circular RNA Biology Training Network: from biogenesis to biomarkers

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Organization, execution and evaluation of training events completed

Organization execution and evaluation of training events completed

ESR'S thesis submitted

ESRS thesis submitted

Recruitment of 15 ESRs

Full set of event reports and publication list
Dissemination Toolkit

Project Website

Publications

Widespread occurrence of circular RNA in eukaryotes

Auteurs: Irene Bozzoni
Publié dans: Nature Reviews Genetics, Numéro 22/9, 2021, Page(s) 550-551, ISSN 1471-0056
Éditeur: Nature Publishing Group
DOI: 10.1038/s41576-021-00375-3

The RNA-binding protein SFPQ preserves long-intron splicing and regulates circRNA biogenesis in mammals

Auteurs: Lotte Victoria Winther Stagsted, Eoghan Thomas O'Leary, Karoline Kragh Ebbesen, Thomas Birkballe Hansen
Publié dans: eLife, Numéro 10, 2021, ISSN 2050-084X
Éditeur: eLife Sciences Publications
DOI: 10.7554/elife.63088

Linking the association between circRNAs and Alzheimer’s disease progression by multi-tissue circular RNA characterization

Auteurs: IJu Lo, Jamie Hill, Bjarni J. Vilhjálmsson, Jørgen Kjems
Publié dans: RNA Biology, Numéro 17/12, 2020, Page(s) 1789-1797, ISSN 1547-6286
Éditeur: Landes Bioscience
DOI: 10.1080/15476286.2020.1783487

High-throughput RNA sequencing from paired lesional- and non-lesional skin reveals major alterations in the psoriasis circRNAome

Auteurs: Liviu-Ionut Moldovan, Thomas Birkballe Hansen, Morten Trillingsgaard Venø, Trine Line Hauge Okholm, Thomas Levin Andersen, Henrik Hager, Lars Iversen, Jørgen Kjems, Claus Johansen, Lasse Sommer Kristensen
Publié dans: BMC Medical Genomics, Numéro 12/1, 2019, Page(s) 1-17, ISSN 1755-8794
Éditeur: BioMed Central
DOI: 10.1186/s12920-019-0616-2

Past, present, and future of circ RNA s

Auteurs: Ines Lucia Patop, Stas Wüst, Sebastian Kadener
Publié dans: The EMBO Journal, Numéro 38/16, 2019, Page(s) 1-13, ISSN 0261-4189
Éditeur: Nature Publishing Group
DOI: 10.15252/embj.2018100836

Long non‐coding RNAs in motor neuron development and disease

Auteurs: Vamshidhar R. Vangoor, Andreia Gomes‐Duarte, R. Jeroen Pasterkamp
Publié dans: Journal of Neurochemistry, Numéro 156/6, 2021, Page(s) 777-801, ISSN 0022-3042
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/jnc.15198

Circular RNAs in cell differentiation and development

Auteurs: Gaia Di Timoteo, Francesca Rossi, Irene Bozzoni
Publié dans: Development, Numéro 147/16, 2020, ISSN 0950-1991
Éditeur: The Company of Biologists Ltd.
DOI: 10.1242/dev.182725

An in vivo strategy for knockdown of circular RNAs

Auteurs: Nagarjuna Reddy Pamudurti, Ines Lucia Patop, Aishwarya Krishnamoorthy, Reut Ashwal-Fluss, Osnat Bartok, Sebastian Kadener
Publié dans: Cell Discovery, Numéro 6/1, 2020, Page(s) 11;6:52, ISSN 2056-5968
Éditeur: Springer Nature
DOI: 10.1038/s41421-020-0182-y

A comprehensive analysis of coding and non-coding transcriptomic changes in cutaneous squamous cell carcinoma

Auteurs: Kunal Das Mahapatra, Lorenzo Pasquali, Jonas Nørskov Søndergaard, Jan Lapins, István Balazs Nemeth, Eszter Baltás, Lajos Kemény, Bernhard Homey, Liviu-Ionut Moldovan, Jørgen Kjems, Claudia Kutter, Enikö Sonkoly, Lasse Sommer Kristensen, Andor Pivarcsi
Publié dans: Scientific Reports, Numéro 10/1, 2020, Page(s) 1-12, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-020-59660-6

Design and application of circular RNAs with protein-sponge function

Auteurs: Silke Schreiner, Anna Didio, Lee-Hsueh Hung, Albrecht Bindereif
Publié dans: Nucleic Acids Research, Numéro 48/21, 2020, Page(s) 12326-12335, ISSN 0305-1048
Éditeur: Oxford University Press
DOI: 10.1093/nar/gkaa1085

Characterization of circular RNA transcriptomes in psoriasis and atopic dermatitis reveals disease‐specific expression profiles

Auteurs: Liviu I. Moldovan, Lam C. Tsoi, Uppala Ranjitha, Henrik Hager, Stephen Weidinger, Johann E. Gudjonsson, Jørgen Kjems, Lasse S. Kristensen
Publié dans: Experimental Dermatology, Numéro 30/8, 2021, Page(s) 1187-1196, ISSN 0906-6705
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/exd.14227

Methods to study circRNA-protein interactions

Auteurs: Corinna J. Ulshöfer, Christina Pfafenrot, Albrecht Bindereif, Tim Schneider
Publié dans: Methods, Numéro Volume 195, 2021, ISSN 1046-2023
Éditeur: Academic Press
DOI: 10.1016/j.ymeth.2021.04.014

Remotely Produced and Axon-Derived Netrin-1 Instructs GABAergic Neuron Migration and Dopaminergic Substantia Nigra Development

Auteurs: Sara Brignani, Divya D.A. Raj, Ewoud R.E. Schmidt, Özge Düdükcü, Youri Adolfs, Anna A. De Ruiter, Mateja Rybiczka-Tesulov, Marieke G. Verhagen, Christiaan van der Meer, Mark H. Broekhoven, Juan A. Moreno-Bravo, Laurens M. Grossouw, Emilie Dumontier, Jean-François Cloutier, Alain Chédotal, R. Jeroen Pasterkamp
Publié dans: Neuron, Numéro 107/4, 2020, Page(s) 684-702.e9, ISSN 0896-6273
Éditeur: Cell Press
DOI: 10.1016/j.neuron.2020.05.037

circRNAs in Cancer

Auteurs: Ines Lucia Patop, Sebastian Kadener
Publié dans: Current Opinion in Genetics & Development, Numéro 48, 2018, Page(s) 121-127, ISSN 0959-437X
Éditeur: Elsevier BV
DOI: 10.1016/j.gde.2017.11.007

Single-Cell Transcriptomics Characterizes Cell Types in the Subventricular Zone and Uncovers Molecular Defects Impairing Adult Neurogenesis

Auteurs: Vera Zywitza, Aristotelis Misios, Lena Bunatyan, Thomas E. Willnow, Nikolaus Rajewsky
Publié dans: Cell Reports, Numéro 25/9, 2018, Page(s) 2457-2469.e8, ISSN 2211-1247
Éditeur: Cell Press
DOI: 10.1016/j.celrep.2018.11.003

CircVAMP3: A circRNA with a Role in Alveolar Rhabdomyosarcoma Cell Cycle Progression

Auteurs: Francesca Rossi, Alvaro Centrón-Broco, Dario Dattilo, Gaia Di Timoteo, Marco Guarnacci, Alessio Colantoni, Manuel Beltran Nebot, Irene Bozzoni
Publié dans: Genes, Numéro 12/7, 2021, Page(s) 985, ISSN 2073-4425
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/genes12070985

Modulation of circRNA Metabolism by m6A Modification

Auteurs: Gaia Di Timoteo, Dario Dattilo, Alvaro Centrón-Broco, Alessio Colantoni, Marco Guarnacci, Francesca Rossi, Danny Incarnato, Salvatore Oliviero, Alessandro Fatica, Mariangela Morlando, Irene Bozzoni
Publié dans: Cell Reports, Numéro 31/6, 2020, Page(s) 107641, ISSN 2211-1247
Éditeur: Cell Press
DOI: 10.1016/j.celrep.2020.107641

Circ-Hdgfrp3 shuttles along neurites and is trapped in aggregates formed by ALS-associated mutant FUS

Auteurs: Eleonora D’Ambra, Tiziana Santini, Erika Vitiello, Sara D’Uva, Valentina Silenzi, Mariangela Morlando, Irene Bozzoni
Publié dans: iScience, 2021, Page(s) 103504, ISSN 2589-0042
Éditeur: Cell Press
DOI: 10.1016/j.isci.2021.103504

Enrichment of Circular RNA Expression Deregulation at the Transition to Recurrent Spontaneous Seizures in Experimental Temporal Lobe Epilepsy

Auteurs: Andreia Gomes-Duarte, Sebastian Bauer, Morten T. Venø, Braxton A. Norwood, David C. Henshall, Jørgen Kjems, Felix Rosenow, Vamshidhar R. Vangoor, R. Jeroen Pasterkamp
Publié dans: Frontiers in Genetics, Numéro 12, 2021, Page(s) 1-20, ISSN 1664-8021
Éditeur: Frontiers Media
DOI: 10.3389/fgene.2021.627907

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