Investigating the role of in vivo RNA structure in RNA degradation

Publications

Peer reviewed articles (11)

Novel insights into the pervasive role of RNA structure in post-transcriptional regulation of gene expression in plants

Author(s): Huakun Zhang, Yiliang Ding
Published in: Biochem Soc Trans., 49(4), 2021, Page(s) 1829–1839, ISSN 0300-5127
Publisher: Portland Press, Ltd.
DOI: 10.1042/bst20210318

Recent advances in RNA structurome

Author(s): Xu, B., Zhu, Y., Cao, C., Chen, H., Jin, Q., Li, G., Ma, J., Zhao, J., Zhu, J. & Ding, Y
Published in: Science China Life Sciences, 2022, ISSN 1674-7305
Publisher: Zhongguo Kexue Zazhishe/Science in China Press
DOI: 10.1007/s11427-021-2116-2

G-quadruplex structures trigger RNA phase separation

Author(s): Yueying Zhang, Minglei Yang, Susan Duncan, Xiaofei Yang, Mahmoud A S Abdelhamid, Lin Huang, Huakun Zhang, Philip N Benfey, Zoë A E Waller, Yiliang Ding
Published in: Nucleic Acids Research, 2019, 2019, Page(s) 11746-11754, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkz978

The Simultaneous Coupling of Transcription and Splicing in Plants

Author(s): Yueying Zhang, Yiliang Ding
Published in: Molecular Plant, 13/2, 2020, Page(s) 184-186, ISSN 1674-2052
Publisher: Oxford University Press
DOI: 10.1016/j.molp.2020.01.011

Deep Learning in RNA Structure Studies

Author(s): Yu, H., Qi, Y. & Ding, Y
Published in: Frontiers in Molecular Biosciences, 9, 2022, ISSN 2296-889X
Publisher: Frontiers Media
DOI: 10.3389/fmolb.2022.869601

In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants

Author(s): Zhenshan Liu, Qi Liu, Xiaofei Yang, Yueying Zhang, Matthew Norris, Xiaoxi Chen, Jitender Cheema, Huakun Zhang, Yiliang Ding
Published in: Genome Biology, 22, 2021, ISSN 1474-760X
Publisher: BMC
DOI: 10.1186/s13059-020-02236-4

Emergence of vascular plants

Author(s): Yiliang Ding, Chun Kit Kwok
Published in: Nature Plants, 4/6, 2018, Page(s) 325-326, ISSN 2055-0278
Publisher: Springer Nature
DOI: 10.1038/s41477-018-0159-0

New Era of Studying RNA Secondary Structure and Its Influence on Gene Regulation in Plants

Author(s): Xiaofei Yang, Minglei Yang, Hongjing Deng, Yiliang Ding
Published in: Frontiers in Plant Science, 9, 2018, ISSN 1664-462X
Publisher: Frontiers Media S. A.
DOI: 10.3389/fpls.2018.00671

Rice In Vivo RNA Structurome Reveals RNA Secondary Structure Conservation and Divergence in Plants

Author(s): Hongjing Deng, Jitender Cheema, Hang Zhang, Hugh Woolfenden, Matthew Norris, Zhenshan Liu, Qi Liu, Xiaofei Yang, Minglei Yang, Xian Deng, Xiaofeng Cao, Yiliang Ding
Published in: Molecular Plant, 11/4, 2018, Page(s) 607-622, ISSN 1674-2052
Publisher: Oxford University Press
DOI: 10.1016/j.molp.2018.01.008

RNA G-quadruplex structures exist and function in vivo in plants

Author(s): Xiaofei Yang; Jitender Cheema; Yueying Zhang; Hongjing Deng; Hongjing Deng; Susan Duncan; Mubarak I. Umar; Jieyu Zhao; Qi Liu; Qi Liu; Xiaofeng Cao; Chun Kit Kwok; Yiliang Ding
Published in: Genome Biology, 21, 2020, ISSN 1474-760X
Publisher: BioMed Central
DOI: 10.1186/s13059-020-02142-9

Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo

Author(s): Minglei Yang, Hugh C Woolfenden, Yueying Zhang, Xiaofeng Fang, Qi Liu, Maria L Vigh, Jitender Cheema, Xiaofei Yang, Matthew Norris, Sha Yu, Alberto Carbonell, Peter Brodersen, Jiawei Wang, Yiliang Ding
Published in: Nucleic Acids Research, 48(15), 2020, Page(s) 8767–8781, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkaa577

Non-peer reviewed articles (1)

RNA G-quadruplex structure contributes to cold adaptation in plants

Author(s): Xiaofei Yang, Haopeng Yu, Susan Duncan, Yueying Zhang, Jitender Cheema, J. Benjamin Miller, Jie Zhang, Chun Kit Kwok, Huakun Zhang, Yiliang Ding
Published in: bioRxiv, 2022, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.03.04.482910