabian Lamba, Tino Landmann, Marc Steffens, Paul Walsh
Published in: Udo Bleimann, Bernhard Humm, Robert Loew, Stefanie Regier, Ingo Stengel, Paul Walsh (Eds): Proceedings of the Collaborative European Research Conference (CERC 2017), 2017, Page(s) 147-155, ISSN 2220-4164
Publisher: CERC 2017

A Clinical Decision Support System for Personalized Medicine

Author(s): Johannes Idelhauser, Ulrich Beez, Bernhard G. Humm, Paul Walsh
Published in: Proceedings of the 2016 European Collaborative Research Conference (CERC 2016), 2016, Page(s) 132 - 145, ISSN 2220-4164
Publisher: Cork Institute of Technology

Demonstrating Machine Learning for Cancer Diagnostics

Author(s): Paul Walsh, Jennifer Lynch, Cintia Palu NSilico Life Science, Dublin, Ireland Onofrio Gigliotta, Raffaele Di Fuccio University of Naples, Italy
Published in: Proceedings of Collaborative European Research Conference (CERC 2019), 2019, 2019, ISSN 2220-4164
Publisher: CERC

Machine Learning Approaches to Melanoma Management in a Clinical Setting

Author(s): Paul Walsh, Jennifer Lynch, Timothy Manning
Published in: Proceedings of Collaborative European Research Conference (CERC 2019), 2019, 2019, ISSN 2220-4164
Publisher: CERC

Utilizing High Performance Computing Techniques for efficiently anonymizing sensitive patient data

Author(s): Ntalaperas, A. Bouras: A
Published in: Proceedings of the Collaborative European Research Conference (CERC 2017), 2017
Publisher: Karlsruhe University of Applied Sciences

An approach for anonymization of sensitive clinical and genetic data based on Data Cube Structures

Author(s): Dimitrios Ntalaperas
Published in: Proceedings of the Collaborative European Research Conference, 2016
Publisher: Cork Institute of Technology, Ireland

Thesis dissertations (1)

Gene Expression Profiling of Melanoma

Author(s): David Cormnican, Supervisor: Paul Walsh
Published in: MSc Thesis, 2015
Publisher: UCC

Book chapters (2)

Personalised Clinical Decision Support for Cancer Care

Author(s): Bernhard G. Humm, Paul Walsh
Published in: Thomas Hoppe, Bernhard G. Humm, Anatol Reibold (Eds): Semantic Applications - Methodology, Technology, Corporate, 2018, Page(s) 125-143, ISBN 978-3-662-55432-6
Publisher: Springer Verlag

Personalised Clinical Decision Support for Cancer Care

Author(s): Bernhard G. Humm, Paul Walsh
Published in: Semantic Applications - Methodology, Technology, Corporate Use, 2018, Page(s) 125-143, ISBN 978-3-662-55432-6
Publisher: Springer Verlag

Peer reviewed articles (1)

Simplicity DiffExpress: a bespoke cloud-based interface for RNA-seq differential expression modeling and analysis

Author(s): Cintia Cristina Palu , Marcelo Ribeiro-Alves, Yanxin Wu, Brendan Lawlor, Pavel V Baranov, Brian Kelly and Paul Walsh
Published in: Front. Genet. - Bioinformatics and Computational Biology, 2019, ISSN 0000-0000
Publisher: Front. Genet. - Bioinformatics and Computational Biology