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The macroevolutionary impact of epigenetics and lateral gene transfer on eukaryotic genomes

Deliverables

Data Management Plan

Participation to the Open Research Data Pilot

Publications

Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species

Author(s): Ludek Koreny, Mohammad Zeeshan, Konstantin Barylyuk, Eelco C. Tromer, Jolien J. E. van Hooff, Declan Brady, Huiling Ke, Sara Chelaghma, David J. P. Ferguson, Laura Eme, Rita Tewari, Ross F. Waller
Published in: PLOS Biology, 19/3, 2021, Page(s) e3001081, ISSN 1545-7885
Publisher: PLOS
DOI: 10.1371/journal.pbio.3001081

Releasing uncurated datasets is essential for reproducible phylogenomics

Author(s): Eric D. Salomaki, Laura Eme, Matthew W. Brown, Martin Kolisko
Published in: Nature Ecology & Evolution, 4/11, 2020, Page(s) 1435-1437, ISSN 2397-334X
Publisher: Nature Publishing Group
DOI: 10.1038/s41559-020-01296-w

Marine Sediments Illuminate Chlamydiae Diversity and Evolution

Author(s): Jennah E. Dharamshi, Daniel Tamarit, Laura Eme, Courtney W. Stairs, Joran Martijn, Felix Homa, Steffen L. Jørgensen, Anja Spang, Thijs J.G. Ettema
Published in: Current Biology, 30/6, 2020, Page(s) 1032-1048.e7, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2020.02.016

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

Author(s): Alexander K. Tice, David Žihala, Tomáš Pánek, Robert E. Jones, Eric D. Salomaki, Serafim Nenarokov, Fabien Burki, Marek Eliáš, Laura Eme, Andrew J. Roger, Antonis Rokas, Xing-Xing Shen, Jürgen F. H. Strassert, Martin Kolísko, Matthew W. Brown
Published in: PLOS Biology, 19/8, 2021, Page(s) e3001365, ISSN 1545-7885
Publisher: PLOS
DOI: 10.1371/journal.pbio.3001365

Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes

Author(s): Shannon J. Sibbald, Laura Eme, John M. Archibald, Andrew J. Roger
Published in: Trends in Parasitology, 36/11, 2020, Page(s) 927-941, ISSN 1471-4922
Publisher: Elsevier BV
DOI: 10.1016/j.pt.2020.07.014

Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes

Author(s): Courtney W. Stairs, Petr Táborský, Eric D. Salomaki, Martin Kolisko, Tomáš Pánek, Laura Eme, Miluše Hradilová, Čestmír Vlček, Jon Jerlström-Hultqvist, Andrew J. Roger, Ivan Čepička
Published in: Current Biology, 2021, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2021.10.010

Chlamydial contribution to anaerobic metabolism during eukaryotic evolution

Author(s): Courtney W. Stairs, Jennah E. Dharamshi, Daniel Tamarit, Laura Eme, Steffen L. Jørgensen, Anja Spang, Thijs J. G. Ettema
Published in: Science Advances, 6/35, 2020, ISSN 2375-2548
Publisher: American Association for the Advancement of Science
DOI: 10.1126/sciadv.abb7258