The evolutionary significance of synonymous variations: Can codon usage preferences drive the propagation of antibiotic resistance?

Project Information

HGTCODONUSE

Grant agreement ID: 682819

DOI

10.3030/682819

Project closed

EC signature date 13 April 2016

Start date 1 June 2016

End date 31 May 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 992 366,00

EU contribution

€ 1 992 366,00

Coordinated by

CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
France

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (5)

PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets.

Author(s): Léa Pradier; Tazzio Tissot; Anna-Sophie Fiston-Lavier; Stéphanie Bedhomme
Published in: ISSN: 1471-2105, Issue 2, 2021, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-021-04270-w

Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa: gene retention, amelioration and compensatory evolution

Author(s): Martijn Callens, Celine Scornavacca and Stéphanie Bedhomme
Published in: Microbial Genomics, 2021, ISSN 2057-5858
Publisher: Microbiology Society
DOI: 10.1099/mgen.0.000587

Plasmid and clonal interference during post horizontal gene transfer evolution

Author(s): S. Bedhomme, D. Perez Pantoja, I. G. Bravo
Published in: Molecular Ecology, Issue 26/7, 2017, Page(s) 1832-1847, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.14056

Evolutionary Changes after Translational Challenges Imposed by Horizontal Gene Transfer

Author(s): Stéphanie Bedhomme, Dolors Amorós-Moya, Luz M Valero, Nùria Bonifaci, Miquel-Àngel Pujana, Ignacio G Bravo
Published in: Genome Biology and Evolution, Issue 11/3, 2019, Page(s) 814-831, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evz031

Read between the Lines: Diversity of Nontranslational Selection Pressures on Local Codon Usage.

Author(s): Martijn Callens; Léa Pradier; Michael Finnegan; Caroline Rose; Stéphanie Bedhomme
Published in: Genome Biology and Evolution, Issue 2, 2021, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evab097