Assembly-based discovery of uncharacterized human microbiome members and their tracking across individuals and time

Project Information

DiMeTrack

Grant agreement ID: 707345

DOI 10.3030/707345

Project closed

EC signature date 29 February 2016

Start date 1 October 2016

End date 1 December 2018

Funded under

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Total cost € 180 277,20

EU contribution € 180 277,20

Coordinated by

UNIVERSITA DEGLI STUDI DI TRENTO
Italy

Publications

Peer reviewed articles (10)

Microbial strain-level population structure and genetic diversity from metagenomes

Author(s): Duy Tin Truong, Adrian Tett, Edoardo Pasolli, Curtis Huttenhower, Nicola Segata
Published in: Genome Research, Issue 27/4, 2017, Page(s) 626-638, ISSN 1088-9051
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.216242.116

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Author(s): Adrian Tett, Edoardo Pasolli, Stefania Farina, Duy Tin Truong, Francesco Asnicar, Moreno Zolfo, Francesco Beghini, Federica Armanini, Olivier Jousson, Veronica De Sanctis, Roberto Bertorelli, Giampiero Girolomoni, Mario Cristofolini, Nicola Segata
Published in: npj Biofilms and Microbiomes, Issue 3/1, 2017, ISSN 2055-5008
Publisher: Nature Publishing Group
DOI: 10.1038/s41522-017-0022-5

Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

Author(s): Francesco Beghini, Edoardo Pasolli, Tin Duy Truong, Lorenza Putignani, Simone M Cacciò, Nicola Segata
Published in: The ISME Journal, Issue 11/12, 2017, Page(s) 2848-2863, ISSN 1751-7362
Publisher: Nature Publishing Group
DOI: 10.1038/ismej.2017.139

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi , Isolated from Alpine Lentic Freshwater

Author(s): Federica Pinto, Adrian Tett, Federica Armanini, Francesco Asnicar, Adriano Boscaini, Edoardo Pasolli, Moreno Zolfo, Claudio Donati, Nico Salmaso, Nicola Segata
Published in: Genome Announcements, Issue 5/47, 2017, ISSN 2169-8287
Publisher: American Society for Microbiology
DOI: 10.1128/genomea.01294-17

Accessible, curated metagenomic data through ExperimentHub

Author(s): Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong, Francesco Beghini, Faizan Malik, Marcel Ramos, Jennifer B Dowd, Curtis Huttenhower, Martin Morgan, Nicola Segata, Levi Waldron
Published in: Nature Methods, Issue 14/11, 2017, Page(s) 1023-1024, ISSN 1548-7091
Publisher: Nature Publishing Group
DOI: 10.1038/nmeth.4468

Draft Genome Sequences of Novel Pseudomonas , Flavobacterium , and Sediminibacterium Species Strains from a Freshwater Ecosystem

Author(s): Federica Pinto, Adrian Tett, Federica Armanini, Francesco Asnicar, Adriano Boscaini, Edoardo Pasolli, Moreno Zolfo, Claudio Donati, Nico Salmaso, Nicola Segata
Published in: Genome Announcements, Issue 6/5, 2018, ISSN 2169-8287
Publisher: American Society for Microbiology
DOI: 10.1128/genomea.00009-18

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Author(s): Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Dan
Published in: Cell Host & Microbe, Issue 24/1, 2018, Page(s) 133-145.e5, ISSN 1931-3128
Publisher: Cell Press
DOI: 10.1016/j.chom.2018.06.005

Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital

Author(s): Serena Manara, Edoardo Pasolli, Daniela Dolce, Novella Ravenni, Silvia Campana, Federica Armanini, Francesco Asnicar, Alessio Mengoni, Luisa Galli, Carlotta Montagnani, Elisabetta Venturini, Omar Rota-Stabelli, Guido Grandi, Giovanni Taccetti, Nicola Segata
Published in: Genome Medicine, Issue 10/1, 2018, ISSN 1756-994X
Publisher: BioMed Central
DOI: 10.1186/s13073-018-0593-7

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Author(s): Edoardo Pasolli, Francesco Asnicar, Serena Manara, Moreno Zolfo, Nicolai Karcher, Federica Armanini, Francesco Beghini, Paolo Manghi, Adrian Tett, Paolo Ghensi, Maria Carmen Collado, Benjamin L. Rice, Casey DuLong, Xochitl C. Morgan, Christopher D. Golden, Christopher Quince, Curtis Huttenhower, Nicola Segata
Published in: Cell, Issue 176/3, 2019, Page(s) 649-662.e20, ISSN 0092-8674
Publisher: Cell Press
DOI: 10.1016/j.cell.2019.01.001

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Author(s): Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Jakob Wirbel,
Published in: Nature Medicine, Issue 25/4, 2019, Page(s) 667-678, ISSN 1078-8956
Publisher: Nature Publishing Group
DOI: 10.1038/s41591-019-0405-7