Mapping migration and adaptation in genomes

Información del proyecto

MAPGenome

Identificador del acuerdo de subvención: 799729

DOI

10.3030/799729

Proyecto finalizado el 30 Noviembre 2019

Fecha de la firma de la CE 27 Febrero 2018

Fecha de inicio 1 Marzo 2018

Fecha de finalización 29 Febrero 2020

Financiado con arreglo a

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Coste total

€ 148 635,60

Aportación de la UE

€ 148 635,60

Coordinado por

FCIENCIAS.ID - ASSOCIACAO PARA A INVESTIGACAO E DESENVOLVIMENTO DE CIENCIAS
Portugal

Objetivo

There is increasing evidence that gene flow between populations adapted to different environments is widespread in nature. Understanding this interplay of adaptation and migration at the genomic level is a fundamental goal of evolutionary biology, with wide applications in situations where these two forces operate, e.g. pesticide resistance or species invasion. Yet, this goal remains largely elusive, mainly because genetic signatures of local adaptation are confounded by other evolutionary processes, such as past demography, the removal of deleterious mutations and recombination. I will address this by integrating new computational methods with new data from experimental evolution and field populations. First, I will develop a method to map gene flow along the genome to find regions under divergent selection, taking the challenging step of modelling recombination and background selection. I will then apply it to characterize the spread of pesticide resistance in field populations of a major crop pest, Tetranychus urticae (spider mite). Due to their small genome (90Mb) and haplodidploidy, we have the unique opportunity to get phased genomes from haploid males. Third, by training-through-research, I will follow mites (and their genomes) evolving under controlled selection regimes in the laboratory (with vs without pesticide), varying migration rates. Combining my background on population genomics with the PI’s knowledge in spider-mite evolutionary ecology and the excellent conditions for experimental evolution at the host institute, we will move the field towards a comprehensive characterization of the genomics of adaptation in face of gene flow. The new method will be of general application to address fundamental questions on speciation and ecology, while providing a transferable framework to tackle societal challenges, from agriculture to human health and global change (e.g. find genes responsible for human disease and crop response to increasing temperatures).

Ámbito científico (EuroSciVoc)

• ciencias naturales › ciencias químicas › química inorgánica › metales de transición
• ciencias naturales › ciencias biológicas › biología evolutiva
• ciencias naturales › ciencias biológicas › genética › mutación
• ciencias naturales › ciencias biológicas › ecología › ecología evolutiva
• ciencias naturales › ciencias biológicas › genética › genoma

Palabras clave

• Pesticide resistance
• Tetranychus urticae
• molecular ecology
• inference of demographic history
• adaptation
• gene flow

Programa(s)

• H2020-EU.1.3. - EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions PROGRAMA PRINCIPAL
  
• H2020-EU.1.3.2. - Nurturing excellence by means of cross-border and cross-sector mobility
  

Tema(s)

• MSCA-IF-2017 - Individual Fellowships
  

Régimen de financiación

MSCA-IF - Marie Skłodowska-Curie Individual Fellowships (IF)

Convocatoria de propuestas

H2020-MSCA-IF-2017

Coordinador

FCIENCIAS.ID - ASSOCIACAO PARA A INVESTIGACAO E DESENVOLVIMENTO DE CIENCIAS

• Aportación neta de la UEn: € 148 635,60
• Dirección: CAMPO GRANDE, EDIFICIO C1, PISO 3 ; 1749 016 Lisbon ; Portugal
• Tipo de actividad: Research Organisations
• Coste total: € 148 635,60