The overall scientific objective of the TRICE QFT project is to develop key ingredients necessary to realize an ion trap based large-scale quantum computer, for which it is imperative to have superior control over the efficiency and reliability of already available quantum operations. Despite certain advantages over other physical systems, qubits based on trapped atomic ion systems are susceptible to decoherence, which describes the phase randomization of a quantum superposition state. This unwanted and uncontrolled mechanism poses a serious obstacle in the realization of conditional quantum logic gates (e.g. CNOT), which are essential constituents of arbitrary quantum algorithms. The fidelity of such gates are reduced dramatically if the time required for the gate operation is significantly longer compared to the coherence time of the physical system that is capable of realizing such gates. While current experiments in the project are performed using a small quantum processor based on a linear string of up to three trapped ions, a longer string with a larger number of ions will be explored towards realization of a large-scale quantum computer. Therefore, as a key prerequisite for the technically challenging future experiments, the basic stability and reliability of the current experiments is required to be enhanced by a careful investigation of the systematic error sources. Noise sources that contribute towards systematic errors are mainly associated with the preparation and detection of states, conditional qubit rotation and decoherence owing to magnetic field fluctuation. The project aims at identification and elimination of these noise sources in order to enhance the fidelity of realizable quantum algorithms, such as a quantum Fourier transform, in the existing experimental setup. A critical aspect of the project, especially for experiments with large number of qubits, is to explore all possible ways to combat decoherence effects, thereby increasing the coherence time available for conditional quantum dynamics, and thus, leading to an improvement in the fidelity of conditional quantum logic operations.