During the project the associate has developed many protocols and prototype implementations for automated alignment and calibration of the C-Trap. This has resulted in more robust and easier operation of the C-Trap. Most of the developments have rolled directly into our new Bluelake C-Trap control software platform. The project has lead to: easier alignment of force detection optics, better spatial correlation between trap position and fluorescence images, easier force calibration, easier flow cell navigation, more accurate power control, automated alignment monitoring. Next to automated alignment and calibration the project has also focussed on automation of experiments. We now have the ability to perform a full single molecule experiment consisting of catching a molecule, aligning the fluorescence imaging, stretching to desired force and recording fluorescence images without user intervention. The feedback we received from customers on the improved ease of use and the automation capabilities has been extremely positive.