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Novel PHAge MEthods for improved virus inactivation

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Publications

Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing

Author(s): Sofia Strubbia, My V. T. Phan, Julien Schaeffer, Marion Koopmans, Matthew Cotten, Françoise S. Le Guyader
Published in: Food and Environmental Virology, Issue 11/4, 2019, Page(s) 400-409, ISSN 1867-0334
DOI: 10.1007/s12560-019-09402-3

Increased resolution of African swine fever virus genome patterns based on profile HMMs of protein domains

Author(s): Charles Masembe, My V T Phan, David L Robertson, Matthew Cotten
Published in: Virus Evolution, Issue 6/2, 2020, ISSN 2057-1577
DOI: 10.1093/ve/veaa044

Setting a baseline for global urban virome surveillance in sewage

Author(s): David F. Nieuwenhuijse, Bas B. Oude Munnink, My V. T. Phan, Patrick Munk, Shweta Venkatakrishnan, Frank M. Aarestrup, Matthew Cotten, Marion P. G. Koopmans
Published in: Scientific Reports, Issue 10/1, 2020, ISSN 2045-2322
DOI: 10.1038/s41598-020-69869-0

Norovirus outbreak in a natural playground: A One Health approach

Author(s): Gregorius J. Sips, Mariëlle J. G. Dirven, Joke T. Donkervoort, Francien M. Kolfschoten, Claudia M. E. Schapendonk, My V. T. Phan, Annemieke Bloem, Anna F. Leeuwen, Mariechristine E. Trompenaars, Marion P. G. Koopmans, Annemiek A. Eijk, Miranda Graaf, Ewout B. Fanoy
Published in: Zoonoses and Public Health, Issue 67/4, 2020, Page(s) 453-459, ISSN 1863-1959
DOI: 10.1111/zph.12689

Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters

Author(s): Sofia Strubbia, Julien Schaeffer, Bas B. Oude Munnink, Alban Besnard, My V. T. Phan, David F. Nieuwenhuijse, Miranda de Graaf, Claudia M. E. Schapendonk, Candice Wacrenier, Matthew Cotten, Marion P. G. Koopmans, Françoise S. Le Guyader
Published in: Frontiers in Microbiology, Issue 10, 2019, ISSN 1664-302X
DOI: 10.3389/fmicb.2019.02394

Genome Sequences of Seven Megrivirus Strains from Chickens in The Netherlands

Author(s): Kirsty T. T. Kwok, Myrna M. T. de Rooij, Aniek B. Messink, Inge M. Wouters, Marion P. G. Koopmans, My V. T. Phan
Published in: Microbiology Resource Announcements, Issue 9/47, 2020, ISSN 2576-098X
DOI: 10.1128/mra.01207-20

Shedding of Yellow Fever Virus From an Imported Case in the Netherlands After Travel to Brazil

Author(s): My V T Phan, Mariana Mendonca Melo, Els van Nood, Georgina Aron, Jolanda J C Kreeft-Voermans, Marion P G Koopmans, Chantal Reusken, Corine H GeurtsvanKessel, Matthew Cotten
Published in: Open Forum Infectious Diseases, Issue 7/2, 2020, ISSN 2328-8957
DOI: 10.1093/ofid/ofaa020

Automated download and clean-up of family-specific databases for kmer-based virus identification

Author(s): Rosa L Allesøe, Camilla K Lemvigh, My V T Phan, Philip T L C Clausen, Alfred F Florensa, Marion P G Koopmans, Ole Lund, Matthew Cotten
Published in: Bioinformatics, Issue 2020 Oct 8;btaa857, 2020, ISSN 1367-4803
DOI: 10.1093/bioinformatics/btaa857

Genome Sequence of a Minacovirus Strain from a Farmed Mink in The Netherlands

Author(s): Kirsty T. T. Kwok, Myrna M. T. de Rooij, Felisita F. Sinartio, Lidwien A. M. Smit, Marion P. G. Koopmans, My V. T. Phan
Published in: Microbiology Resource Announcements, Issue 10/8, 2021, ISSN 2576-098X
DOI: 10.1128/mra.01451-20

Virus Metagenomics in Farm Animals: A Systematic Review

Author(s): Kirsty T. T. Kwok, David F. Nieuwenhuijse, My V. T. Phan, Marion P. G. Koopmans
Published in: Viruses, Issue 12/1, 2020, Page(s) 107, ISSN 1999-4915
DOI: 10.3390/v12010107