A toolbox for fitness landscapes in evolution

Deliverables

Publications

In search of the Goldilocks zone for hybrid speciation II: hard times for hybrid speciation?

Author(s): A. Blanckaert, V. Sriram, C. Bank
Published in: Evolution, 2023, ISSN 0014-3820
Publisher: Society for the Study of Evolution
DOI: 10.1093/evolut/qpad125

Adaptive Potential of Epigenetic Switching During Adaptation to Fluctuating Environments

Author(s): Dragan Stajic, Claudia Bank, Isabel Gordo
Published in: Genome Biology and Evolution, 2022, ISSN 1759-6653
Publisher: Oxford University Press
DOI: 10.1093/gbe/evac065

Challenges and pitfalls of inferring microbial growth rates from lab cultures

Author(s): Ana-Hermina Ghenu, Loïc Marrec, Claudia Bank
Published in: Frontiers in Ecology and Evolution, Issue 11, 2024, ISSN 2296-701X
Publisher: frontiers
DOI: 10.3389/fevo.2023.1313500

Towards evolutionary predictions: Current promises and challenges

Author(s): Meike T. Wortel, Deepa Agashe, Susan F. Bailey, Claudia Bank, Karen Bisschop, Thomas Blankers, Johannes Cairns, Enrico Sandro Colizzi, Davide Cusseddu, Michael M. Desai, Bram van Dijk, Martijn Egas, Jacintha Ellers, Astrid T. Groot, David G. Heckel, Marcelle L. Johnson, Ken Kraaijeveld, Joachim Krug, Liedewij Laan, Michael Lässig, Peter A. Lind, Jeroen Meijer, Luke M. Noble, Samir Okasha, Paul B.
Published in: Evolutionary Applications, 2022, ISSN 1752-4571
Publisher: Wiley-Blackwell
DOI: 10.1111/eva.13513

Deleterious mutation accumulation and the long-term fate of chromosomal inversions

Author(s): Emma L. Berdan, Alexandre Blanckaert, Roger K. Butlin, Claudia Bank
Published in: PLOS Genetics, Issue 17/3, 2021, Page(s) e1009411, ISSN 1553-7404
Publisher: Plos
DOI: 10.1371/journal.pgen.1009411

Evolutionary models predict potential mechanisms of escape from mutational meltdown

Author(s): C. Bank, M.A. Schmitz, A.Y. Morales-Arce
Published in: Frontiers in Virology, 2022, ISSN 2673-818X
Publisher: Frontiers
DOI: 10.3389/fviro.2022.886655

Unpredictability of the Fitness Effects of Antimicrobial Resistance Mutations Across Environments in <i>Escherichia coli</i>

Author(s): Aaron Hinz, André Amado, Rees Kassen, Claudia Bank, Alex Wong
Published in: Molecular Biology and Evolution, Issue 41, 2024, ISSN 0737-4038
Publisher: Oxford University Press
DOI: 10.1093/molbev/msae086

Dominance and multi-locus interaction

Author(s): Juan Li, Claudia Bank
Published in: Trends in Genetics, Issue 40, 2024, Page(s) 364-378, ISSN 0168-9525
Publisher: Elsevier BV
DOI: 10.1016/j.tig.2023.12.003

Epistasis and Adaptation on Fitness Landscapes

Author(s): Claudia Bank
Published in: Annual Review of Ecology, Evolution, and Systematics, 2022, ISSN 1545-2069
Publisher: Annual Reviews
DOI: 10.1146/annurev-ecolsys-102320-112153

Patterns of selection against centrosome amplification in human cell lines

Author(s): Marco António Dias Louro, Mónica Bettencourt-Dias, Claudia Bank
Published in: PLOS Computational Biology, Issue 17/5, 2021, Page(s) e1008765, ISSN 1553-7358
Publisher: Plos
DOI: 10.1371/journal.pcbi.1008765

The limits to parapatric speciation 3: evolution of strong reproductive isolation in presence of gene flow despite limited ecological differentiation

Author(s): Alexandre Blanckaert, Claudia Bank, Joachim Hermisson
Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 375/1806, 2020, Page(s) 20190532, ISSN 0962-8436
Publisher: Royal Society of London
DOI: 10.1098/rstb.2019.0532

Imbalanced segregation of recombinant haplotypes in hybrid populations reveals inter- and intrachromosomal Dobzhansky-Muller incompatibilities

Author(s): Juan Li, Molly Schumer, Claudia Bank
Published in: Plos Genetics, 2022, ISSN 1553-7390
Publisher: Public Library of Science
DOI: 10.1371/journal.pgen.1010120

Rapid adaptation of recombining populations on tunable fitness landscapes

Author(s): J. Li, A. Amado, C. Bank
Published in: Molecular Ecology, 2023, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.16900

The role of gene presence–absence variations on genetic incompatibility in Asian rice

Author(s): Juan Li, Cheng‐Ruei Lee
Published in: New Phytologist, Issue 239, 2023, Page(s) 778-791, ISSN 0028-646X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/nph.18969

The Adaptive Potential of the Middle Domain of Yeast Hsp90

Author(s): Pamela A Cote-Hammarlof, Inês Fragata, Julia Flynn, David Mavor, Konstantin B Zeldovich, Claudia Bank, Daniel N A Bolon
Published in: Molecular Biology and Evolution, Issue 38/2, 2020, Page(s) 368-379, ISSN 1537-1719
Publisher: Wiley
DOI: 10.1093/molbev/msaa211

STUN: forward-time simulation on TUnable fitNess landscapes in recombining populations

Author(s): André Amado, Juan Li, Claudia Bank
Published in: Bioinformatics Advances, Issue 3, 2023, ISSN 2635-0041
Publisher: Oxford Academic
DOI: 10.1093/bioadv/vbad164

Ecological tradeoffs lead to complex evolutionary trajectories and sustained diversity on dynamic fitness landscapes

Author(s): André Amado, Claudia Bank
Published in: Journal of Physics A: Mathematical and Theoretical, Issue 57, 2024, Page(s) 195601, ISSN 1751-8113
Publisher: Institute of Physics Publishing
DOI: 10.1088/1751-8121/ad30d0

The extinction time under mutational meltdown driven by high mutation rates

Author(s): L. Lansch-Justen, D. Cusseddu, M.A. Schmitz, C. Bank
Published in: Ecology and Evolution, 2022, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.9046

Evolutionary rescue in a fluctuating environment: periodic versus quasi-periodic environmental changes

Author(s): Loïc Marrec, Claudia Bank
Published in: Proceedings of the Royal Society B: Biological Sciences, Issue 290, 2023, ISSN 0962-8452
Publisher: Royal Society of London
DOI: 10.1098/rspb.2023.0770

A multilocus perspective on the evolutionary dynamics of multistrain pathogens

Author(s): David V. McLeod, Claudia Bank, Sylvain Gandon
Published in: Proceedings of the National Academy of Sciences, Issue 121, 2024, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2401578121

Understanding Admixture: Haplodiploidy to the Rescue

Author(s): Pierre Nouhaud, Alexandre Blanckaert, Claudia Bank, Jonna Kulmuni
Published in: Trends in Ecology & Evolution, Issue 35/1, 2020, Page(s) 34-42, ISSN 0169-5347
Publisher: Elsevier BV
DOI: 10.1016/j.tree.2019.08.013

Epistasis decreases with increasing antibiotic pressure but not temperature

Author(s): Ana-Hermina Ghenu, André Amado, Isabel Gordo, Claudia Bank
Published in: Philosophical Transactions B, 2023, ISSN 0962-8436
Publisher: Royal Society of London
DOI: 10.1098/rstb.2022.0058

Comprehensive fitness maps of Hsp90 show widespread environmental dependence

Author(s): Julia M Flynn, Ammeret Rossouw, Pamela Cote-Hammarlof, Inês Fragata, David Mavor, Carl Hollins, Claudia Bank, Daniel NA Bolon
Published in: eLife, Issue 9, 2020, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/eLife.53810

Low mutational load and high mutation rate variation in gut commensal bacteria.

Author(s): Paulo Durao; Claudia Bank; Ricardo S Ramiro; Isabel Gordo
Published in: Plos Biology, Issue 2, 2020, ISSN 1544-9173
Publisher: Public Library of Science
DOI: 10.1371/journal.pbio.3000617

Solving the stochastic dynamics of population growth

Author(s): L. Marrec, C. Bank, T. Bertrand
Published in: Ecology and Evolution, 2023, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.10295

Deliverables

Publications

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