Deliverables
Scientific publications, patents or congress contribution and outreach
WP6 - Scientific publications, patents or congress contribution and outreachScientific publications, patents or congress contribution and outreach involving work performed in WP6 Cloning & Expression Optimization
WP4 - Scientific publications, patents or congress contribution and outreachScientific publications, patents or congress contribution and outreach involving work in WP4
Scientific publications, patents or congress contribution and outreachScientific publications, patents or congress contribution and outreach involving work carried out in WP8 Activity Screening & Characterization
WP3 - Scientific publications, patents or congress contribution and outreachScientific publications, patents or congress contribution and outreach
Publications
Author(s):
Martin Steinegger, Johannes Söding
Published in:
Nature Biotechnology, Issue 35, 2017, Page(s) 1026–1028, ISSN 1087-0156
Publisher:
Nature Publishing Group
DOI:
10.1038/nbt.3988
Author(s):
Magdalena Plotka, Enea Sancho-Vaello, Sebastian Dorawa, Anna-Karina Kaczorowska, Lukasz P. Kozlowski, Tadeusz Kaczorowski, Kornelius Zeth
Published in:
Scientific Reports, Issue 9/1, 2019, ISSN 2045-2322
Publisher:
Nature Publishing Group
DOI:
10.1038/s41598-018-37417-6
Author(s):
Clovis Galiez, Matthias Siebert, François Enault, Jonathan Vincent, Johannes Söding
Published in:
Bioinformatics, Issue 33/19, 2017, Page(s) 3113-3114, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/btx383
Author(s):
Yuchen Wang, Beibei Chen, Mengzhuo Cao, Linshan Sima, David Prangishvili, Xiangdong Chen, Mart Krupovic
Published in:
Journal of General Virology, Issue 99/3, 2018, Page(s) 416-421, ISSN 0022-1317
Publisher:
Society for General Microbiology
DOI:
10.1099/jgv.0.001009
Author(s):
Denis Ptchelkine, Ashley Gillum, Tomohiro Mochizuki, Soizick Lucas-Staat, Ying Liu, Mart Krupovic, Simon E. V. Phillips, David Prangishvili, Juha T. Huiskonen
Published in:
Nature Communications, Issue 8/1, 2017, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-017-01668-0
Author(s):
Roux , Simon; Adriaenssens , Evelien; Dutilh , Bas ,; Koonin , Eugene; Kropinski , Andrew; Krupovic , Mart; Kuhn , Jens; Lavigne , Rob; Brister , J Rodney; Varsani , Arvind; Amid , Clara; Aziz , Ramy; Bordenstein , Seth; Bork , Peer; Breitbart , Mya; Cochrane , Guy; Daly , Rebecca; Desnues , Christelle; Duhaime , Melissa; Emerson , Joanne; Enault , François; Fuhrman , Jed; Hingamp , Pascal; Hugen
Published in:
https://hal.archives-ouvertes.fr/hal-01982207, Issue 10, 2019, ISSN 1087-0156
Publisher:
Nature Publishing Group
DOI:
10.3929/ethz-b-000315358
Author(s):
Mart Krupovic, Virginija Cvirkaite-Krupovic, Jaime Iranzo, David Prangishvili, Eugene V. Koonin
Published in:
Virus Research, Issue 244, 2018, Page(s) 181-193, ISSN 0168-1702
Publisher:
Elsevier BV
DOI:
10.1016/j.virusres.2017.11.025
Author(s):
Ruth-Anne Sandaa, Gunnar Bratbak
Published in:
Viruses, Issue 10/8, 2018, Page(s) 442, ISSN 1999-4915
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/v10080442
Author(s):
Milot Mirdita, Lars von den Driesch, Clovis Galiez, Maria J. Martin, Johannes Söding, Martin Steinegger
Published in:
Nucleic Acids Research, Issue 45/D1, 2017, Page(s) D170-D176, ISSN 0305-1048
Publisher:
Oxford University Press
DOI:
10.1093/nar/gkw1081
Author(s):
Fengbin Wang, Diana P Baquero, Zhangli Su, Tomasz Osinski, David Prangishvili, Edward H Egelman, Mart Krupovic
Published in:
Virus Evolution, Issue 6/1, 2020, ISSN 2057-1577
Publisher:
oxford university press
DOI:
10.1093/ve/veaa023
Author(s):
Ying Liu, Tomasz Osinski, Fengbin Wang, Mart Krupovic, Stefan Schouten, Peter Kasson, David Prangishvili, Edward H. Egelman
Published in:
Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-018-05684-6
Author(s):
David Prangishvili, Dennis H. Bamford, Patrick Forterre, Jaime Iranzo, Eugene V. Koonin, Mart Krupovic
Published in:
Nature Reviews Microbiology, Issue 15/12, 2017, Page(s) 724-739, ISSN 1740-1526
Publisher:
Nature Publishing Group
DOI:
10.1038/nrmicro.2017.125
Author(s):
Mart Krupovic, Kira S. Makarova, Yuri I. Wolf, Sofia Medvedeva, David Prangishvili, Patrick Forterre, Eugene V. Koonin
Published in:
Environmental Microbiology, Issue 21/6, 2019, Page(s) 2056-2078, ISSN 1462-2912
Publisher:
Blackwell Publishing Inc.
DOI:
10.1111/1462-2920.14564
Author(s):
Carolina M. Mizuno, Charlotte Guyomar, Simon Roux, Régis Lavigne, Francisco Rodriguez-Valera, Matthew B. Sullivan, Reynald Gillet, Patrick Forterre, Mart Krupovic
Published in:
Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-019-08672-6
Author(s):
Ying Liu, Sonoko Ishino, Yoshizumi Ishino, Gérard Pehau-Arnaudet, Mart Krupovic, David Prangishvili
Published in:
Journal of Virology, Issue 91/13, 2017, ISSN 0022-538X
Publisher:
American Society for Microbiology
DOI:
10.1128/JVI.00589-17
Author(s):
Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding
Published in:
BMC Bioinformatics, Issue 20/1, 2019, ISSN 1471-2105
Publisher:
BioMed Central
DOI:
10.1186/s12859-019-3019-7
Author(s):
Bashar Ibrahim, Ksenia Arkhipova, Arno Andeweg, Susana Posada-Céspedes, François Enault, Arthur Gruber, Eugene Koonin, Anne Kupczok, Philippe Lemey, Alice McHardy, Dino McMahon, Brett Pickett, David Robertson, Richard Scheuermann, Alexandra Zhernakova, Mark Zwart, Alexander Schönhuth, Bas Dutilh, Manja Marz
Published in:
Viruses, Issue 10/5, 2018, Page(s) 256, ISSN 1999-4915
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/v10050256
Author(s):
Sofia Medvedeva, Ying Liu, Eugene V. Koonin, Konstantin Severinov, David Prangishvili, Mart Krupovic
Published in:
Nature Communications, Issue 10/1, 2019, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-019-13205-2
Author(s):
Ying Liu, David Brandt, Sonoko Ishino, Yoshizumi Ishino, Eugene V. Koonin, Jörn Kalinowski, Mart Krupovic, David Prangishvili
Published in:
Environmental Microbiology, Issue 21/6, 2019, Page(s) 2002-2014, ISSN 1462-2912
Publisher:
Blackwell Publishing Inc.
DOI:
10.1111/1462-2920.14479
Author(s):
Jakub Barylski, François Enault, Bas E Dutilh, Margo BP Schuller, Robert A Edwards, Annika Gillis, Jochen Klumpp, Petar Knezevic, Mart Krupovic, Jens H Kuhn, Rob Lavigne, Hanna M Oksanen, Matthew B Sullivan, Ho Bin Jang, Peter Simmonds, Pakorn Aiewsakun, Johannes Wittmann, Igor Tolstoy, J Rodney Brister, Andrew M Kropinski, Evelien M Adriaenssens
Published in:
Systematic Biology, Issue 69/1, 2019, Page(s) 110-123, ISSN 1063-5157
Publisher:
Taylor & Francis
DOI:
10.1093/sysbio/syz036
Author(s):
Jan-Philipp Schwarzhans, Tobias Luttermann, Daniel Wibberg, Anika Winkler, Wolfgang Hübner, Thomas Huser, Jörn Kalinowski, Karl Friehs
Published in:
Frontiers in Microbiology, Issue 8, 2017, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2017.00780
Author(s):
Jonathan Colombet, Hermine Billard, Bernard Viguès, Stéphanie Balor, Christelle Boulé, Lucie Geay, Karim Benzerara, Nicolas Menguy, Guy Ilango, Maxime Fuster, François Enault, Corinne Bardot, Véronique Gautier, Angia Sriram Pradeep Ram, Télesphore Sime-Ngando
Published in:
Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X
Publisher:
Frontiers Media
DOI:
10.3389/fmicb.2019.02376
Author(s):
Martin Steinegger, Johannes Söding
Published in:
Nature Communications, Issue 9/1, 2018, ISSN 2041-1723
Publisher:
Nature Publishing Group
DOI:
10.1038/s41467-018-04964-5
Author(s):
Milot Mirdita, Martin Steinegger, Johannes Söding
Published in:
Bioinformatics, Issue 35/16, 2019, Page(s) 2856-2858, ISSN 1367-4803
Publisher:
Oxford University Press
DOI:
10.1093/bioinformatics/bty1057
Author(s):
Eli Levy Karin, Milot Mirdita, Johannes Söding
Published in:
Microbiome, Issue 8/1, 2020, ISSN 2049-2618
Publisher:
Springer Nature
DOI:
10.1186/s40168-020-00808-x
Author(s):
Stefanie Freitag-Pohl, Andrius Jasilionis, Maria Håkansson, L. Anders Svensson, Rebeka Kovačič, Martin Welin, Hildegard Watzlawick, Lei Wang, Josef Altenbuchner, Magdalena Płotka, Anna Karina Kaczorowska, Tadeusz Kaczorowski, Eva Nordberg Karlsson, Salam Al-Karadaghi, Björn Walse, Arnthór Aevarsson, Ehmke Pohl
Published in:
Acta Crystallographica Section D Structural Biology, Issue 75/11, 2019, Page(s) 1028-1039, ISSN 2059-7983
Publisher:
International Union of Crystallography
DOI:
10.1107/s2059798319013330
Author(s):
Daniel Bruce, Emily Cardew, Stefanie Freitag-Pohl, Ehmke Pohl
Published in:
Journal of Visualized Experiments, Issue 144, 2019, ISSN 1940-087X
Publisher:
MYJoVE Corporation
DOI:
10.3791/58666
Author(s):
Simon Roux, Evelien M Adriaenssens, Bas E Dutilh, Eugene V Koonin, Andrew M Kropinski, Mart Krupovic, Jens H Kuhn, Rob Lavigne, J Rodney Brister, Arvind Varsani, Clara Amid, Ramy K Aziz, Seth R Bordenstein, Peer Bork, Mya Breitbart, Guy R Cochrane, Rebecca A Daly, Christelle Desnues, Melissa B Duhaime, Joanne B Emerson, François Enault, Jed A Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L H
Published in:
Nature Biotechnology, Issue 37/1, 2019, Page(s) 29-37, ISSN 1087-0156
Publisher:
Nature Publishing Group
DOI:
10.1038/nbt.4306
Author(s):
Magdalena Plotka, Malgorzata Kapusta, Sebastian Dorawa, Anna-Karina Kaczorowska, Tadeusz Kaczorowski
Published in:
Viruses, Issue 11/7, 2019, Page(s) 657, ISSN 1999-4915
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/v11070657
Author(s):
Ruth-Anne Sandaa, Julia E. Storesund, Emily Olesin, Maria Lund Paulsen, Aud Larsen, Gunnar Bratbak, Jessica Ray
Published in:
Viruses, Issue 10/12, 2018, Page(s) 715, ISSN 1999-4915
Publisher:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/v10120715
Author(s):
Martin Steinegger, Milot Mirdita, Johannes Söding
Published in:
Nature Methods, Issue 16/7, 2019, Page(s) 603-606, ISSN 1548-7091
Publisher:
Nature Publishing Group
DOI:
10.1038/s41592-019-0437-4
Author(s):
Anna A Toymentseva, Josef Altenbuchner
Published in:
FEMS Microbiology Letters, Issue 366/1, 2018, ISSN 1574-6968
Publisher:
Oxford University Press
DOI:
10.1093/femsle/fny284
Author(s):
Diana P. Baquero, Patrizia Contursi, Monica Piochi, Simonetta Bartolucci, Ying Liu, Virginija Cvirkaite-Krupovic, David Prangishvili, Mart Krupovic
Published in:
The ISME Journal, 2020, ISSN 1751-7362
Publisher:
Nature Publishing Group
DOI:
10.1038/s41396-020-0653-z
Author(s):
Fengbin Wang, Ying Liu, Zhangli Su, Tomasz Osinski, Guilherme A. P. de Oliveira, James F. Conway, Stefan Schouten, Mart Krupovic, David Prangishvili, Edward H. Egelman
Published in:
Proceedings of the National Academy of Sciences, Issue 116/45, 2019, Page(s) 22591-22597, ISSN 0027-8424
Publisher:
National Academy of Sciences
DOI:
10.1073/pnas.1908242116
Author(s):
Martin Steinegger and Johannes Soeding
Published in:
Nature Communications, Issue 9(1), 2018, Page(s) 2542
Publisher:
Nature press
DOI:
10.1101/104034
Author(s):
Arnthor Ævarsson
Published in:
La Recherche, 2018, ISSN 0029-5671
Publisher:
Societe d'Editions Scientifiques
Author(s):
Jasilionis A, Akutsu M, Håkansson M, Wang L, Welin M, Kovačič R, Liu Y, Watzlawick H, Ævarsson A, Prangishvili D, Altenbuchner J, Al-Karadaghi S, Nordberg Karlsson E.
Published in:
FEBS Open Bio, Issue 9/S1, 2019, Page(s) 65-431, ISSN 2211-5463
Publisher:
Elsevier BV
DOI:
10.1002/2211-5463.12675
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