SemAntically integrating Genomics with Electronic health records for Cancer CARE

Informations projet

SAGE-CARE

N° de convention de subvention: 644186

DOI 10.3030/644186

Projet clôturé

Date de signature de la CE 20 Novembre 2014

Date de début 1 Decembre 2014

Date de fin 30 Novembre 2018

Financé au titre de

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Coût total € 450 000,00

Contribution de l’UE € 450 000,00

Coordonné par

HOCHSCHULE DARMSTADT (UNIVERSITY OF APPLIED SCIENCES H-DA)
Germany

Livrables

Websites, patent fillings, videos etc. (5)

Papers and technical reports

Peer reviewed publications will be submitted as well as white papers etc. to be posted on the project website

Academic papers and technical reports

Peer reviewed academic papers will be submitted and white papers published to the project website

Technical Reports

Technical reports will be publisedh to the project webiste and that of the individual consortium members. Additionally peer reviewed publications may be submitted.

Academic review papers

Peer reviewed papers will be submitted for publication

Peer-reviewed papers & technical reports

Peer reviewed academic papers will be submitted for publication and non-confidential technical reports published on the project website

Demonstrators, pilots, prototypes (1)

Web and mobile user applications

Pilot system rolled out using web and mobile interfaces

Publications

Conference proceedings (11)

Flexible yet Efficient Management of Electronic Health Records

Auteurs: Bernhard G. Humm, Paul Walsh
Publié dans: 2015 International Conference on Computational Science and Computational Intelligence (CSCI), 2015, Page(s) 771-775, ISBN 978-1-4673-9795-7
Éditeur: IEEE
DOI: 10.1109/CSCI.2015.84

Semantic AutoSuggest for Electronic Health Records

Auteurs: Ulrich Beez, Bernhard G. Humm, Paul Walsh
Publié dans: 2015 International Conference on Computational Science and Computational Intelligence (CSCI), 2015, Page(s) 760-765, ISBN 978-1-4673-9795-7
Éditeur: IEEE
DOI: 10.1109/CSCI.2015.85

Rapidly Visualizing NGS Cancer Data Sets with Cloud Computing

Auteurs: Paul Walsh, Brendan Lawlor, Brian Kelly, Timmy Manning, Timm Heuss and Markus Leopold
Publié dans: AVI 2016 INTERNATIONAL WORKING CONFERENCE ON ADVANCED VISUAL INTERFACES, 2016
Éditeur: FTK

The Weekend Warrior: How to build a genomic supercomputer in your spare time using Streams and Actors in Scala

Auteurs: Brendan Lawlor and Paul Walsh
Publié dans: ScalCom 2016 : The 16th IEEE International Conference on Scalable Computing and Communications, 2016
Éditeur: IEEE

A Dynamic Product Line for an Electronic Health Record Management System for Cancer Care

Auteurs: Matthias Coym, Bernhard G. Humm, Patrick Spitzer, Paul Walsh
Publié dans: Udo Bleimann, Bernhard Humm, Robert Loew, Stefanie Regier, Ingo Stengel, Paul Walsh (Eds): Proceedings of the Collaborative European Research Conference (CERC 2017), 2017, Page(s) 134-141, ISSN 2220-4164
Éditeur: CERC 2019

Evidence-Based Medical Recommendations for Personalized Medicine

Auteurs: Bernhard G. Humm, Fabian Lamba, Tino Landmann, Marc Steffens, Paul Walsh
Publié dans: Udo Bleimann, Bernhard Humm, Robert Loew, Stefanie Regier, Ingo Stengel, Paul Walsh (Eds): Proceedings of the Collaborative European Research Conference (CERC 2017), 2017, Page(s) 147-155, ISSN 2220-4164
Éditeur: CERC 2017

A Clinical Decision Support System for Personalized Medicine

Auteurs: Johannes Idelhauser, Ulrich Beez, Bernhard G. Humm, Paul Walsh
Publié dans: Proceedings of the 2016 European Collaborative Research Conference (CERC 2016), 2016, Page(s) 132 - 145, ISSN 2220-4164
Éditeur: Cork Institute of Technology

Demonstrating Machine Learning for Cancer Diagnostics

Auteurs: Paul Walsh, Jennifer Lynch, Cintia Palu NSilico Life Science, Dublin, Ireland Onofrio Gigliotta, Raffaele Di Fuccio University of Naples, Italy
Publié dans: Proceedings of Collaborative European Research Conference (CERC 2019), Numéro 2019, 2019, ISSN 2220-4164
Éditeur: CERC

Machine Learning Approaches to Melanoma Management in a Clinical Setting

Auteurs: Paul Walsh, Jennifer Lynch, Timothy Manning
Publié dans: Proceedings of Collaborative European Research Conference (CERC 2019), Numéro 2019, 2019, ISSN 2220-4164
Éditeur: CERC

Utilizing High Performance Computing Techniques for efficiently anonymizing sensitive patient data

Auteurs: Ntalaperas, A. Bouras: A
Publié dans: Proceedings of the Collaborative European Research Conference (CERC 2017), 2017
Éditeur: Karlsruhe University of Applied Sciences

An approach for anonymization of sensitive clinical and genetic data based on Data Cube Structures

Auteurs: Dimitrios Ntalaperas
Publié dans: Proceedings of the Collaborative European Research Conference, 2016
Éditeur: Cork Institute of Technology, Ireland

Thesis and dissertations (1)

Gene Expression Profiling of Melanoma

Auteurs: David Cormnican, Supervisor: Paul Walsh
Publié dans: MSc Thesis, 2015
Éditeur: UCC

Book chapters (2)

Personalised Clinical Decision Support for Cancer Care

Auteurs: Bernhard G. Humm, Paul Walsh
Publié dans: Thomas Hoppe, Bernhard G. Humm, Anatol Reibold (Eds): Semantic Applications - Methodology, Technology, Corporate, 2018, Page(s) 125-143, ISBN 978-3-662-55432-6
Éditeur: Springer Verlag

Personalised Clinical Decision Support for Cancer Care

Auteurs: Bernhard G. Humm, Paul Walsh
Publié dans: Semantic Applications - Methodology, Technology, Corporate Use, 2018, Page(s) 125-143, ISBN 978-3-662-55432-6
Éditeur: Springer Verlag

Peer reviewed articles (1)

Simplicity DiffExpress: a bespoke cloud-based interface for RNA-seq differential expression modeling and analysis

Auteurs: Cintia Cristina Palu , Marcelo Ribeiro-Alves, Yanxin Wu, Brendan Lawlor, Pavel V Baranov, Brian Kelly and Paul Walsh
Publié dans: Front. Genet. - Bioinformatics and Computational Biology, 2019, ISSN 0000-0000
Éditeur: Front. Genet. - Bioinformatics and Computational Biology