Assembly-based discovery of uncharacterized human microbiome members and their tracking across individuals and time

Información del proyecto

DiMeTrack

Identificador del acuerdo de subvención: 707345

DOI 10.3030/707345

Proyecto cerrado

Fecha de la firma de la CE 29 Febrero 2016

Fecha de inicio 1 Octubre 2016

Fecha de finalización 1 Diciembre 2018

Financiado con arreglo a

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Coste total € 180 277,20

Aportación de la UE € 180 277,20

Coordinado por

UNIVERSITA DEGLI STUDI DI TRENTO
Italy

Publicaciones

Peer reviewed articles (10)

Microbial strain-level population structure and genetic diversity from metagenomes

Autores: Duy Tin Truong, Adrian Tett, Edoardo Pasolli, Curtis Huttenhower, Nicola Segata
Publicado en: Genome Research, Edición 27/4, 2017, Página(s) 626-638, ISSN 1088-9051
Editor: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.216242.116

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Autores: Adrian Tett, Edoardo Pasolli, Stefania Farina, Duy Tin Truong, Francesco Asnicar, Moreno Zolfo, Francesco Beghini, Federica Armanini, Olivier Jousson, Veronica De Sanctis, Roberto Bertorelli, Giampiero Girolomoni, Mario Cristofolini, Nicola Segata
Publicado en: npj Biofilms and Microbiomes, Edición 3/1, 2017, ISSN 2055-5008
Editor: Nature Publishing Group
DOI: 10.1038/s41522-017-0022-5

Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

Autores: Francesco Beghini, Edoardo Pasolli, Tin Duy Truong, Lorenza Putignani, Simone M Cacciò, Nicola Segata
Publicado en: The ISME Journal, Edición 11/12, 2017, Página(s) 2848-2863, ISSN 1751-7362
Editor: Nature Publishing Group
DOI: 10.1038/ismej.2017.139

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi , Isolated from Alpine Lentic Freshwater

Autores: Federica Pinto, Adrian Tett, Federica Armanini, Francesco Asnicar, Adriano Boscaini, Edoardo Pasolli, Moreno Zolfo, Claudio Donati, Nico Salmaso, Nicola Segata
Publicado en: Genome Announcements, Edición 5/47, 2017, ISSN 2169-8287
Editor: American Society for Microbiology
DOI: 10.1128/genomea.01294-17

Accessible, curated metagenomic data through ExperimentHub

Autores: Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong, Francesco Beghini, Faizan Malik, Marcel Ramos, Jennifer B Dowd, Curtis Huttenhower, Martin Morgan, Nicola Segata, Levi Waldron
Publicado en: Nature Methods, Edición 14/11, 2017, Página(s) 1023-1024, ISSN 1548-7091
Editor: Nature Publishing Group
DOI: 10.1038/nmeth.4468

Draft Genome Sequences of Novel Pseudomonas , Flavobacterium , and Sediminibacterium Species Strains from a Freshwater Ecosystem

Autores: Federica Pinto, Adrian Tett, Federica Armanini, Francesco Asnicar, Adriano Boscaini, Edoardo Pasolli, Moreno Zolfo, Claudio Donati, Nico Salmaso, Nicola Segata
Publicado en: Genome Announcements, Edición 6/5, 2018, ISSN 2169-8287
Editor: American Society for Microbiology
DOI: 10.1128/genomea.00009-18

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

Autores: Pamela Ferretti, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Valentina Gorfer, Sabina Fedi, Federica Armanini, Duy Tin Truong, Serena Manara, Moreno Zolfo, Francesco Beghini, Roberto Bertorelli, Veronica De Sanctis, Ilaria Bariletti, Rosarita Canto, Rosanna Clementi, Marina Cologna, Tiziana Crifò, Giuseppina Cusumano, Stefania Gottardi, Claudia Innamorati, Caterina Masè, Daniela Postai, Dan
Publicado en: Cell Host & Microbe, Edición 24/1, 2018, Página(s) 133-145.e5, ISSN 1931-3128
Editor: Cell Press
DOI: 10.1016/j.chom.2018.06.005

Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital

Autores: Serena Manara, Edoardo Pasolli, Daniela Dolce, Novella Ravenni, Silvia Campana, Federica Armanini, Francesco Asnicar, Alessio Mengoni, Luisa Galli, Carlotta Montagnani, Elisabetta Venturini, Omar Rota-Stabelli, Guido Grandi, Giovanni Taccetti, Nicola Segata
Publicado en: Genome Medicine, Edición 10/1, 2018, ISSN 1756-994X
Editor: BioMed Central
DOI: 10.1186/s13073-018-0593-7

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

Autores: Edoardo Pasolli, Francesco Asnicar, Serena Manara, Moreno Zolfo, Nicolai Karcher, Federica Armanini, Francesco Beghini, Paolo Manghi, Adrian Tett, Paolo Ghensi, Maria Carmen Collado, Benjamin L. Rice, Casey DuLong, Xochitl C. Morgan, Christopher D. Golden, Christopher Quince, Curtis Huttenhower, Nicola Segata
Publicado en: Cell, Edición 176/3, 2019, Página(s) 649-662.e20, ISSN 0092-8674
Editor: Cell Press
DOI: 10.1016/j.cell.2019.01.001

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Autores: Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Satoshi Shiba, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Jakob Wirbel,
Publicado en: Nature Medicine, Edición 25/4, 2019, Página(s) 667-678, ISSN 1078-8956
Editor: Nature Publishing Group
DOI: 10.1038/s41591-019-0405-7