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Great ape organoids to reconstruct uniquely human development

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Publications

CSS: cluster similarity spectrum integration of single-cell genomics data

Author(s): Zhisong He, Agnieska Brazovskaja, Sebastian Ebert, J. Gray Camp, Barbara Treutlein
Published in: Genome Biology, 21/1, 2020, Page(s) 224-244, ISSN 1474-760X
Publisher: Springer Nature
DOI: 10.1186/s13059-020-02147-4

Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases

Author(s): Jonas Simon Fleck, Fátima Sanchís-Calleja, Zhisong He, Malgorzata Santel, Michael James Boyle, J. Gray Camp, Barbara Treutlein
Published in: Cell Stem Cell, 28, 2021, Page(s) 1-12, ISSN 1934-5909
Publisher: Cell Press
DOI: 10.1016/j.stem.2021.02.015

Charting human development using a multi-endodermal organ atlas and organoid models

Author(s): Qianhui Yu, Umut Kilik, Emily M. Holloway, Yu-Hwai Tsai, Christoph Harmel, Angeline Wu, Joshua H. Wu, Michael Czerwinski, Charlie J. Childs, Zhisong He, Meghan M. Capeling, Sha Huang, Ian A. Glass, Peter D.R. Higgins, Barbara Treutlein, Jason R. Spence, J. Gray Camp
Published in: Cell, 184, 2021, Page(s) 1-18, ISSN 0092-8674
Publisher: Cell Press
DOI: 10.1016/j.cell.2021.04.028

Chromatin regulatory dynamics of early human small intestinal development using a directed differentiation model

Author(s): Yu-Han Hung, Sha Huang, Michael K Dame, Qianhui Yu, Qing C Yu, Yi A Zeng, J Gray Camp, Jason R Spence, Praveen Sethupathy
Published in: Nucleic Acids Research, 49/2, 2021, Page(s) 726-744, ISSN 0305-1048
Publisher: Oxford University Press
DOI: 10.1093/nar/gkaa1204

Resolving Neurodevelopmental and Vision Disorders Using Organoid Single-Cell Multi-omics

Author(s): Giovanna Brancati, Barbara Treutlein, J. Gray Camp
Published in: Neuron, 107/6, 2020, Page(s) 1000-1013, ISSN 0896-6273
Publisher: Cell Press
DOI: 10.1016/j.neuron.2020.09.001

Organoid single-cell genomic atlas uncovers human-specific features of brain development

Author(s): Sabina Kanton, Michael James Boyle, Zhisong He, Malgorzata Santel, Anne Weigert, Fátima Sanchís-Calleja, Patricia Guijarro, Leila Sidow, Jonas Simon Fleck, Dingding Han, Zhengzong Qian, Michael Heide, Wieland B. Huttner, Philipp Khaitovich, Svante Pääbo, Barbara Treutlein, J. Gray Camp
Published in: Nature, 574/7778, 2019, Page(s) 418-422, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-019-1654-9

Mapping human cell phenotypes to genotypes with single-cell genomics

Author(s): J. Gray Camp, Randall Platt, Barbara Treutlein
Published in: Science, 365/6460, 2019, Page(s) 1401-1405, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.aax6648

Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains

Author(s): Ekaterina Khrameeva, Ilia Kurochkin, Dingding Han, Patricia Guijarro, Sabina Kanton, Malgorzata Santel, Zhengzong Qian, Shen Rong, Pavel Mazin, Marat Sabirov, Matvei Bulat, Olga Efimova, Anna Tkachev, Song Guo, Chet C. Sherwood, J. Gray Camp, Svante Pääbo, Barbara Treutlein, Philipp Khaitovich
Published in: Genome Research, 30/5, 2020, Page(s) 776-789, ISSN 1088-9051
Publisher: Cold Spring Harbor Laboratory Press
DOI: 10.1101/gr.256958.119

Human Stem Cell Resources Are an Inroad to Neandertal DNA Functions

Author(s): Michael Dannemann, Zhisong He, Christian Heide, Benjamin Vernot, Leila Sidow, Sabina Kanton, Anne Weigert, Barbara Treutlein, Svante Pääbo, Janet Kelso, J. Gray Camp
Published in: Stem Cell Reports, 15/1, 2020, Page(s) 214-225, ISSN 2213-6711
Publisher: Cell Press
DOI: 10.1016/j.stemcr.2020.05.018

Organoid single-cell genomic atlas uncovers human-specific features of brain development

Author(s): Sabina Kanton, Michael James Boyle, Zhisong He, Malgorzata Santel, Anne Weigert, Fátima Sanchís-Calleja, Patricia Guijarro, Leila Sidow, Jonas Simon Fleck, Dingding Han, Zhengzong Qian, Michael Heide, Wieland B. Huttner, Philipp Khaitovich, Svante Pääbo, Barbara Treutlein, J. Gray Camp
Published in: Nature, 574/7778, 2019, Page(s) 418-422, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-019-1654-9

Single-cell genomic analysis of human cerebral organoids

Author(s): Sabina Kanton, Barbara Treutlein, J. Gray Camp
Published in: Human Pluripotent Stem Cell Derived Organoid Models, 159, 2020, Page(s) 229-256, ISBN 9780128215319
Publisher: Elsevier
DOI: 10.1016/bs.mcb.2020.03.013