The genetic basis of the convergent evolution of fungal multicellularity

Informazioni relative al progetto

Multicellularity

ID dell’accordo di sovvenzione: 758161

DOI

10.3030/758161

Progetto chiuso

Data della firma CE 24 Ottobre 2017

Data di avvio 1 Gennaio 2018

Data di completamento 30 Giugno 2023

Finanziato da

• EXCELLENT SCIENCE - European Research Council (ERC)

Costo totale

€ 1 486 500,00

Contributo UE

€ 1 486 500,00

Coordinato da

HUN-REN SZEGEDI BIOLOGIAI KUTATOKOZPONT
Hungary

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I link ai risultati e alle pubblicazioni dei progetti del 7° PQ, così come i link ad alcuni tipi di risultati specifici come dataset e software, sono recuperati dinamicamente da .OpenAIRE .

Pubblicazioni

Conference proceedings (17)

Revealing tissue-specific developmental trajectories in fruiting bodies of Coprinopsis cinerea by single-cell RNA sequencing.

Autori: Varga T., Bálint B., Bense V., Nagy GL
Pubblicato in: 2020
Editore: 15th European Conference on Fungal Genetics

Fungal multicellularity and fruiting body development, from a transcriptomic and genomic perspective.

Autori: László G Nagy
Pubblicato in: 2020
Editore: Israel Molecular Mycology Meeting

Development of Single and Multitargeted Gene Deletion Methods in the Inky-Cap Fungus Coprinopsis cinerea

Autori: Csernetics A., Viragh M., Bense V., Trenka V., Pal P., Nagy GL.
Pubblicato in: 2020
Editore: 15th European Conference on Fungal Genetics

Towards understanding conserved gene regulatory networks in fungi: an update on the FUNCODE Project.

Autori: László G Nagy
Pubblicato in: 2021
Editore: Botany 2021

Allele specific expression during fruiting body formation in Pleurotus ostreatus.

Autori: Zsolt Merényi, Máté Virágh, Emile Gluck-Thaler, Jason C. Slot, Brigitta Kiss, Torda Varga, András Geösel, Botond Hegedüs, Balázs Bálint, László G. Nagy
Pubblicato in: 2022
Editore: 31st Fungal Genetics Conference

RNA-seq of cell populations during the early development of Coprinopsis cinerea reveals intensive reprogramming of hyphal growth patterns.

Autori: Varga T., Bálint B., Bense V., Nagy GL.
Pubblicato in: 2020
Editore: Meeting of the Mycological Society of America

Taxonomic vs. genomic fungi: large turnover of protistan genetic heritage in the fungal kingdom.

Autori: László G. Nagy, Zsolt Merényi
Pubblicato in: 2022
Editore: Jacques Monod Conferences: The origin of Metazoans

FGC Evolution repeats itself in fungal morphogenetic transitions - in search of mechanisms of convergent evolution

Autori: László G Nagy
Pubblicato in: 2022
Editore: 31st Fungal Genetics Conference

A macro-evolutionary perspective on long-distance mass transport in fungi.

Autori: Varga T., Bense V., Nagy GL.
Pubblicato in: 2020
Editore: 15th European Conference on Fungal Genetics

Omics’ approaches of fruiting body development for improving commercial mushroom strains

Autori: László G. Nagy
Pubblicato in: 2021
Editore: ISMS e-Congress

Unmatched level of molecular convergence among deeply divergent complex multicellular fungi.

Autori: Merenyi Zs., Prasanna AN., Wang Z., Kovacs K., Hegedus B., Balint B., Papp B., Townsend JP., Nagy GL
Pubblicato in: EVOLUTION of COMPLEX LIFE, Numero 15-17. May 2019., 2019
Editore: Georgia Tech

The Origins of Complex Multicellularity in Agarico- and Pezizomycotina.

Autori: Merenyi Zs., Prasanna AN., Almasi E., Krizsan K., Nagy GL.
Pubblicato in: A Magyar Mikrobiológiai Társaság 2018. évi Nagygyűlése és a XIII. Fermentációs Kollokvium, Numero 17-19. October 2018, 2018
Editore: Magyar Mikrobiológiai Társaság

Comparative genomics reveals the origin of hyphal morphogenesis and fungal multicellularity.

Autori: Kiss E., Hegedus B., Varga T., Merenyi Zs., Balint B., Koszo T., Krizsan K., Prasanna AN., Nagy GL.
Pubblicato in: 30th Fungal Genetics Conference, Numero 12-17. March. 2019., 2019, Pagina/e p.15.
Editore: Genetics Society of America

Evolutionary analysis of thousands of genomes with COMPARE1K+.

Autori: Balint B., Merenyi Zs., Varga T., Grigoriev IV., Nagy GL.
Pubblicato in: NeLLi – Symposium on New Lineages of Life, Numero 2-3. April 2019., 2019
Editore: DOE Joist Genome Institue

COMPARE1K+, a bioinformatic pipeline and an R package to analyse the evolution of thousands of genomes

Autori: Varga T., Balint B., Merenyi Zs., Grigoriev IV., Nagy GL.
Pubblicato in: Hungarian Molecular Life Science, Numero 29-31. March. 2019., 2019, Pagina/e p.245.
Editore: MBKE, MAGE

Understanding the evolution of mushroom-forming fungi: macro-evolutionary analyses of a 5300-species phylogeny of Agaricomycetes.

Autori: Varga T., Krizsan K., Szarkandi GJ, Dima B., Kiss B., Foldi Cs., Sanchez-Garcia M., Sanchez-Ramirez S., Szollosi GJ., M., Hibbett DS., Vagvolgyi Cs., Papp T., Nagy GL.
Pubblicato in: 14th European Conference on Fungal Genetics, Numero 25-28. February. 2018., 2018, Pagina/e p.104.
Editore: ECFG14

Patterns of genome evolution underlying differential wood-decay mechanisms in Polyporales.

Autori: Virágh M., Merényi, Zs. , Bálint, B., Hage, H., Miyauchi, S., Favel S., Miettinen O., Grigoriev, IV., Rosso, MN., Martin F., Nagy GL.
Pubblicato in: 2019
Editore: Asian Mycological Congress

Peer reviewed articles (19)

Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

Autori: Marisol Sánchez-García, Martin Ryberg, Faheema Kalsoom Khan, Torda Varga, László G. Nagy, David S. Hibbett
Pubblicato in: Proceedings of the National Academy of Sciences, Numero 117/51, 2020, Pagina/e 32528-32534, ISSN 0027-8424
Editore: National Academy of Sciences
DOI: 10.1073/pnas.1922539117

Genomes of fungi and relatives reveal delayed loss of ancestral gene families and evolution of key fungal traits

Autori: Zsolt Merényi, Krisztina Krizsán, Neha Sahu, Xiao-Bin Liu, Balázs Bálint, Jason E. Stajich, Joseph W. Spatafora, László G. Nagy
Pubblicato in: Nature Ecology and Evolution, 2023, ISSN 2397-334X
Editore: Nature Portfolio
DOI: 10.1038/s41559-023-02095-9

Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

Autori: Éva Almási, Neha Sahu, Krisztina Krizsán, Balázs Bálint, Gábor M. Kovács, Brigitta Kiss, Judit Cseklye, Elodie Drula, Bernard Henrissat, István Nagy, Mansi Chovatia, Catherine Adam, Kurt LaButti, Anna Lipzen, Robert Riley, Igor V. Grigoriev, László G. Nagy
Pubblicato in: New Phytologist, Numero 224/2, 2019, Pagina/e 902-915, ISSN 0028-646X
Editore: Blackwell Publishing Inc.
DOI: 10.1111/nph.16032

Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes

Autori: László G. Nagy, Peter Jan Vonk, Markus Künzler, Csenge Földi, Máté Virágh, Robin A. Ohm, Florian Hennicke, Balázs Bálint, Árpád Csernetics, Botond Hegedüs, Zhihao Hou, Xiao-Bin Liu, Shen Nan, Manish Pareek, Neha Sahu, Benedek Szathmári, Torda Varga, Hongli Wu, Xiao Yang, Zsolt Merényi
Pubblicato in: Studies in Mycology, 2022, ISSN 0166-0616
Editore: Centraal Bureau voor Schimmelculturals
DOI: 10.1101/2021.12.09.471732

Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

Autori: Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis M. Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn L. Ford, Gary D. Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt LaButti, Máté Virágh, Maxim Koria
Pubblicato in: Nature Microbiology, Numero 8, 2023, Pagina/e pages 1668–1681, ISSN 2058-5276
Editore: Springer Nature
DOI: 10.1038/s41564-023-01448-1

Gene age shapes the transcriptional landscape of sexual morphogenesis in mushroom-forming fungi (Agaricomycetes)

Autori: Zsolt Merényi, Máté Virágh, Emile Gluck-Thaler, Jason C Slot, Brigitta Kiss, Torda Varga, András Geösel, Botond Hegedüs, Balázs Bálint, László G Nagy
Pubblicato in: eLife, 2022, ISSN 2050-084X
Editore: eLife Sciences Publications
DOI: 10.7554/elife.71348

Evolutionary Morphogenesis of Sexual Fruiting Bodies in Basidiomycota: Toward a New Evo-Devo Synthesis

Autori: Máté Virágh, Zsolt Merényi, Árpád Csernetics, Csenge Földi, Neha Sahu, Xiao-Bin Liu, David S. Hibbett, László G. Nagy
Pubblicato in: Microbiology and Molecular Biology Reviews, 2021, ISSN 1092-2172
Editore: American Society for Microbiology
DOI: 10.1128/mmbr.00019-21

Radiation of mushroom-forming fungi correlates with novel modes of protecting sexual fruiting bodies

Autori: Torda Varga, Csenge Földi, Viktória Bense, László G. Nagy
Pubblicato in: Fungal Biology, 2022, ISSN 1878-6146
Editore: Elsevier BV
DOI: 10.1016/j.funbio.2022.07.001

Mycology: Rediscovery of a lost model fungus highlights the origin of mycorrhizal symbioses

Autori: László G.Nagy, Gábor M.Kovács
Pubblicato in: Current Biology, 2021, ISSN 0960-9822
Editore: Cell Press
DOI: 10.1016/j.cub.2021.02.006

Hallmarks of Basidiomycete Soft- and White-Rot in Wood-Decay -Omics Data of Two Armillaria Species

Autori: Neha Sahu, Zsolt Merényi, Balázs Bálint, Brigitta Kiss, György Sipos, Rebecca A. Owens, László G. Nagy
Pubblicato in: Microorganisms, Numero 9/1, 2021, Pagina/e 149, ISSN 2076-2607
Editore: MDPI
DOI: 10.3390/microorganisms9010149

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

Autori: Krisztina Krizsán, Éva Almási, Zsolt Merényi, Neha Sahu, Máté Virágh, Tamás Kószó, Stephen Mondo, Brigitta Kiss, Balázs Bálint, Ursula Kües, Kerrie Barry, Judit Cseklye, Botond Hegedüs, Bernard Henrissat, Jenifer Johnson, Anna Lipzen, Robin A. Ohm, István Nagy, Jasmyn Pangilinan, Juying Yan, Yi Xiong, Igor V. Grigoriev, David S. Hibbett, László G. Nagy
Pubblicato in: Proceedings of the National Academy of Sciences, Numero 116/15, 2019, Pagina/e 7409-7418, ISSN 0027-8424
Editore: National Academy of Sciences
DOI: 10.1073/pnas.1817822116

Comparative genomics reveals the origin of fungal hyphae and multicellularity

Autori: Enikő Kiss, Botond Hegedüs, Máté Virágh, Torda Varga, Zsolt Merényi, Tamás Kószó, Balázs Bálint, Arun N. Prasanna, Krisztina Krizsán, Sándor Kocsubé, Meritxell Riquelme, Norio Takeshita, László G. Nagy
Pubblicato in: Nature Communications, Numero 10/1, 2019, ISSN 2041-1723
Editore: Nature Publishing Group
DOI: 10.1038/s41467-019-12085-w

Many roads to convergence

Autori: Nagy, GL.
Pubblicato in: Science, Numero 361/6398, 2018, Pagina/e 125-126, ISSN 0036-8075
Editore: American Association for the Advancement of Science
DOI: 10.1126/science.aau2409

Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi

Autori: Zsolt Merényi, Arun N Prasanna, Zheng Wang, Károly Kovács, Botond Hegedüs, Balázs Bálint, Balázs Papp, Jeffrey P Townsend, László G Nagy
Pubblicato in: Molecular Biology and Evolution, 2020, ISSN 0737-4038
Editore: Oxford University Press
DOI: 10.1093/molbev/msaa077

Novel phylogenetic methods are needed for understanding gene function in the era of mega-scale genome sequencing

Autori: László G Nagy, Zsolt Merényi, Botond Hegedüs, Balázs Bálint
Pubblicato in: Nucleic Acids Research, Numero 48/5, 2020, Pagina/e 2209-2219, ISSN 0305-1048
Editore: Oxford University Press
DOI: 10.1093/nar/gkz1241

Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships

Autori: Arun N Prasanna, Daniel Gerber, Teeratas Kijpornyongpan, M Catherine Aime, Vinson P Doyle, Laszlo G Nagy
Pubblicato in: Systematic Biology, Numero 69/1, 2019, Pagina/e 17-37, ISSN 1063-5157
Editore: Taylor & Francis
DOI: 10.1093/sysbio/syz029

Megaphylogeny resolves global patterns of mushroom evolution

Autori: Torda Varga, Krisztina Krizsán, Csenge Földi, Bálint Dima, Marisol Sánchez-García, Santiago Sánchez-Ramírez, Gergely J. Szöllősi, János G. Szarkándi, Viktor Papp, László Albert, William Andreopoulos, Claudio Angelini, Vladimír Antonín, Kerrie W. Barry, Neale L. Bougher, Peter Buchanan, Bart Buyck, Viktória Bense, Pam Catcheside, Mansi Chovatia, Jerry Cooper, Wolfgang Dämon, Dennis
Pubblicato in: Nature Ecology & Evolution, Numero 3/4, 2019, Pagina/e 668-678, ISSN 2397-334X
Editore: Springer Nature
DOI: 10.1038/s41559-019-0834-1

Preassembled Cas9 Ribonucleoprotein-Mediated Gene Deletion Identifies the Carbon Catabolite Repressor and Its Target Genes in Coprinopsis cinerea

Autori: Manish Pareek, Botond Hegedüs, Zhihao Hou, Árpád Csernetics, Hongli Wu, Máté Virágh, Neha Sahu, Xiao-Bin Liu, László Nagy
Pubblicato in: Applied and Environmental Microbiology, 2022, ISSN 0099-2240
Editore: American Society for Microbiology
DOI: 10.1128/aem.00940-22

Fungi took a unique evolutionary route to multicellularity: Seven key challenges for fungal multicellular life

Autori: László G. Nagy, Torda Varga, Árpád Csernetics, Máté Virágh
Pubblicato in: Fungal Biology Reviews, Numero 34/4, 2020, Pagina/e 151-169, ISSN 1749-4613
Editore: Elsevier BV
DOI: 10.1016/j.fbr.2020.07.002