Investigating the role of in vivo RNA structure in RNA degradation

Publikacje

Novel insights into the pervasive role of RNA structure in post-transcriptional regulation of gene expression in plants

Autorzy: Huakun Zhang, Yiliang Ding
Opublikowane w: Biochem Soc Trans., Numer 49(4), 2021, Strona(/y) 1829–1839, ISSN 0300-5127
Wydawca: Portland Press, Ltd.
DOI: 10.1042/bst20210318

Recent advances in RNA structurome

Autorzy: Xu, B., Zhu, Y., Cao, C., Chen, H., Jin, Q., Li, G., Ma, J., Zhao, J., Zhu, J. & Ding, Y
Opublikowane w: Science China Life Sciences, 2022, ISSN 1674-7305
Wydawca: Zhongguo Kexue Zazhishe/Science in China Press
DOI: 10.1007/s11427-021-2116-2

G-quadruplex structures trigger RNA phase separation

Autorzy: Yueying Zhang, Minglei Yang, Susan Duncan, Xiaofei Yang, Mahmoud A S Abdelhamid, Lin Huang, Huakun Zhang, Philip N Benfey, Zoë A E Waller, Yiliang Ding
Opublikowane w: Nucleic Acids Research, Numer 2019, 2019, Strona(/y) 11746-11754, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkz978

The Simultaneous Coupling of Transcription and Splicing in Plants

Autorzy: Yueying Zhang, Yiliang Ding
Opublikowane w: Molecular Plant, Numer 13/2, 2020, Strona(/y) 184-186, ISSN 1674-2052
Wydawca: Oxford University Press
DOI: 10.1016/j.molp.2020.01.011

Deep Learning in RNA Structure Studies

Autorzy: Yu, H., Qi, Y. & Ding, Y
Opublikowane w: Frontiers in Molecular Biosciences, Numer 9, 2022, ISSN 2296-889X
Wydawca: Frontiers Media
DOI: 10.3389/fmolb.2022.869601

In vivo nuclear RNA structurome reveals RNA-structure regulation of mRNA processing in plants

Autorzy: Zhenshan Liu, Qi Liu, Xiaofei Yang, Yueying Zhang, Matthew Norris, Xiaoxi Chen, Jitender Cheema, Huakun Zhang, Yiliang Ding
Opublikowane w: Genome Biology, Numer 22, 2021, ISSN 1474-760X
Wydawca: BMC
DOI: 10.1186/s13059-020-02236-4

RNA G-quadruplex structures exist and function in vivo in plants

Autorzy: Xiaofei Yang; Jitender Cheema; Yueying Zhang; Hongjing Deng; Hongjing Deng; Susan Duncan; Mubarak I. Umar; Jieyu Zhao; Qi Liu; Qi Liu; Xiaofeng Cao; Chun Kit Kwok; Yiliang Ding
Opublikowane w: Genome Biology, Numer 21, 2020, ISSN 1474-760X
Wydawca: BioMed Central
DOI: 10.1186/s13059-020-02142-9

Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo

Autorzy: Minglei Yang, Hugh C Woolfenden, Yueying Zhang, Xiaofeng Fang, Qi Liu, Maria L Vigh, Jitender Cheema, Xiaofei Yang, Matthew Norris, Sha Yu, Alberto Carbonell, Peter Brodersen, Jiawei Wang, Yiliang Ding
Opublikowane w: Nucleic Acids Research, Numer 48(15), 2020, Strona(/y) 8767–8781, ISSN 0305-1048
Wydawca: Oxford University Press
DOI: 10.1093/nar/gkaa577

RNA G-quadruplex structure contributes to cold adaptation in plants

Autorzy: Xiaofei Yang, Haopeng Yu, Susan Duncan, Yueying Zhang, Jitender Cheema, J. Benjamin Miller, Jie Zhang, Chun Kit Kwok, Huakun Zhang, Yiliang Ding
Opublikowane w: bioRxiv, 2022, ISSN 2692-8205
Wydawca: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.03.04.482910

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