The genetic basis of the convergent evolution of fungal multicellularity

Información del proyecto

Multicellularity

Identificador del acuerdo de subvención: 758161

DOI

10.3030/758161

Proyecto cerrado

Fecha de la firma de la CE 24 Octubre 2017

Fecha de inicio 1 Enero 2018

Fecha de finalización 30 Junio 2023

Financiado con arreglo a

• EXCELLENT SCIENCE - European Research Council (ERC)

Coste total

€ 1 486 500,00

Aportación de la UE

€ 1 486 500,00

Coordinado por

HUN-REN SZEGEDI BIOLOGIAI KUTATOKOZPONT
Hungary

CORDIS proporciona enlaces a los documentos públicos y las publicaciones de los proyectos de los programas marco HORIZONTE.

Los enlaces a los documentos y las publicaciones de los proyectos del Séptimo Programa Marco, así como los enlaces a algunos tipos de resultados específicos, como conjuntos de datos y «software», se obtienen dinámicamente de OpenAIRE .

Publicaciones

Conference proceedings (17)

Revealing tissue-specific developmental trajectories in fruiting bodies of Coprinopsis cinerea by single-cell RNA sequencing.

Autores: Varga T., Bálint B., Bense V., Nagy GL
Publicado en: 2020
Editor: 15th European Conference on Fungal Genetics

Fungal multicellularity and fruiting body development, from a transcriptomic and genomic perspective.

Autores: László G Nagy
Publicado en: 2020
Editor: Israel Molecular Mycology Meeting

Development of Single and Multitargeted Gene Deletion Methods in the Inky-Cap Fungus Coprinopsis cinerea

Autores: Csernetics A., Viragh M., Bense V., Trenka V., Pal P., Nagy GL.
Publicado en: 2020
Editor: 15th European Conference on Fungal Genetics

Towards understanding conserved gene regulatory networks in fungi: an update on the FUNCODE Project.

Autores: László G Nagy
Publicado en: 2021
Editor: Botany 2021

Allele specific expression during fruiting body formation in Pleurotus ostreatus.

Autores: Zsolt Merényi, Máté Virágh, Emile Gluck-Thaler, Jason C. Slot, Brigitta Kiss, Torda Varga, András Geösel, Botond Hegedüs, Balázs Bálint, László G. Nagy
Publicado en: 2022
Editor: 31st Fungal Genetics Conference

RNA-seq of cell populations during the early development of Coprinopsis cinerea reveals intensive reprogramming of hyphal growth patterns.

Autores: Varga T., Bálint B., Bense V., Nagy GL.
Publicado en: 2020
Editor: Meeting of the Mycological Society of America

Taxonomic vs. genomic fungi: large turnover of protistan genetic heritage in the fungal kingdom.

Autores: László G. Nagy, Zsolt Merényi
Publicado en: 2022
Editor: Jacques Monod Conferences: The origin of Metazoans

FGC Evolution repeats itself in fungal morphogenetic transitions - in search of mechanisms of convergent evolution

Autores: László G Nagy
Publicado en: 2022
Editor: 31st Fungal Genetics Conference

A macro-evolutionary perspective on long-distance mass transport in fungi.

Autores: Varga T., Bense V., Nagy GL.
Publicado en: 2020
Editor: 15th European Conference on Fungal Genetics

Omics’ approaches of fruiting body development for improving commercial mushroom strains

Autores: László G. Nagy
Publicado en: 2021
Editor: ISMS e-Congress

Unmatched level of molecular convergence among deeply divergent complex multicellular fungi.

Autores: Merenyi Zs., Prasanna AN., Wang Z., Kovacs K., Hegedus B., Balint B., Papp B., Townsend JP., Nagy GL
Publicado en: EVOLUTION of COMPLEX LIFE, Edición 15-17. May 2019., 2019
Editor: Georgia Tech

The Origins of Complex Multicellularity in Agarico- and Pezizomycotina.

Autores: Merenyi Zs., Prasanna AN., Almasi E., Krizsan K., Nagy GL.
Publicado en: A Magyar Mikrobiológiai Társaság 2018. évi Nagygyűlése és a XIII. Fermentációs Kollokvium, Edición 17-19. October 2018, 2018
Editor: Magyar Mikrobiológiai Társaság

Comparative genomics reveals the origin of hyphal morphogenesis and fungal multicellularity.

Autores: Kiss E., Hegedus B., Varga T., Merenyi Zs., Balint B., Koszo T., Krizsan K., Prasanna AN., Nagy GL.
Publicado en: 30th Fungal Genetics Conference, Edición 12-17. March. 2019., 2019, Página(s) p.15.
Editor: Genetics Society of America

Evolutionary analysis of thousands of genomes with COMPARE1K+.

Autores: Balint B., Merenyi Zs., Varga T., Grigoriev IV., Nagy GL.
Publicado en: NeLLi – Symposium on New Lineages of Life, Edición 2-3. April 2019., 2019
Editor: DOE Joist Genome Institue

COMPARE1K+, a bioinformatic pipeline and an R package to analyse the evolution of thousands of genomes

Autores: Varga T., Balint B., Merenyi Zs., Grigoriev IV., Nagy GL.
Publicado en: Hungarian Molecular Life Science, Edición 29-31. March. 2019., 2019, Página(s) p.245.
Editor: MBKE, MAGE

Understanding the evolution of mushroom-forming fungi: macro-evolutionary analyses of a 5300-species phylogeny of Agaricomycetes.

Autores: Varga T., Krizsan K., Szarkandi GJ, Dima B., Kiss B., Foldi Cs., Sanchez-Garcia M., Sanchez-Ramirez S., Szollosi GJ., M., Hibbett DS., Vagvolgyi Cs., Papp T., Nagy GL.
Publicado en: 14th European Conference on Fungal Genetics, Edición 25-28. February. 2018., 2018, Página(s) p.104.
Editor: ECFG14

Patterns of genome evolution underlying differential wood-decay mechanisms in Polyporales.

Autores: Virágh M., Merényi, Zs. , Bálint, B., Hage, H., Miyauchi, S., Favel S., Miettinen O., Grigoriev, IV., Rosso, MN., Martin F., Nagy GL.
Publicado en: 2019
Editor: Asian Mycological Congress

Peer reviewed articles (19)

Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

Autores: Marisol Sánchez-García, Martin Ryberg, Faheema Kalsoom Khan, Torda Varga, László G. Nagy, David S. Hibbett
Publicado en: Proceedings of the National Academy of Sciences, Edición 117/51, 2020, Página(s) 32528-32534, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1922539117

Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits

Autores: Zsolt Merényi, Krisztina Krizsán, Neha Sahu, Xiao-Bin Liu, Balázs Bálint, Jason E. Stajich, Joseph W. Spatafora, László G. Nagy
Publicado en: Nature Ecology and Evolution, 2023, ISSN 2397-334X
Editor: Nature Portfolio
DOI: 10.1038/s41559-023-02095-9

Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

Autores: Éva Almási, Neha Sahu, Krisztina Krizsán, Balázs Bálint, Gábor M. Kovács, Brigitta Kiss, Judit Cseklye, Elodie Drula, Bernard Henrissat, István Nagy, Mansi Chovatia, Catherine Adam, Kurt LaButti, Anna Lipzen, Robert Riley, Igor V. Grigoriev, László G. Nagy
Publicado en: New Phytologist, Edición 224/2, 2019, Página(s) 902-915, ISSN 0028-646X
Editor: Blackwell Publishing Inc.
DOI: 10.1111/nph.16032

Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes

Autores: László G. Nagy, Peter Jan Vonk, Markus Künzler, Csenge Földi, Máté Virágh, Robin A. Ohm, Florian Hennicke, Balázs Bálint, Árpád Csernetics, Botond Hegedüs, Zhihao Hou, Xiao-Bin Liu, Shen Nan, Manish Pareek, Neha Sahu, Benedek Szathmári, Torda Varga, Hongli Wu, Xiao Yang, Zsolt Merényi
Publicado en: Studies in Mycology, 2022, ISSN 0166-0616
Editor: Centraal Bureau voor Schimmelculturals
DOI: 10.1101/2021.12.09.471732

Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

Autores: Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis M. Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn L. Ford, Gary D. Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt LaButti, Máté Virágh, Maxim Koria
Publicado en: Nature Microbiology, Edición 8, 2023, Página(s) pages 1668–1681, ISSN 2058-5276
Editor: Springer Nature
DOI: 10.1038/s41564-023-01448-1

Gene age shapes the transcriptional landscape of sexual morphogenesis in mushroom-forming fungi (Agaricomycetes)

Autores: Zsolt Merényi, Máté Virágh, Emile Gluck-Thaler, Jason C Slot, Brigitta Kiss, Torda Varga, András Geösel, Botond Hegedüs, Balázs Bálint, László G Nagy
Publicado en: eLife, 2022, ISSN 2050-084X
Editor: eLife Sciences Publications
DOI: 10.7554/elife.71348

Evolutionary Morphogenesis of Sexual Fruiting Bodies in Basidiomycota: Toward a New Evo-Devo Synthesis

Autores: Máté Virágh, Zsolt Merényi, Árpád Csernetics, Csenge Földi, Neha Sahu, Xiao-Bin Liu, David S. Hibbett, László G. Nagy
Publicado en: Microbiology and Molecular Biology Reviews, 2021, ISSN 1092-2172
Editor: American Society for Microbiology
DOI: 10.1128/mmbr.00019-21

Radiation of mushroom-forming fungi correlates with novel modes of protecting sexual fruiting bodies

Autores: Torda Varga, Csenge Földi, Viktória Bense, László G. Nagy
Publicado en: Fungal Biology, 2022, ISSN 1878-6146
Editor: Elsevier BV
DOI: 10.1016/j.funbio.2022.07.001

Mycology: Rediscovery of a lost model fungus highlights the origin of mycorrhizal symbioses

Autores: László G.Nagy, Gábor M.Kovács
Publicado en: Current Biology, 2021, ISSN 0960-9822
Editor: Cell Press
DOI: 10.1016/j.cub.2021.02.006

Hallmarks of Basidiomycete Soft- and White-Rot in Wood-Decay -Omics Data of Two Armillaria Species

Autores: Neha Sahu, Zsolt Merényi, Balázs Bálint, Brigitta Kiss, György Sipos, Rebecca A. Owens, László G. Nagy
Publicado en: Microorganisms, Edición 9/1, 2021, Página(s) 149, ISSN 2076-2607
Editor: MDPI
DOI: 10.3390/microorganisms9010149

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

Autores: Krisztina Krizsán, Éva Almási, Zsolt Merényi, Neha Sahu, Máté Virágh, Tamás Kószó, Stephen Mondo, Brigitta Kiss, Balázs Bálint, Ursula Kües, Kerrie Barry, Judit Cseklye, Botond Hegedüs, Bernard Henrissat, Jenifer Johnson, Anna Lipzen, Robin A. Ohm, István Nagy, Jasmyn Pangilinan, Juying Yan, Yi Xiong, Igor V. Grigoriev, David S. Hibbett, László G. Nagy
Publicado en: Proceedings of the National Academy of Sciences, Edición 116/15, 2019, Página(s) 7409-7418, ISSN 0027-8424
Editor: National Academy of Sciences
DOI: 10.1073/pnas.1817822116

Comparative genomics reveals the origin of fungal hyphae and multicellularity

Autores: Enikő Kiss, Botond Hegedüs, Máté Virágh, Torda Varga, Zsolt Merényi, Tamás Kószó, Balázs Bálint, Arun N. Prasanna, Krisztina Krizsán, Sándor Kocsubé, Meritxell Riquelme, Norio Takeshita, László G. Nagy
Publicado en: Nature Communications, Edición 10/1, 2019, ISSN 2041-1723
Editor: Nature Publishing Group
DOI: 10.1038/s41467-019-12085-w

Many roads to convergence

Autores: Nagy, GL.
Publicado en: Science, Edición 361/6398, 2018, Página(s) 125-126, ISSN 0036-8075
Editor: American Association for the Advancement of Science
DOI: 10.1126/science.aau2409

Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi

Autores: Zsolt Merényi, Arun N Prasanna, Zheng Wang, Károly Kovács, Botond Hegedüs, Balázs Bálint, Balázs Papp, Jeffrey P Townsend, László G Nagy
Publicado en: Molecular Biology and Evolution, 2020, ISSN 0737-4038
Editor: Oxford University Press
DOI: 10.1093/molbev/msaa077

Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing

Autores: László G Nagy, Zsolt Merényi, Botond Hegedüs, Balázs Bálint
Publicado en: Nucleic Acids Research, Edición 48/5, 2020, Página(s) 2209-2219, ISSN 0305-1048
Editor: Oxford University Press
DOI: 10.1093/nar/gkz1241

Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships

Autores: Arun N Prasanna, Daniel Gerber, Teeratas Kijpornyongpan, M Catherine Aime, Vinson P Doyle, Laszlo G Nagy
Publicado en: Systematic Biology, Edición 69/1, 2019, Página(s) 17-37, ISSN 1063-5157
Editor: Taylor & Francis
DOI: 10.1093/sysbio/syz029

Megaphylogeny resolves global patterns of mushroom evolution

Autores: Torda Varga, Krisztina Krizsán, Csenge Földi, Bálint Dima, Marisol Sánchez-García, Santiago Sánchez-Ramírez, Gergely J. Szöllősi, János G. Szarkándi, Viktor Papp, László Albert, William Andreopoulos, Claudio Angelini, Vladimír Antonín, Kerrie W. Barry, Neale L. Bougher, Peter Buchanan, Bart Buyck, Viktória Bense, Pam Catcheside, Mansi Chovatia, Jerry Cooper, Wolfgang Dämon, Dennis
Publicado en: Nature Ecology & Evolution, Edición 3/4, 2019, Página(s) 668-678, ISSN 2397-334X
Editor: Springer Nature
DOI: 10.1038/s41559-019-0834-1

Preassembled Cas9 Ribonucleoprotein-Mediated Gene Deletion Identifies the Carbon Catabolite Repressor and Its Target Genes in Coprinopsis cinerea

Autores: Manish Pareek, Botond Hegedüs, Zhihao Hou, Árpád Csernetics, Hongli Wu, Máté Virágh, Neha Sahu, Xiao-Bin Liu, László Nagy
Publicado en: Applied and Environmental Microbiology, 2022, ISSN 0099-2240
Editor: American Society for Microbiology
DOI: 10.1128/aem.00940-22

Fungi took a unique evolutionary route to multicellularity: Seven key challenges for fungal multicellular life

Autores: László G. Nagy, Torda Varga, Árpád Csernetics, Máté Virágh
Publicado en: Fungal Biology Reviews, Edición 34/4, 2020, Página(s) 151-169, ISSN 1749-4613
Editor: Elsevier BV
DOI: 10.1016/j.fbr.2020.07.002