Building biological computers from bacterial populations

Project Information

SynBioBrain

Grant agreement ID: 770835

DOI 10.3030/770835

Project closed

EC signature date 23 April 2018

Start date 1 May 2018

End date 31 October 2024

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost € 1 998 025,00

EU contribution € 1 998 025,00

Coordinated by

UNIVERSITY COLLEGE LONDON
United Kingdom

Publications

Non-peer reviewed articles (1)

Single strain control of microbial consortia

Author(s): Fedorec AJ, Karkaria BD, Sulu M, Barnes CP
Published in: bioRxiv, 2019, ISSN 0362-4331
Publisher: New York Times Company
DOI: 10.1101/2019.12.23.887331

Peer reviewed articles (6)

From Microbial Communities to Distributed Computing Systems

Author(s): Behzad D. Karkaria, Neythen J. Treloar, Chris P. Barnes, Alex J. H. Fedorec
Published in: Frontiers in Bioengineering and Biotechnology, Issue 8, 2020, ISSN 2296-4185
Publisher: Frontiers Media S.A.
DOI: 10.3389/fbioe.2020.00834

FlopR: An Open Source Software Package for Calibration and Normalization of Plate Reader and Flow Cytometry Data

Author(s): Alex J. H. Fedorec, Clare M. Robinson, Ke Yan Wen, Chris P. Barnes
Published in: ACS Synthetic Biology, Issue 9/9, 2020, Page(s) 2258-2266, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.0c00296

Toward Engineering Biosystems With Emergent Collective Functions

Author(s): Thomas E. Gorochowski, Sabine Hauert, Jan-Ulrich Kreft, Lucia Marucci, Namid R. Stillman, T.-Y. Dora Tang, Lucia Bandiera, Vittorio Bartoli, Daniel O. R. Dixon, Alex J. H. Fedorec, Harold Fellermann, Alexander G. Fletcher, Tim Foster, Luca Giuggioli, Antoni Matyjaszkiewicz, Scott McCormick, Sandra Montes Olivas, Jonathan Naylor, Ana Rubio Denniss, Daniel Ward
Published in: Frontiers in Bioengineering and Biotechnology, Issue 8, 2020, ISSN 2296-4185
Publisher: Frontiers Media SA
DOI: 10.3389/fbioe.2020.00705

Towards an Aspect-Oriented Design and Modelling Framework for Synthetic Biology

Author(s): Philipp Boeing, Miriam Leon, Darren Nesbeth, Anthony Finkelstein, Chris Barnes
Published in: Processes, Issue 6/9, 2018, Page(s) 167, ISSN 2227-9717
Publisher: MDPI AG
DOI: 10.3390/pr6090167

Detecting Changes in the Caenorhabditis elegans Intestinal Environment Using an Engineered Bacterial Biosensor.

Author(s): Rutter, Jack W.; Ozdemir, Tanel; Galimov, Evgeniy R.; Quintaneiro, Leonor M.; Rosa, Luca; Thomas, Geraint M.; Cabreiro, Filipe; Barnes, Chris P.
Published in: ACS Synthetic Biology, Issue 1, 2019, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.9b00166

Deep reinforcement learning for the control of microbial co-cultures in bioreactors

Author(s): Neythen J. Treloar, Alex J. H. Fedorec, Brian Ingalls, Chris P. Barnes
Published in: PLOS Computational Biology, Issue 16/4, 2020, Page(s) e1007783, ISSN 1553-7358
Publisher: PLOS
DOI: 10.1371/journal.pcbi.1007783