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A toolbox for fitness landscapes in evolution

Deliverables

Publications

In search of the Goldilocks zone for hybrid speciation II: hard times for hybrid speciation?

Author(s): A. Blanckaert, V. Sriram, C. Bank
Published in: Evolution, 2023, ISSN 0014-3820
Publisher: Society for the Study of Evolution
DOI: 10.1093/evolut/qpad125

Deleterious mutation accumulation and the long-term fate of chromosomal inversions

Author(s): Emma L. Berdan, Alexandre Blanckaert, Roger K. Butlin, Claudia Bank
Published in: PLOS Genetics, Issue 17/3, 2021, Page(s) e1009411, ISSN 1553-7404
Publisher: Plos
DOI: 10.1371/journal.pgen.1009411

Evolutionary models predict potential mechanisms of escape from mutational meltdown

Author(s): C. Bank, M.A. Schmitz, A.Y. Morales-Arce
Published in: Frontiers in Virology, 2022, ISSN 2673-818X
Publisher: Frontiers
DOI: 10.3389/fviro.2022.886655

Epistasis and Adaptation on Fitness Landscapes

Author(s): Claudia Bank
Published in: Annual Review of Ecology, Evolution, and Systematics, 2022, ISSN 1545-2069
Publisher: Annual Reviews
DOI: 10.1146/annurev-ecolsys-102320-112153

Patterns of selection against centrosome amplification in human cell lines

Author(s): Marco António Dias Louro, Mónica Bettencourt-Dias, Claudia Bank
Published in: PLOS Computational Biology, Issue 17/5, 2021, Page(s) e1008765, ISSN 1553-7358
Publisher: Plos
DOI: 10.1371/journal.pcbi.1008765

The limits to parapatric speciation 3: evolution of strong reproductive isolation in presence of gene flow despite limited ecological differentiation

Author(s): Alexandre Blanckaert, Claudia Bank, Joachim Hermisson
Published in: Philosophical Transactions of the Royal Society B: Biological Sciences, Issue 375/1806, 2020, Page(s) 20190532, ISSN 0962-8436
Publisher: Royal Society of London
DOI: 10.1098/rstb.2019.0532

Rapid adaptation of recombining populations on tunable fitness landscapes

Author(s): J. Li, A. Amado, C. Bank
Published in: Molecular Ecology, 2023, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.16900

The Adaptive Potential of the Middle Domain of Yeast Hsp90

Author(s): Pamela A Cote-Hammarlof, Inês Fragata, Julia Flynn, David Mavor, Konstantin B Zeldovich, Claudia Bank, Daniel N A Bolon
Published in: Molecular Biology and Evolution, Issue 38/2, 2020, Page(s) 368-379, ISSN 1537-1719
Publisher: Wiley
DOI: 10.1093/molbev/msaa211

Evolutionary rescue in a fluctuating environment: periodic versus quasi-periodic environmental changes

Author(s): L. Marrec, C. Bank
Published in: Proceedings of the Royal Society B, 2023, ISSN 1471-2954
Publisher: The Royal Society
DOI: 10.1098/rspb.2023.0770

The extinction time under mutational meltdown driven by high mutation rates

Author(s): L. Lansch-Justen, D. Cusseddu, M.A. Schmitz, C. Bank
Published in: Ecology and Evolution, 2022, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.9046

Understanding Admixture: Haplodiploidy to the Rescue

Author(s): Pierre Nouhaud, Alexandre Blanckaert, Claudia Bank, Jonna Kulmuni
Published in: Trends in Ecology & Evolution, Issue 35/1, 2020, Page(s) 34-42, ISSN 0169-5347
Publisher: Elsevier BV
DOI: 10.1016/j.tree.2019.08.013

Epistasis decreases with increasing antibiotic pressure but not temperature

Author(s): Ana-Hermina Ghenu, André Amado, Isabel Gordo, Claudia Bank
Published in: Philosophical Transactions B, 2023, ISSN 0962-8436
Publisher: Royal Society of London
DOI: 10.1098/rstb.2022.0058

Comprehensive fitness maps of Hsp90 show widespread environmental dependence

Author(s): Julia M Flynn, Ammeret Rossouw, Pamela Cote-Hammarlof, Inês Fragata, David Mavor, Carl Hollins, Claudia Bank, Daniel NA Bolon
Published in: eLife, Issue 9, 2020, ISSN 2050-084X
Publisher: eLife Sciences Publications
DOI: 10.7554/eLife.53810

Low mutational load and high mutation rate variation in gut commensal bacteria.

Author(s): Paulo Durao; Claudia Bank; Ricardo S Ramiro; Isabel Gordo
Published in: Plos Biology, Issue 2, 2020, ISSN 1544-9173
Publisher: Public Library of Science
DOI: 10.1371/journal.pbio.3000617

Solving the stochastic dynamics of population growth

Author(s): L. Marrec, C. Bank, T. Bertrand
Published in: Ecology and Evolution, 2023, ISSN 2045-7758
Publisher: John Wiley and Sons Ltd
DOI: 10.1002/ece3.10295

Epigenetic switching outcompetes genetic mutations during adaptation to fluctuating environments

Author(s): Dragan Stajic, Claudia Bank, Isabel Gordo
Published in: 2021
Publisher: Cold Spring Harbor
DOI: 10.1101/2021.03.11.434930

The why, what and how of predicting evolution across biology: from disease to biotechnology to biodiversity

Author(s): M.T. Wortel, D. Agashe, S.F. Bailey, C. Bank, K. Bisschop, T. Blankers, J. Cairns, E.S. Colizzi, D. Cusseddu, M.M. Desai, B. van Dijk, M. Egas, J. Ellers, A.T. Groot, D.G. Heckel, M.L. Johnson, K. Kraaijeveld, J. Krug, L. Laan, M. Lässig, P.A. Lind, J. Meijer, L.M. Noble, S. Okasha, P.B. Rainey, D.E. Rozen, S. Shitut, S.J. Tans, O. Tenaillon, H. Teotónio, J.A.G.M. de Visser, M.E. Visser, R.M.A.
Published in: 2021
Publisher: EcoEvoRxiv Preprints
DOI: 10.32942/osf.io/4u3mg

Inferring inter- and intrachromosomal Dobzhansky-Muller incompatibilities from imbalanced segregation of recombinant haplotypes in hybrid populations

Author(s): Juan Li, Molly Schumer, Claudia Bank
Published in: 2021
Publisher: biorxiv
DOI: 10.1101/2021.08.04.454891

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