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Mapping migration and adaptation in genomes

Objective

There is increasing evidence that gene flow between populations adapted to different environments is widespread in nature. Understanding this interplay of adaptation and migration at the genomic level is a fundamental goal of evolutionary biology, with wide applications in situations where these two forces operate, e.g. pesticide resistance or species invasion. Yet, this goal remains largely elusive, mainly because genetic signatures of local adaptation are confounded by other evolutionary processes, such as past demography, the removal of deleterious mutations and recombination. I will address this by integrating new computational methods with new data from experimental evolution and field populations. First, I will develop a method to map gene flow along the genome to find regions under divergent selection, taking the challenging step of modelling recombination and background selection. I will then apply it to characterize the spread of pesticide resistance in field populations of a major crop pest, Tetranychus urticae (spider mite). Due to their small genome (90Mb) and haplodidploidy, we have the unique opportunity to get phased genomes from haploid males. Third, by training-through-research, I will follow mites (and their genomes) evolving under controlled selection regimes in the laboratory (with vs without pesticide), varying migration rates. Combining my background on population genomics with the PI’s knowledge in spider-mite evolutionary ecology and the excellent conditions for experimental evolution at the host institute, we will move the field towards a comprehensive characterization of the genomics of adaptation in face of gene flow. The new method will be of general application to address fundamental questions on speciation and ecology, while providing a transferable framework to tackle societal challenges, from agriculture to human health and global change (e.g. find genes responsible for human disease and crop response to increasing temperatures).

Fields of science (EuroSciVoc)

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Keywords

Project’s keywords as indicated by the project coordinator. Not to be confused with the EuroSciVoc taxonomy (Fields of science)

Programme(s)

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Topic(s)

Calls for proposals are divided into topics. A topic defines a specific subject or area for which applicants can submit proposals. The description of a topic comprises its specific scope and the expected impact of the funded project.

Funding Scheme

Funding scheme (or “Type of Action”) inside a programme with common features. It specifies: the scope of what is funded; the reimbursement rate; specific evaluation criteria to qualify for funding; and the use of simplified forms of costs like lump sums.

MSCA-IF - Marie Skłodowska-Curie Individual Fellowships (IF)

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Call for proposal

Procedure for inviting applicants to submit project proposals, with the aim of receiving EU funding.

(opens in new window) H2020-MSCA-IF-2017

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Coordinator

FCIENCIAS.ID - ASSOCIACAO PARA A INVESTIGACAO E DESENVOLVIMENTO DE CIENCIAS
Net EU contribution

Net EU financial contribution. The sum of money that the participant receives, deducted by the EU contribution to its linked third party. It considers the distribution of the EU financial contribution between direct beneficiaries of the project and other types of participants, like third-party participants.

€ 148 635,60
Total cost

The total costs incurred by this organisation to participate in the project, including direct and indirect costs. This amount is a subset of the overall project budget.

€ 148 635,60
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