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Understanding and Designing Novel NanoPores

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Publications

Large-Conductance Transmembrane Porin Made from DNA Origami

Author(s): Kerstin Göpfrich, Chen-Yu Li, Maria Ricci, Satya Prathyusha Bhamidimarri, Jejoong Yoo, Bertalan Gyenes, Alexander Ohmann, Mathias Winterhalter, Aleksei Aksimentiev, Ulrich F. Keyser
Published in: ACS Nano, 2016, ISSN 1936-0851
DOI: 10.1021/acsnano.6b03759

Digitally encoded DNA nanostructures for multiplexed, single-molecule protein sensing with nanopores

Author(s): Nicholas A. W. Bell, Ulrich F. Keyser
Published in: Nature Nanotechnology, Issue 11/7, 2016, Page(s) 645-651, ISSN 1748-3387
DOI: 10.1038/nnano.2016.50

Ion Channels Made from a Single Membrane-Spanning DNA Duplex

Author(s): Kerstin Göpfrich, Chen-Yu Li, Iwona Mames, Satya Prathyusha Bhamidimarri, Maria Ricci, Jejoong Yoo, Adam Mames, Alexander Ohmann, Mathias Winterhalter, Eugen Stulz, Aleksei Aksimentiev, Ulrich F. Keyser
Published in: Nano Letters, Issue 16/7, 2016, Page(s) 4665-4669, ISSN 1530-6984
DOI: 10.1021/acs.nanolett.6b02039

Extrinsic Cation Selectivity of 2D Membranes

Author(s): Walker, MI; Ubych, K; Saraswat, V; Chalklen, EA; Braeuninger-Weimer, P; Caneva, S; Weatherup, RS; Hofmann, S; Keyser, UF
Published in: ACS Nano, Issue 3, 2017, ISSN 1936-0851
DOI: 10.17863/CAM.9055

Asymmetric dynamics of DNA entering and exiting a strongly confining nanopore

Author(s): Nicholas A. W. Bell, Kaikai Chen, Sandip Ghosal, Maria Ricci, Ulrich F. Keyser
Published in: Nature Communications, Issue 8/1, 2017, ISSN 2041-1723
DOI: 10.1038/s41467-017-00423-9

Correction to Ion Channels Made from a Single Membrane-Spanning DNA Duplex

Author(s): Kerstin Göpfrich, Chen-Yu Li, Iwona Mames, Satya Prathyusha Bhamidimarri, Maria Ricci, Jejoong Yoo, Adam Mames, Alexander Ohmann, Mathias Winterhalter, Eugen Stulz, Aleksei Aksimentiev, Ulrich F. Keyser
Published in: Nano Letters, Issue 17/7, 2017, Page(s) 4548-4548, ISSN 1530-6984
DOI: 10.1021/acs.nanolett.7b02430

Ionic Current-Based Mapping of Short Sequence Motifs in Single DNA Molecules Using Solid-State Nanopores

Author(s): Kaikai Chen, Matyas Juhasz, Felix Gularek, Elmar Weinhold, Yu Tian, Ulrich F. Keyser, Nicholas A. W. Bell
Published in: Nano Letters, Issue 17/9, 2017, Page(s) 5199-5205, ISSN 1530-6984
DOI: 10.1021/acs.nanolett.7b01009

Optical Voltage Sensing Using DNA Origami.

Author(s): Hemmig, Elisa A; Fitzgerald, Clare; Maffeo, Christopher; Hecker, Lisa; Ochmann, Sarah E; Aksimentiev, Aleksei; Tinnefeld, Philip; Keyser, Ulrich Felix
Published in: Nano Letters, Issue 3, 2018, ISSN 1936-0851
DOI: 10.17863/CAM.22565

QuipuNet: Convolutional Neural Network for Single-Molecule Nanopore Sensing

Author(s): Karolis Misiunas, Niklas Ermann, Ulrich F. Keyser
Published in: Nano Letters, Issue 18/6, 2018, Page(s) 4040-4045, ISSN 1530-6984
DOI: 10.1021/acs.nanolett.8b01709

Tunable Anion-Selective Transport through Monolayer Graphene and Hexagonal Boron Nitride

Author(s): Mustafa Caglar, Inese Silkina, Bertram T. Brown, Alice L. Thorneywork, Oliver J. Burton, Vitaliy Babenko, Stephen Matthew Gilbert, Alex Zettl, Stephan Hofmann, Ulrich F. Keyser
Published in: ACS Nano, 2020, ISSN 1936-0851
DOI: 10.1021/acsnano.9b08168

An Integrated Microfluidic Platform for Quantifying Drug Permeation across Biomimetic Vesicle Membranes

Author(s): Michael Schaich, Jehangir Cama, Kareem Al Nahas, Diana Sobota, Hannah Sleath, Kevin Jahnke, Siddharth Deshpande, Cees Dekker, Ulrich F. Keyser
Published in: Molecular Pharmaceutics, Issue 16/6, 2019, Page(s) 2494-2501, ISSN 1543-8384
DOI: 10.1021/acs.molpharmaceut.9b00086

A microfluidic platform for the characterisation of membrane active antimicrobials

Author(s): K. Al Nahas, J. Cama, M. Schaich, K. Hammond, S. Deshpande, C. Dekker, M. G. Ryadnov, U. F. Keyser
Published in: Lab on a Chip, Issue 19/5, 2019, Page(s) 837-844, ISSN 1473-0197
DOI: 10.1039/c8lc00932e

Current Enhancement in Solid-State Nanopores Depends on Three-Dimensional DNA Structure

Author(s): Vivian Wang, Niklas Ermann, Ulrich F. Keyser
Published in: Nano Letters, Issue 19/8, 2019, Page(s) 5661-5666, ISSN 1530-6984
DOI: 10.1021/acs.nanolett.9b02219

Monitoring G-Quadruplex Formation with DNA Carriers and Solid-State Nanopores

Author(s): Filip Bošković, Jinbo Zhu, Kaikai Chen, Ulrich F. Keyser
Published in: Nano Letters, Issue 19/11, 2019, Page(s) 7996-8001, ISSN 1530-6984
DOI: 10.1021/acs.nanolett.9b03184

Multiplexed DNA Identification Using Site Specific dCas9 Barcodes and Nanopore Sensing

Author(s): Nicole E. Weckman, Niklas Ermann, Richard Gutierrez, Kaikai Chen, James Graham, Ran Tivony, Andrew Heron, Ulrich F. Keyser
Published in: ACS Sensors, Issue 4/8, 2019, Page(s) 2065-2072, ISSN 2379-3694
DOI: 10.1021/acssensors.9b00686

Cation dependent electroosmotic flow in glass nanopores

Author(s): Jeffrey Mc Hugh, Kurt Andresen, Ulrich F. Keyser
Published in: Applied Physics Letters, Issue 115/11, 2019, Page(s) 113702, ISSN 0003-6951
DOI: 10.1063/1.5116760

Nonlinear Electrophoresis of Highly Charged Nonpolarizable Particles

Author(s): Soichiro Tottori, Karolis Misiunas, Ulrich F. Keyser, Douwe Jan Bonthuis
Published in: Physical Review Letters, Issue 123/1, 2019, ISSN 0031-9007
DOI: 10.1103/PhysRevLett.123.014502

A synthetic enzyme built from DNA flips 107 lipids per second in biological membranes

Author(s): Alexander Ohmann, Chen-Yu Li, Christopher Maffeo, Kareem Al Nahas, Kevin N. Baumann, Kerstin Göpfrich, Jejoong Yoo, Ulrich F. Keyser, Aleksei Aksimentiev
Published in: Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
DOI: 10.1038/s41467-018-04821-5

Density-Dependent Speed-up of Particle Transport in Channels

Author(s): Karolis Misiunas, Ulrich F. Keyser
Published in: Physical Review Letters, Issue 122/21, 2019, ISSN 0031-9007
DOI: 10.1103/PhysRevLett.122.214501

Promoting single-file DNA translocations through nanopores using electro-osmotic flow

Author(s): Niklas Ermann, Nikita Hanikel, Vivian Wang, Kaikai Chen, Nicole E. Weckman, Ulrich F. Keyser
Published in: The Journal of Chemical Physics, Issue 149/16, 2018, Page(s) 163311, ISSN 0021-9606
DOI: 10.1063/1.5031010

Specific Biosensing Using DNA Aptamers and Nanopores


Published in: ISSN 1616-301X
DOI: 10.1002/adfm.201807555

Experimental evidence of symmetry breaking of transition-path times

Author(s): J. Gladrow, M. Ribezzi-Crivellari, F. Ritort, U. F. Keyser
Published in: Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
DOI: 10.1038/s41467-018-07873-9

Digital Data Storage Using DNA Nanostructures and Solid-State Nanopores

Author(s): Kaikai Chen, Jinglin Kong, Jinbo Zhu, Niklas Ermann, Paul Predki, Ulrich F. Keyser
Published in: Nano Letters, Issue 19/2, 2019, Page(s) 1210-1215, ISSN 1530-6984
DOI: 10.1021/acs.nanolett.8b04715

Controlling aggregation of cholesterol-modified DNA nanostructures

Author(s): Alexander Ohmann, Kerstin Göpfrich, Himanshu Joshi, Rebecca F Thompson, Diana Sobota, Neil A Ranson, Aleksei Aksimentiev, Ulrich F Keyser
Published in: Nucleic Acids Research, Issue 47/21, 2019, Page(s) 11441-11451, ISSN 0305-1048
DOI: 10.1093/nar/gkz914