Less is more: Single Cell Analysis of Zebrafish Blood Development

Project Information

ZF_Blood

Grant agreement ID: 677501

DOI

10.3030/677501

Project closed

EC signature date 16 February 2016

Start date 1 May 2016

End date 30 April 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 500 000,00

EU contribution

€ 1 500 000,00

Coordinated by

THE CHANCELLOR MASTERS AND SCHOLARS OF THE UNIVERSITY OF CAMBRIDGE
United Kingdom

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (8)

Analysis of endothelial-to-haematopoietic transition at the single cell level identifies cell cycle regulation as a driver of differentiation

Author(s): Giovanni Canu, Emmanouil Athanasiadis, Rodrigo A. Grandy, Jose Garcia-Bernardo, Paulina M. Strzelecka, Ludovic Vallier, Daniel Ortmann, Ana Cvejic
Published in: Genome Biology, Issue 21/1, 2020, ISSN 1474-760X
Publisher: BioMed Central
DOI: 10.1186/s13059-020-02058-4

Unsupervised generative and graph representation learning for modelling cell differentiation

Author(s): Ioana Bica, Helena Andrés-Terré, Ana Cvejic, Pietro Liò
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
Publisher: Nature Publishing Group
DOI: 10.1038/s41598-020-66166-8

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

Author(s): Santiago J. Carmona, Sarah A. Teichmann, Lauren Ferreira, Iain C. Macaulay, Michael J.T. Stubbington, Ana Cvejic, David Gfeller
Published in: Genome Research, Issue 27/3, 2017, Page(s) 451-461, ISSN 1088-9051
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.207704.116

Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis

Author(s): Emmanouil I. Athanasiadis, Jan G. Botthof, Helena Andres, Lauren Ferreira, Pietro Lio, Ana Cvejic
Published in: Nature Communications, Issue 8/1, 2017, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-017-02305-6

CD4-Transgenic Zebrafish Reveal Tissue-Resident Th2- and Regulatory T Cell–like Populations and Diverse Mononuclear Phagocytes

Author(s): Christopher T. Dee, Raghavendar T. Nagaraju, Emmanouil I. Athanasiadis, Caroline Gray, Laura Fernandez del Ama, Simon A. Johnston, Christopher J. Secombes, Ana Cvejic, Adam F. L. Hurlstone
Published in: The Journal of Immunology, Issue 197/9, 2016, Page(s) 3520-3530, ISSN 0022-1767
Publisher: American Association of Immunologists
DOI: 10.4049/jimmunol.1600959

Power analysis of single-cell RNA-sequencing experiments

Author(s): Valentine Svensson, Kedar Nath Natarajan, Lam-Ha Ly, Ricardo J Miragaia, Charlotte Labalette, Iain C Macaulay, Ana Cvejic, Sarah A Teichmann
Published in: Nature Methods, Issue 14/4, 2017, Page(s) 381-387, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/nmeth.4220

Single-cell transcriptional analysis reveals ILC-like cells in zebrafish

Author(s): Pedro P. Hernández, Paulina M. Strzelecka, Emmanouil I. Athanasiadis, Dominic Hall, Ana F. Robalo, Catherine M. Collins, Pierre Boudinot, Jean-Pierre Levraud, Ana Cvejic
Published in: Science Immunology, Issue 3/29, 2018, Page(s) eaau5265, ISSN 2470-9468
Publisher: AAAS
DOI: 10.1126/sciimmunol.aau5265

A cellular census of human lungs identifies novel cell states in health and in asthma

Author(s): Felipe A. Vieira Braga, Gozde Kar, Marijn Berg, Orestes A. Carpaij, Krzysztof Polanski, Lukas M. Simon, Sharon Brouwer, Tomás Gomes, Laura Hesse, Jian Jiang, Eirini S. Fasouli, Mirjana Efremova, Roser Vento-Tormo, Carlos Talavera-López, Marnix R. Jonker, Karen Affleck, Subarna Palit, Paulina M. Strzelecka, Helen V. Firth, Krishnaa T. Mahbubani, Ana Cvejic, Kerstin B. Meyer, Kourosh Saeb-Parsy, M
Published in: Nature Medicine, 2019, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-019-0468-5