The evolutionary significance of synonymous variations: Can codon usage preferences drive the propagation of antibiotic resistance?

Project Information

HGTCODONUSE

Grant agreement ID: 682819

DOI 10.3030/682819

Project closed

EC signature date 13 April 2016

Start date 1 June 2016

End date 31 May 2022

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 992 366,00

EU contribution € 1 992 366,00

Coordinated by

CENTRE NATIONAL DE LA RECHERCHE SCIENTIFIQUE CNRS
France

Publications

Peer reviewed articles (5)

PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets.

Author(s): Léa Pradier; Tazzio Tissot; Anna-Sophie Fiston-Lavier; Stéphanie Bedhomme
Published in: ISSN: 1471-2105, Issue 2, 2021, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-021-04270-w

Evolutionary responses to codon usage of horizontally transferred genes in Pseudomonas aeruginosa: gene retention, amelioration and compensatory evolution

Author(s): Martijn Callens, Celine Scornavacca and Stéphanie Bedhomme
Published in: Microbial Genomics, 2021, ISSN 2057-5858
Publisher: Microbiology Society
DOI: 10.1099/mgen.0.000587

Plasmid and clonal interference during post horizontal gene transfer evolution

Author(s): S. Bedhomme, D. Perez Pantoja, I. G. Bravo
Published in: Molecular Ecology, Issue 26/7, 2017, Page(s) 1832-1847, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.14056

Evolutionary Changes after Translational Challenges Imposed by Horizontal Gene Transfer

Author(s): Stéphanie Bedhomme, Dolors Amorós-Moya, Luz M Valero, Nùria Bonifaci, Miquel-Àngel Pujana, Ignacio G Bravo
Published in: Genome Biology and Evolution, Issue 11/3, 2019, Page(s) 814-831, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evz031

Read between the Lines: Diversity of Nontranslational Selection Pressures on Local Codon Usage.

Author(s): Martijn Callens; Léa Pradier; Michael Finnegan; Caroline Rose; Stéphanie Bedhomme
Published in: Genome Biology and Evolution, Issue 2, 2021, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evab097