Advanced toolbox for rapid and cost-effective functional metagenomic screening - microbiology meets microfluidics. | METAFLUIDICS | Project | Results | H2020 | CORDIS

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Pubblicazioni

Cecembia

Autori: Albuquerque Luciana; Rainey Fred; Egas Conceiçao; Froufe Hugo; Raposo Pedro; Da Costa, S, Milton
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 6, 2018
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458277

Albidovulum

Autori: Albuquerque Luciana; Froufre Hugo; Conceiçao Egas; Rainy Fred; Da Costa, S
Pubblicato in: Whitman, WB (Ed), Bergey's Manual of Systematics of Archaea and Bacteria, Numero 9, 2018
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458176

Meiothermus

Autori: Albuquerque Luciana; Rainey Fred; Da Costa, S
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 8, 2018
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458314

Pullulanibacillus

Autori: Albuquerque Luciana; Tiago Igor; Veríssimo António; Da Costa, S, Milton
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 9, 2019
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458514

Hydrotalea

Autori: Albuquerque Luciana; Egas Conceição; Froufe Hugo; Da Costa, S
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 7, 2019
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458512

Tepidicella

Autori: Albuquerque Luciana; Rainey Fred; Da Costa, S, Milton
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 6, 2019
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458506

Salirhabdus

Autori: Albuquerque Luciana; Igor, Tiago; António, Veríssimo; Da Costa, S
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 1, 2019
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458495

Gaiella

Autori: Albuquerque Luciana; Rainey Fred; Da Costa, S
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 2, 2018
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458297

Aquicella

Autori: Albuquerque Luciana; Rainey, Fred; Da Costa, S
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 13, 2018
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458275

Rubritepida

Autori: Albuquerque Luciana; Egas Conceiçao; Da Costa, S
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 11, 2019
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458332

Truepera

Autori: Albuquerque Luciana; Rainey Fred; Da Costa, S
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 6, 2018
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458508

Tepidamorphus

Autori: Albuquerque Luciana; Rainey Fred; Da Costa, S
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 10, 2018
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458498

Eliorea

Autori: Da Costa, S; Albuquerque Luciana; Rainey Fred; Froufe Hugo; Roxo Inês; Raposo Pedro; Egas Conceiçao
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, Numero 2, 2019
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458286

Herminiimonas

Autori: Albuquerque Luciana; Rainey Fred; Da Costa, S, Milton
Pubblicato in: Bergey's Manual of Systematics of Archaea and Bacteria, 2019
Editore: John Wiley & Sons, Inc.
DOI: 10.5281/zenodo.3458306

Investigating host-microbiome interactions by droplet based microfluidics

Autori: Alexandra S. Tauzin, Mariana Rangel Pereira, Liisa D. Van Vliet, Pierre-Yves Colin, Elisabeth Laville, Jeremy Esque, Sandrine Laguerre, Bernard Henrissat, Nicolas Terrapon, Vincent Lombard, Marion Leclerc, Joël Doré, Florian Hollfelder, Gabrielle Potocki-Veronese
Pubblicato in: Microbiome, Numero 8/1, 2020, ISSN 2049-2618
Editore: Springer Nature
DOI: 10.1186/s40168-020-00911-z

A Modular Vector Toolkit with a Tailored Set of Thermosensors To Regulate Gene Expression in Thermus thermophilus

Autori: Carlos Verdú, Esther Sanchez, Carmen Ortega, Aurelio Hidalgo, José Berenguer, Mario Mencía
Pubblicato in: ACS Omega, Numero 4/11, 2019, Pagina/e 14626-14632, ISSN 2470-1343
Editore: American Chemical Society Publications (ACS Publications)
DOI: 10.1021/acsomega.9b02107

Investigating Host Microbiota Relationships Through Functional Metagenomics

Autori: Elisabeth Laville, Josette Perrier, Nada Bejar, Marc Maresca, Jeremy Esque, Alexandra S. Tauzin, Emna Bouhajja, Marion Leclerc, Elodie Drula, Bernard Henrissat, Stephane Berdah, Eric Di Pasquale, Patrick Robe, Gabrielle Potocki-Veronese
Pubblicato in: Frontiers in Microbiology, Numero 10, 2019, ISSN 1664-302X
Editore: Frontiers Media
DOI: 10.3389/fmicb.2019.01286

Complete Genome Sequence of Mycolicibacterium hassiacum DSM 44199.

Autori: Alba Blesa; Eva Sacristán-Horcajada; José Berenguer; Mercedes Sánchez
Pubblicato in: Microbiology Resource Anouncements, Numero 3, 2019, Pagina/e e01522-18, ISSN 2576-098X
Editore: AMERICAN SOCIETY FOR MICROBIOLOGY
DOI: 10.1128/mra.01522-18

Developing robust protein analysis profiles to identify bacterial acid phosphatases in genomes and metagenomic libraries

Autori: Zulema Udaondo, Estrella Duque, Abdelali Daddaoua, Carlos Caselles, Amalia Roca, Paloma Pizarro‐Tobias, Juan L. Ramos
Pubblicato in: Environmental Microbiology, Numero 22/8, 2020, Pagina/e 3561-3571, ISSN 1462-2912
Editore: Blackwell Publishing Inc.
DOI: 10.1111/1462-2920.15138

Novel Genes Involved in Resistance to Both Ultraviolet Radiation and Perchlorate From the Metagenomes of Hypersaline Environments

Autori: María Lamprecht-Grandío, Marta Cortesão, Salvador Mirete, Macarena Benguigui de la Cámara, Carolina G. de Figueras, Danilo Pérez-Pantoja, Joseph John White, María Eugenia Farías, Ramon Rosselló-Móra, José Eduardo González-Pastor
Pubblicato in: Frontiers in Microbiology, Numero 11, 2020, ISSN 1664-302X
Editore: Frontiers Media
DOI: 10.3389/fmicb.2020.00453

Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria

Autori: Zhi Wang, Alexandra S. Tauzin, Elisabeth Laville, Pietro Tedesco, Fabien Létisse, Nicolas Terrapon, Pascale Lepercq, Myriam Mercade, Gabrielle Potocki-Veronese
Pubblicato in: mSphere, Numero 5/1, 2020, ISSN 2379-5042
Editore: American Society for Microbiology
DOI: 10.1128/msphere.00771-19

Effect of design geometry, exposure energy, cytophilic molecules, cell type and load in fabrication of single-cell arrays using micro-contact printing

Autori: Swapnil Vilas Bhujbal, Maren Dekov, Vegar Ottesen, Karen Dunker, Rahmi Lale, Marit Sletmoen
Pubblicato in: Scientific Reports, Numero 10/1, 2020, ISSN 2045-2322
Editore: Nature Publishing Group
DOI: 10.1038/s41598-020-72080-w

In Vitro Synthesis and Crystallization of β-1,4-Mannan

Autori: Florent Grimaud, Sandra Pizzut-Serin, Laurence Tarquis, Simon Ladevèze, Sandrine Morel, Jean-Luc Putaux, Gabrielle Potocki-Veronese
Pubblicato in: Biomacromolecules, Numero 20/2, 2018, Pagina/e 846-853, ISSN 1525-7797
Editore: American Chemical Society
DOI: 10.1021/acs.biomac.8b01457

Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Autori: Ao Li, Elisabeth Laville, Laurence Tarquis, Vincent Lombard, David Ropartz, Nicolas Terrapon, Bernard Henrissat, David Guieysse, Jeremy Esque, Julien Durand, Diego P. Morgavi, Gabrielle Potocki-Veronese
Pubblicato in: Microbial Genomics, Numero 6/10, 2020, ISSN 2057-5858
Editore: Microbiology Society
DOI: 10.1099/mgen.0.000404

Use of photoswitchable fluorescent proteins for droplet-based microfluidic screening

Autori: Adilya Dagkesamanskaya, Krzysztof Langer, Alexandra S. Tauzin, Catherine Rouzeau, Delphine Lestrade, Gabrielle Potocki-Veronese, Laurent Boitard, Jérôme Bibette, Jean Baudry, Denis Pompon, Véronique Anton-Leberre
Pubblicato in: Journal of Microbiological Methods, Numero 147, 2018, Pagina/e 59-65, ISSN 0167-7012
Editore: Elsevier BV
DOI: 10.1016/j.mimet.2018.03.001

Mechanisms and Regulation of Extracellular DNA Release and Its Biological Roles in Microbial Communities

Autori: Alejandra L. Ibáñez de Aldecoa, Olga Zafra, José E. González-Pastor
Pubblicato in: Frontiers in Microbiology, Numero 8, 2017, ISSN 1664-302X
Editore: Frontiers Media
DOI: 10.3389/fmicb.2017.01390

Role of Archaeal HerA Protein in the Biology of the Bacterium Thermus thermophilus

Autori: Alba Blesa, Nieves Quintans, Ignacio Baquedano, Carlos Mata, José Castón, José Berenguer
Pubblicato in: Genes, Numero 8/5, 2017, Pagina/e 130, ISSN 2073-4425
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes8050130

Into the Thermus Mobilome: Presence, Diversity and Recent Activities of Insertion Sequences Across Thermus spp.

Autori: Alba Blesa, Mercedes Sánchez, Eva Sacristán-Horcajada, Sandra González-de la Fuente, Ramón Peiró, José Berenguer
Pubblicato in: Microorganisms, Numero 7/1, 2019, Pagina/e 25, ISSN 2076-2607
Editore: MDPI
DOI: 10.3390/microorganisms7010025

Raineya orbicola gen. nov., sp. nov. a slightly thermophilic bacterium of the phylum Bacteroidetes and the description of Raineyaceae fam. nov.

Autori: Luciana Albuquerque, Ana Rita M. Polónia, Cristina Barroso, Hugo J. C. Froufe, Olga Lage, Alexandre Lobo-da-Cunha, Conceição Egas, Milton S. da Costa
Pubblicato in: International Journal of Systematic and Evolutionary Microbiology, Numero 68/4, 2018, Pagina/e 982-989, ISSN 1466-5026
Editore: Society for General Microbiology
DOI: 10.1099/ijsem.0.002556

Vibrio communities in scleractinian corals differ according to health status and geographic location in the Mediterranean Sea

Autori: Esther Rubio-Portillo, Juan F. Gago, Manuel Martínez-García, Luigi Vezzulli, Ramon Rosselló-Móra, Josefa Antón, Alfonso A. Ramos-Esplá
Pubblicato in: Systematic and Applied Microbiology, Numero 41/2, 2018, Pagina/e 131-138, ISSN 0723-2020
Editore: Elsevier BV
DOI: 10.1016/j.syapm.2017.11.007

Biogeographic Differences in the Microbiome and Pathobiome of the Coral Cladocora caespitosa in the Western Mediterranean Sea

Autori: Esther Rubio-Portillo, Diego K. Kersting, Cristina Linares, Alfonso A. Ramos-Esplá, Josefa Antón
Pubblicato in: Frontiers in Microbiology, Numero 9, 2018, ISSN 1664-302X
Editore: Frontiers Media
DOI: 10.3389/fmicb.2018.00022

Discovery of carbamate degrading enzymes by functional metagenomics

Autori: Lisa Ufarté, Elisabeth Laville, Sophie Duquesne, Diego Morgavi, Patrick Robe, Christophe Klopp, Angeline Rizzo, Sandra Pizzut-Serin, Gabrielle Potocki-Veronese
Pubblicato in: PLOS ONE, Numero 12/12, 2017, Pagina/e e0189201, ISSN 1932-6203
Editore: Public Library of Science
DOI: 10.1371/journal.pone.0189201

Hierarchical Control of Nitrite Respiration by Transcription Factors Encoded within Mobile Gene Clusters of Thermus thermophilus

Autori: Laura Alvarez, Nieves G. Quintáns, Alba Blesa, Ignacio Baquedano, Mario Mencía, Carlos Bricio, José Berenguer
Pubblicato in: Genes, Numero 8/12, 2017, Pagina/e 361, ISSN 2073-4425
Editore: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes8120361

Solimicrobium silvestre gen. nov., sp. nov., isolated from alpine forest soil

Autori: Rosa Margesin, Luciana Albuquerque, De-Chao Zhang, Hugo J. C. Froufe, Rita Severino, Inês Roxo, Conceição Egas, Milton S. da Costa
Pubblicato in: International Journal of Systematic and Evolutionary Microbiology, Numero 68/8, 2018, Pagina/e 2491-2498, ISSN 1466-5026
Editore: Society for General Microbiology
DOI: 10.1099/ijsem.0.002861

Transfer of Meiothermus chliarophilus (Tenreiro et al.1995) Nobre et al. 1996, Meiothermus roseus Ming et al. 2016, Meiothermus terrae Yu et al. 2014 and Meiothermus timidus Pires et al. 2005, to Calidithermus gen. nov., as Calidithermus chliarophilus comb. nov., Calidithermus roseus comb. nov., Calidithermus terrae comb. nov. and Calidithermus timidus comb. nov., respectively, and emended descrip

Autori: Pedro Raposo, Tomeu Viver, Luciana Albuquerque, Hugo Froufe, Cristina Barroso, Conceição Egas, Ramon Rosselló-Móra, Milton S. da Costa
Pubblicato in: International Journal of Systematic and Evolutionary Microbiology, Numero 69/4, 2019, Pagina/e 1060-1069, ISSN 1466-5026
Editore: Society for General Microbiology
DOI: 10.1099/ijsem.0.003270

High‐quality draft genome sequence of Gaiella occulta isolated from a 150 meter deep mineral water borehole and comparison with the genome sequences of other deep‐branching lineages of the phylum Actinobacteria

Autori: Rita Severino, Hugo J. C. Froufe, Cristina Barroso, Luciana Albuquerque, Alexandre Lobo‐da‐Cunha, Milton S. da Costa, Conceição Egas
Pubblicato in: MicrobiologyOpen, 2019, Pagina/e e840, ISSN 2045-8827
Editore: John Wiley and Sons Inc.
DOI: 10.1002/mbo3.840

Are in vivo selections on the path to extinction?

Autori: Berenguer, José; Mencía, Mario; Hidalgo, Aurelio
Pubblicato in: Microbial Biotechnology, Numero 1, 2017, Pagina/e 46-49, ISSN 1751-7915
Editore: Wiley
DOI: 10.1111/1751-7915.12490

Virulence as a Side Effect of Interspecies Interaction in Vibrio Coral Pathogens.

Autori: Josefa Antón; Andrés Mauricio Caraballo-Rodríguez; Forest Rohwer; Ana B. Martin-Cuadrado; Esther Rubio-Portillo; Esther Rubio-Portillo; Pieter C. Dorrestein
Pubblicato in: mBio, Numero 1, 2020, ISSN 2150-7511
Editore: American Society for Microbiology
DOI: 10.1128/mbio.00201-20

Comparative genome sequence analysis of several species in the genus Tepidimonas and the description of a novel species Tepidimonas charontis sp. nov.

Autori: Luciana Albuquerque, Nadine Castelhano, Pedro Raposo, Hugo J. C. Froufe, Igor Tiago, Rita Severino, Inês Roxo, Inês Gregório, Cristina Barroso, Conceição Egas, Milton S. da Costa
Pubblicato in: International Journal of Systematic and Evolutionary Microbiology, Numero 70/3, 2020, Pagina/e 1596-1604, ISSN 1466-5026
Editore: Society for General Microbiology
DOI: 10.1099/ijsem.0.003942

Análisis del Pangenoma de Pseudomonas putida

Autori: Udaondo Domínguez, Zulema
Pubblicato in: Numero 1, 2016
Editore: Universidad de Granada

Diritti di proprietà intellettuale

PLANT GROWTH PROMOTING MICROORGANISM AND ENZYMES FOR SOIL BIOGENIC CYCLES

Numero candidatura/pubblicazione: 18 382861
Data: 2018-11-28
Candidato/i: BIOILIBERIS RESEARCH AND DEVELOPMENT SL

STRAINS CAPABLE OF PRODUCING PLANT GROWTH-STIMULATING COMPOUNDS

Numero candidatura/pubblicazione: 18 382933
Data: 2018-12-17
Candidato/i: BIOILIBERIS RESEARCH AND DEVELOPMENT SL

MODULATION OF GENE EXPRESSION

Numero candidatura/pubblicazione: 20 18058227
Data: 2018-03-29

Advanced toolbox for rapid and cost-effective functional metagenomic screening - microbiology meets microfluidics.

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