Understanding and Designing Novel NanoPores

Publikacje

Digital Sensing and Molecular Computation by an Enzyme-Free DNA Circuit

Autorzy: William E. Arter; Yuriy Yusim; Quentin Peter; Chris Taylor; David Klenerman; Ulrich F. Keyser; Tuomas P. J. Knowles
Opublikowane w: ACS Nano, Numer 3, 2020, ISSN 1936-0851
Wydawca: American Chemical Society
DOI: 10.17863/cam.56064

Optimizing Brownian escape rates by potential shaping

Autorzy: Marie Chupeau, Jannes Gladrow, Alexei Chepelianskii, Ulrich F. Keyser, Emmanuel Trizac
Opublikowane w: Proceedings of the National Academy of Sciences, Numer 117/3, 2020, Strona(/y) 1383-1388, ISSN 0027-8424
Wydawca: National Academy of Sciences
DOI: 10.1073/pnas.1910677116

Electrical DNA Sequence Mapping Using Oligodeoxynucleotide Labels and Nanopores

Autorzy: Kaikai Chen, Felix Gularek, Boyao Liu, Elmar Weinhold, Ulrich F. Keyser
Opublikowane w: ACS Nano, Numer 15/2, 2021, Strona(/y) 2679-2685, ISSN 1936-0851
Wydawca: American Chemical Society
DOI: 10.1021/acsnano.0c07947

Experimental Measurement of Relative Path Probabilities and Stochastic Actions

Autorzy: Jannes Gladrow, Ulrich F. Keyser, R. Adhikari, Julian Kappler
Opublikowane w: Physical Review X, Numer 11/3, 2021, ISSN 2160-3308
Wydawca: American Physical Society
DOI: 10.1103/physrevx.11.031022

Nanopore-Based DNA Hard Drives for Rewritable and Secure Data Storage

Autorzy: Kaikai Chen, Jinbo Zhu, Filip Bošković, Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 20/5, 2020, Strona(/y) 3754-3760, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.0c00755

Single-cell microfluidics facilitates the rapid quantification of antibiotic accumulation in Gram-negative bacteria

Autorzy: Jehangir Cama, Margaritis Voliotis, Jeremy Metz, Ashley Smith, Jari Iannucci, Ulrich F. Keyser, Krasimira Tsaneva-Atanasova, Stefano Pagliara
Opublikowane w: Lab on a Chip, Numer 20/15, 2020, Strona(/y) 2765-2775, ISSN 1473-0197
Wydawca: Royal Society of Chemistry
DOI: 10.1039/d0lc00242a

Particle transport across a channel via an oscillating potential

Autorzy: Yizhou Tan, Jannes Gladrow, Ulrich F. Keyser, Leonardo Dagdug, Stefano Pagliara
Opublikowane w: Physical Review E, Numer 96/5, 2017, ISSN 2470-0045
Wydawca: American Physical Society
DOI: 10.1103/physreve.96.052401

Characterization of lipid composition and diffusivity in OLA generated vesicles

Autorzy: Michael Schaich, Diana Sobota, Hannah Sleath, Jehangir Cama, Ulrich F. Keyser
Opublikowane w: Biochimica et Biophysica Acta (BBA) - Biomembranes, Numer 1862/9, 2020, Strona(/y) 183359, ISSN 0005-2736
Wydawca: Elsevier BV
DOI: 10.1016/j.bbamem.2020.183359

Direct detection of molecular intermediates from first-passage times

Autorzy: Alice L. Thorneywork, Jannes Gladrow, Yujia Qing, Marc Rico-Pasto, Felix Ritort, Hagan Bayley, Anatoly B. Kolomeisky, Ulrich F. Keyser
Opublikowane w: Science Advances, Numer 6/18, 2020, Strona(/y) eaaz4642, ISSN 2375-2548
Wydawca: American Association for the Advancement of Science
DOI: 10.1126/sciadv.aaz4642

Switching Cytolytic Nanopores into Antimicrobial Fractal Ruptures by a Single Side Chain Mutation

Autorzy: Katharine Hammond, Flaviu Cipcigan, Kareem Al Nahas, Valeria Losasso, Helen Lewis, Jehangir Cama, Fausto Martelli, Patrick W. Simcock, Marcus Fletcher, Jascindra Ravi, Phillip J. Stansfeld, Stefano Pagliara, Bart W. Hoogenboom, Ulrich F. Keyser, Mark S. P. Sansom, Jason Crain, Maxim G. Ryadnov
Opublikowane w: ACS Nano, Numer 15/6, 2021, Strona(/y) 9679-9689, ISSN 1936-0851
Wydawca: American Chemical Society
DOI: 10.1021/acsnano.1c00218

Kinetics of Toehold-Mediated DNA Strand Displacement Depend on FeII4L4 Tetrahedron Concentration.

Autorzy: Jinbo Zhu; Filip Bošković; Bao-Nguyen T. Nguyen; Jonathan R. Nitschke; Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 4, 2021, ISSN 1530-6992
Wydawca: American Chemical Society
DOI: 10.17863/cam.63011

Cations Regulate Membrane Attachment and Functionality of DNA Nanostructures.

Autorzy: Morzy, Diana; Rubio-Sánchez, Roger; Joshi, Himanshu; Aksimentiev, Aleksei; Di Michele, Lorenzo; Keyser, Ulrich F
Opublikowane w: Journal of the American Chemical Society, Numer 3, 2021, ISSN 0002-7863
Wydawca: American Chemical Society
DOI: 10.17863/cam.68738

Large-Conductance Transmembrane Porin Made from DNA Origami

Autorzy: Kerstin Göpfrich, Chen-Yu Li, Maria Ricci, Satya Prathyusha Bhamidimarri, Jejoong Yoo, Bertalan Gyenes, Alexander Ohmann, Mathias Winterhalter, Aleksei Aksimentiev, Ulrich F. Keyser
Opublikowane w: ACS Nano, 2016, ISSN 1936-0851
Wydawca: American Chemical Society
DOI: 10.1021/acsnano.6b03759

Digitally encoded DNA nanostructures for multiplexed, single-molecule protein sensing with nanopores

Autorzy: Nicholas A. W. Bell, Ulrich F. Keyser
Opublikowane w: Nature Nanotechnology, Numer 11/7, 2016, Strona(/y) 645-651, ISSN 1748-3387
Wydawca: Nature Publishing Group
DOI: 10.1038/nnano.2016.50

Ion Channels Made from a Single Membrane-Spanning DNA Duplex

Autorzy: Kerstin Göpfrich, Chen-Yu Li, Iwona Mames, Satya Prathyusha Bhamidimarri, Maria Ricci, Jejoong Yoo, Adam Mames, Alexander Ohmann, Mathias Winterhalter, Eugen Stulz, Aleksei Aksimentiev, Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 16/7, 2016, Strona(/y) 4665-4669, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.6b02039

Extrinsic Cation Selectivity of 2D Membranes

Autorzy: Walker, MI; Ubych, K; Saraswat, V; Chalklen, EA; Braeuninger-Weimer, P; Caneva, S; Weatherup, RS; Hofmann, S; Keyser, UF
Opublikowane w: ACS Nano, Numer 3, 2017, ISSN 1936-0851
Wydawca: American Chemical Society
DOI: 10.17863/CAM.9055

Asymmetric dynamics of DNA entering and exiting a strongly confining nanopore

Autorzy: Nicholas A. W. Bell, Kaikai Chen, Sandip Ghosal, Maria Ricci, Ulrich F. Keyser
Opublikowane w: Nature Communications, Numer 8/1, 2017, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-017-00423-9

Correction to Ion Channels Made from a Single Membrane-Spanning DNA Duplex

Autorzy: Kerstin Göpfrich, Chen-Yu Li, Iwona Mames, Satya Prathyusha Bhamidimarri, Maria Ricci, Jejoong Yoo, Adam Mames, Alexander Ohmann, Mathias Winterhalter, Eugen Stulz, Aleksei Aksimentiev, Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 17/7, 2017, Strona(/y) 4548-4548, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.7b02430

Ionic Current-Based Mapping of Short Sequence Motifs in Single DNA Molecules Using Solid-State Nanopores

Autorzy: Kaikai Chen, Matyas Juhasz, Felix Gularek, Elmar Weinhold, Yu Tian, Ulrich F. Keyser, Nicholas A. W. Bell
Opublikowane w: Nano Letters, Numer 17/9, 2017, Strona(/y) 5199-5205, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.7b01009

Optical Voltage Sensing Using DNA Origami.

Autorzy: Hemmig, Elisa A; Fitzgerald, Clare; Maffeo, Christopher; Hecker, Lisa; Ochmann, Sarah E; Aksimentiev, Aleksei; Tinnefeld, Philip; Keyser, Ulrich Felix
Opublikowane w: Nano Letters, Numer 3, 2018, ISSN 1936-0851
Wydawca: American Chemical Society
DOI: 10.17863/CAM.22565

QuipuNet: Convolutional Neural Network for Single-Molecule Nanopore Sensing

Autorzy: Karolis Misiunas, Niklas Ermann, Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 18/6, 2018, Strona(/y) 4040-4045, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.8b01709

Tunable Anion-Selective Transport through Monolayer Graphene and Hexagonal Boron Nitride

Autorzy: Mustafa Caglar, Inese Silkina, Bertram T. Brown, Alice L. Thorneywork, Oliver J. Burton, Vitaliy Babenko, Stephen Matthew Gilbert, Alex Zettl, Stephan Hofmann, Ulrich F. Keyser
Opublikowane w: ACS Nano, 2020, ISSN 1936-0851
Wydawca: American Chemical Society
DOI: 10.1021/acsnano.9b08168

An Integrated Microfluidic Platform for Quantifying Drug Permeation across Biomimetic Vesicle Membranes

Autorzy: Michael Schaich, Jehangir Cama, Kareem Al Nahas, Diana Sobota, Hannah Sleath, Kevin Jahnke, Siddharth Deshpande, Cees Dekker, Ulrich F. Keyser
Opublikowane w: Molecular Pharmaceutics, Numer 16/6, 2019, Strona(/y) 2494-2501, ISSN 1543-8384
Wydawca: American Chemical Society
DOI: 10.1021/acs.molpharmaceut.9b00086

A microfluidic platform for the characterisation of membrane active antimicrobials

Autorzy: K. Al Nahas, J. Cama, M. Schaich, K. Hammond, S. Deshpande, C. Dekker, M. G. Ryadnov, U. F. Keyser
Opublikowane w: Lab on a Chip, Numer 19/5, 2019, Strona(/y) 837-844, ISSN 1473-0197
Wydawca: Royal Society of Chemistry
DOI: 10.1039/c8lc00932e

Current Enhancement in Solid-State Nanopores Depends on Three-Dimensional DNA Structure

Autorzy: Vivian Wang, Niklas Ermann, Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 19/8, 2019, Strona(/y) 5661-5666, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.9b02219

Monitoring G-Quadruplex Formation with DNA Carriers and Solid-State Nanopores

Autorzy: Filip Bošković, Jinbo Zhu, Kaikai Chen, Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 19/11, 2019, Strona(/y) 7996-8001, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.9b03184

Multiplexed DNA Identification Using Site Specific dCas9 Barcodes and Nanopore Sensing

Autorzy: Nicole E. Weckman, Niklas Ermann, Richard Gutierrez, Kaikai Chen, James Graham, Ran Tivony, Andrew Heron, Ulrich F. Keyser
Opublikowane w: ACS Sensors, Numer 4/8, 2019, Strona(/y) 2065-2072, ISSN 2379-3694
Wydawca: American Chemcial Society
DOI: 10.1021/acssensors.9b00686

Cation dependent electroosmotic flow in glass nanopores

Autorzy: Jeffrey Mc Hugh, Kurt Andresen, Ulrich F. Keyser
Opublikowane w: Applied Physics Letters, Numer 115/11, 2019, Strona(/y) 113702, ISSN 0003-6951
Wydawca: American Institute of Physics
DOI: 10.1063/1.5116760

Nonlinear Electrophoresis of Highly Charged Nonpolarizable Particles

Autorzy: Soichiro Tottori, Karolis Misiunas, Ulrich F. Keyser, Douwe Jan Bonthuis
Opublikowane w: Physical Review Letters, Numer 123/1, 2019, ISSN 0031-9007
Wydawca: American Physical Society
DOI: 10.1103/PhysRevLett.123.014502

A synthetic enzyme built from DNA flips 107 lipids per second in biological membranes

Autorzy: Alexander Ohmann, Chen-Yu Li, Christopher Maffeo, Kareem Al Nahas, Kevin N. Baumann, Kerstin Göpfrich, Jejoong Yoo, Ulrich F. Keyser, Aleksei Aksimentiev
Opublikowane w: Nature Communications, Numer 9/1, 2018, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-018-04821-5

Density-Dependent Speed-up of Particle Transport in Channels

Autorzy: Karolis Misiunas, Ulrich F. Keyser
Opublikowane w: Physical Review Letters, Numer 122/21, 2019, ISSN 0031-9007
Wydawca: American Physical Society
DOI: 10.1103/PhysRevLett.122.214501

Promoting single-file DNA translocations through nanopores using electro-osmotic flow

Autorzy: Niklas Ermann, Nikita Hanikel, Vivian Wang, Kaikai Chen, Nicole E. Weckman, Ulrich F. Keyser
Opublikowane w: The Journal of Chemical Physics, Numer 149/16, 2018, Strona(/y) 163311, ISSN 0021-9606
Wydawca: American Institute of Physics
DOI: 10.1063/1.5031010

Specific Biosensing Using DNA Aptamers and Nanopores

Autorzy: Jinglin Kong, Jinbo Zhu, Kaikai Chen, Ulrich F. Keyser
Opublikowane w: Advanced Functional Materials, Numer 29/3, 2019, Strona(/y) 1807555, ISSN 1616-301X
Wydawca: John Wiley & Sons Ltd.
DOI: 10.1002/adfm.201807555

Experimental evidence of symmetry breaking of transition-path times

Autorzy: J. Gladrow, M. Ribezzi-Crivellari, F. Ritort, U. F. Keyser
Opublikowane w: Nature Communications, Numer 10/1, 2019, ISSN 2041-1723
Wydawca: Nature Publishing Group
DOI: 10.1038/s41467-018-07873-9

Digital Data Storage Using DNA Nanostructures and Solid-State Nanopores

Autorzy: Kaikai Chen, Jinglin Kong, Jinbo Zhu, Niklas Ermann, Paul Predki, Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 19/2, 2019, Strona(/y) 1210-1215, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.8b04715

Controlling aggregation of cholesterol-modified DNA nanostructures

Autorzy: Alexander Ohmann, Kerstin Göpfrich, Himanshu Joshi, Rebecca F Thompson, Diana Sobota, Neil A Ranson, Aleksei Aksimentiev, Ulrich F Keyser
Opublikowane w: Nucleic Acids Research, Numer 47/21, 2019, Strona(/y) 11441-11451, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkz914

Tailoring Interleaflet Lipid Transfer with a DNA-based Synthetic Enzyme

Autorzy: Diana Sobota, Himanshu Joshi, Alexander Ohmann, Aleksei Aksimentiev, Ulrich F. Keyser
Opublikowane w: Nano Letters, Numer 20/6, 2020, Strona(/y) 4306-4311, ISSN 1530-6984
Wydawca: American Chemical Society
DOI: 10.1021/acs.nanolett.0c00990

Image Encoding Using Multi‐Level DNA Barcodes with Nanopore Readout

Autorzy: Jinbo Zhu; Niklas Ermann; Kaikai Chen; Ulrich F. Keyser
Opublikowane w: Crossref, Numer 2, 2021, ISSN 1613-6810
Wydawca: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.17863/cam.71444

DNA Structural Barcode Copying and Random Access

Autorzy: Filip Bošković, Alexander Ohmann, Ulrich F. Keyser, Kaikai Chen
Opublikowane w: Small Structures, Numer 2/5, 2021, Strona(/y) 2000144, ISSN 2688-4062
Wydawca: Wiley-VCH GmbH
DOI: 10.1002/sstr.202000144

Single molecule based SNP detection using designed DNA carriers and solid-state nanopores

Autorzy: Kong, Jinglin; Zhu, Jinbo; Keyser, Ulrich F.
Opublikowane w: Chemical Communications, Numer 1, 2017, ISSN 1359-7345
Wydawca: Royal Society of Chemistry
DOI: 10.17863/cam.7988

Channel-length dependence of particle diffusivity in confinement

Autorzy: Soichiro Tottori, Karolis Misiunas, Vahe Tshitoyan, Ulrich F. Keyser
Opublikowane w: Soft Matter, Numer 17/20, 2021, Strona(/y) 5131-5136, ISSN 1744-683X
Wydawca: Royal Society of Chemistry
DOI: 10.1039/d1sm00289a

Direction- and Salt-Dependent Ionic Current Signatures for DNA Sensing with Asymmetric Nanopores

Autorzy: Kaikai Chen, Nicholas A.W. Bell, Jinglin Kong, Yu Tian, Ulrich F. Keyser
Opublikowane w: Biophysical Journal, Numer 112/4, 2017, Strona(/y) 674-682, ISSN 0006-3495
Wydawca: Biophysical Society
DOI: 10.1016/j.bpj.2016.12.033

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