Risultati finali
Report on whether additional statistically weak PREs in the fly could be identified (UBER), Presentation of TF mitotic bookmarking in an international conference (CERBM).
Presentation of WP3 results at meetingsESR13 Poster on Technology development for single-cell small non-coding RNA-seq analysis (DIAGENODE), ESR14 Poster on Novel computational tools to quantify NGS data for total RNA-seq (DIAGENODE)
Manuscripts describing WP1 resultsPaper that describes, validates and explores the Polycomb memory model (UCPH), Manuscript of PcG/TrxG residence times in live Drosophila chromatin (UBER), Manuscript describing and validating FLC transcriptional dynamics model (JIC), Manuscript on antisense-mediated bistable switch in X-chromosome inactivation (MPG)
Manuscripts describing WP2 resultsA review article based on the introduction to the thesis (OSR), Manuscript on TF mitotic bookmarking (CERBM), Manuscript of high-throughput reporter assay for predicted mammalian PREs (UBER), Manuscript on Polycomb targeting in flies (UBER).
Final ConferenceWP5 Task 5.2, event 6
Manuscripts describing WP3 resultsArticle on chromatin architecture of selected specific loci and genome-wide (NAPOLI), Article comparing chromatin contact between ES and mouse embryos (MDC), ESR 11 Review article based on the introduction to the thesis (UOXF), ESR 15 Review article based on the introduction to the thesis (UOXF).
Network logo designedWP6 Task 6.1 logo
Presentation of WP1 results at meetingsPresentation on 3D single cell chromosome organisation (FMI), Poster of Polycomb cellular memory model (UCPH), Presentation describing a model for FLC transcriptional dynamics (JIC)
Network information flyer completeWP6 Task 6.1 flyer
Strasbourg Summer SchoolWP5 Task 5.2, event 3
WP6 Task 6.1 website
Pubblicazioni
Autori:
Govind Menon, Eduardo Mateo Bonmati, Svenja Reeck, Robert Maple, Zhe Wu, Robert Ietswaart, Caroline Dean, Martin Howard
Pubblicato in:
BioRxiv, 2023
Editore:
Cold Spring Harbor Laboratories (CSHL)
DOI:
10.1101/2023.07.06.547969
Autori:
Francesco Musella; Ana Pombo; Rieke Kempfer; Antonella Prisco; Andrea Esposito; Andrea M. Chiariello; Luca Fiorillo; Mattia Conte; Mario Nicodemi; Ibai Irastorza-Azcarate; Simona Bianco; Alexander Kukalev
Pubblicato in:
Numero 1, 2020
Editore:
bioRxiv
DOI:
10.1101/2020.04.24.059915
Autori:
Liat Ravid Lustig, Abhishek Sampath Kumar, Till Schwämmle, Ilona Dunkel, Gemma Noviello, Raha Weigert, Guido Pacini, Rene Buschow, Afrah Ghauri, Maximilian Stoetzel, Lars Wittler, Alexander Meissner, Edda G Schulz
Pubblicato in:
BioRxiv, 2022
Editore:
Cold Spring Harbor Laboratories (CSHL)
DOI:
10.1101/2022.08.02.502458
Autori:
Matteo Mazzocca, Alessia Loffreda, Emanuele Colombo, Tom Fillot, Daniela Gnani, Paola Falletta, Emanuele Monteleone, Serena Capozi, Edouard Bertrand, Gaelle Legube, Zeno Lavagnino, Carlo Tacchetti, Davide Mazza
Pubblicato in:
BioRxiv, 2022
Editore:
Cold Spring Harbor Laboratories (CSHL)
DOI:
10.1101/2022.12.29.522193
Autori:
Jack E. Feltham, Shidong Xi, Struan C. Murray, Meredith Wouters, Julian Urdiain-Arraiza, Raphael Heilig, Charlotte George, Anna F. Townley, Emile Roberts, Benedikt M. Kessler, Sabrina Liberatori, Philip D. Charles, Andrew Angel, Roman Fischer,
Pubblicato in:
BioRxiv, 2020
Editore:
Cold Spring Harbor Laboratory (CSHL)
DOI:
10.1101/833921
Autori:
Cecilia Lovkvist, Pawel Mikulski, Svenja Reeck, Matthew Hartley, Caroline Dean, Martin Howard
Pubblicato in:
eLife, 2021, ISSN 2050-084X
Editore:
eLife Sciences Publications
DOI:
10.7554/elife.66454
Autori:
Mattia Conte, Luca Fiorillo, Simona Bianco, Andrea M. Chiariello, Andrea Esposito, Mario Nicodemi
Pubblicato in:
Nature Communications, Numero 11/1, 2020, ISSN 2041-1723
Editore:
Nature Publishing Group
DOI:
10.1038/s41467-020-17141-4
Autori:
Jan Fabio Nickels, Ashleigh Katrine Edwards, Sebastian Jespersen Charlton, Amanda Møller Mortensen, Sif Christine Lykke Hougaard, Ala Trusina, Kim Sneppen, Geneviève Thon
Pubblicato in:
Proceedings of the National Academy of Sciences, Numero 118/15, 2021, Pagina/e e2022887118, ISSN 0027-8424
Editore:
National Academy of Sciences
DOI:
10.1073/pnas.2022887118
Autori:
Gemma Noviello, Rutger AF Gjaltema, Edda G Schulz
Pubblicato in:
Nature Communications, 2023, ISSN 2041-1723
Editore:
Nature Publishing Group
Autori:
Pia Mach, Pavel I. Kos, Yinxiu Zhan, Julie Cramard, Simon Gaudin, Jana Tünnermann, Edoardo Marchi, Jan Eglinger, Jessica Zuin, Mariya Kryzhanovska, Sebastien Smallwood, Laurent Gelman, Gregory Roth, Elphège P. Nora, Guido Tiana & Luca Giorgetti
Pubblicato in:
Nature Genetics, Numero 54, 2022, ISSN 1061-4036
Editore:
Nature Publishing Group
DOI:
10.1038/s41588-022-01232-7
Autori:
Philipp A. Steffen; Christina Altmutter; Eva Dworschak; Sini Junttila; Attila Gyenesei; Xinzhou Zhu; Tobias Kockmann; Leonie Ringrose
Pubblicato in:
Chromosoma, Numero 1, 2021, ISSN 0009-5915
Editore:
Springer Verlag
DOI:
10.3929/ethz-b-000500204
Autori:
Mattia Conte, Ehsan Irani, Andrea M. Chiariello, Alex Abraham, Simona Bianco, Andrea Esposito & Mario Nicodemi
Pubblicato in:
Nature Communications, Numero 13, 4070, 2022, ISSN 2041-1723
Editore:
Nature Publishing Group
DOI:
10.1038/s41467-022-31856-6
Autori:
Matteo Mazzocca, Tom Fillot, Alessia Loffreda, Daniela Gnani, Davide Mazza
Pubblicato in:
Biochemical Society Transactions, 2021, ISSN 0300-5127
Editore:
Portland Press, Ltd.
DOI:
10.1042/bst20200709
Autori:
Kim Sneppen, Leonie Ringrose
Pubblicato in:
Nature Communications, Numero 10/1, 2019, ISSN 2041-1723
Editore:
Nature Publishing Group
DOI:
10.1038/s41467-019-10130-2
Autori:
Andrea Hita, Gilles Brocart, Ana Fernandez, Marc Rehmsmeier, Anna Alemany and Sol Schvartzman
Pubblicato in:
BMC Bioinformatics, 2022, ISSN 1471-2105
Editore:
BioMed Central
DOI:
10.1186/s12859-021-04544-3
Autori:
Nickels, J. F., Della-Rosa, M. E., Goyeneche, I. M., Charlton, S. J., Sneppen, K., & Thon, G.
Pubblicato in:
Cell Reports, Numero 39(7), 110828, 2022, ISSN 2211-1247
Editore:
Cell Press
DOI:
10.1016/j.celrep.2022.110828
Autori:
Rea L. Antoniou-Kourounioti, Anis Meschichi, Svenja Reeck, Scott Berry, Govind Menon, Yusheng Zhao, John A. Fozard, Terri L. Holmes, Huamei Wang, Matthew Hartley, Caroline Dean, Stefanie Rosa, Martin Howard
Pubblicato in:
eLife, Numero 12, e79743, 2023, ISSN 2050-084X
Editore:
eLife Sciences Publications
DOI:
10.1101/2022.07.04.498694
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