Past, present and future of turbid reefs in the Coral Triangle

Informations projet

4D_REEF

N° de convention de subvention: 813360

DOI

10.3030/813360

Projet clôturé

Date de signature de la CE 6 Mai 2019

Date de début 1 Septembre 2019

Date de fin 29 Février 2024

Financé au titre de

• EXCELLENT SCIENCE - Marie Skłodowska-Curie Actions

Coût total

€ 4 039 155,72

Contribution de l’UE

€ 4 039 155,72

Coordonné par

STICHTING NATURALIS BIODIVERSITY CENTER
Netherlands

CORDIS fournit des liens vers les livrables publics et les publications des projets HORIZON.

Les liens vers les livrables et les publications des projets du 7e PC, ainsi que les liens vers certains types de résultats spécifiques tels que les jeux de données et les logiciels, sont récupérés dynamiquement sur OpenAIRE .

Livrables

Other (4)

Each ESR has presented results at 2 international conferences

Scientific deliverable - Each ESR has presented results at 2 international conferences

Topical session at European Geoscience Union

D2 Topical session at the Asia Pacific Coral Reef Symposium

Award ceremony for best 3 minute video, blog entry, research paper, and visualisation

D4 Award ceremony for best 3 minute video, blog entry, research paper, and visualisation

Each ESR has published at least 2 blogs

D3 Each ESR has published at least 2 blogs

Open Research Data Pilot (1)

All datasets published in suitable repositories

Scientific deliverable - All datasets published in suitable repositories

Documents, reports (1)

Each ESR published at least 1 first authored and 2 co-authored publications

Scientific deliverable - Each ESR published at least 1 first authored and 2 co-authored publications

Websites, patent fillings, videos etc. (1)

4D-REEF website operative

The website for 4D-REEF website is in operation.

Publications

Peer reviewed articles (24)

High diversity of benthic cyanobacterial mats on coral reefs of Koh Tao, Gulf of Thailand

Auteurs: Stuij, T. M., Cleary, D. F., Gomes, N. C.M., Mehrotra, R., Visser, P. M., Speksnijder, A. G., and Hoeksema, B. W.
Publié dans: Coral Reefs, 2023, ISSN 0722-4028
Éditeur: Springer Verlag
DOI: 10.1007/s00338-022-02304-0

Single-Cell Genomics Reveals the Divergent Mitochondrial Genomes of Retaria (Foraminifera and Radiolaria)

Auteurs: Macher, J.-N., Coots, N.L., Poh, Y.-P., Girard, E.B., Langerak, A., Muñoz-Gómez, S.A., Sinha, S.D., Jirsová, D., Vos, R., Wissels, R., Gile, G.H., Renema, W., Wideman, J.G.
Publié dans: MBio, Numéro 14, 2023, Page(s) e0030223, ISSN 2150-7511
Éditeur: American Society for Microbiology
DOI: 10.1128/mbio.00302-23

Is the Coral Triangle’s future shown in a Pliocene reef gap?

Auteurs: Harrison, G.W.M., Santodomingo, N., Johnson, K.G. Renema, W.
Publié dans: Coral Reefs, Numéro 42, 2023, Page(s) 1219–1225, ISSN 1432-0975
Éditeur: Springer
DOI: 10.1007/s00338-023-02412-5

Exploring Prokaryotic Communities in the Guts and Mucus of Nudibranchs, and Their Similarity to Sediment and Seawater Microbiomes

Auteurs: Tamara Stuij, Daniel F. R. Cleary, Ana R. M. Polónia, Sumaitt Putchakarn, Ana C. C. Pires, Newton C. M. Gomes & Nicole J. de Voogd
Publié dans: Current Microbiology, Numéro 80, 2023, ISSN 0343-8651
Éditeur: Springer Verlag
DOI: 10.1007/s00284-023-03397-8

Impacts of humic substances, elevated temperature, and UVB radiation on bacterial communities of the marine sponge Chondrilla sp

Auteurs: Tamara M Stuij, Daniel F R Cleary, Rui J M Rocha, Ana R M Polónia, Davide A M Silva, Antonio Louvado, Nicole J de Voogd, Newton C M Gomes
Publié dans: FEMS Microbiology Ecology, Numéro 100/3, 2024, ISSN 0168-6496
Éditeur: Blackwell
DOI: 10.1093/femsec/fiae022

The hydrological cycle and ocean circulation of the Maritime Continent in the Pliocene: results from PlioMIP2

Auteurs: Ren, X., Lunt, D. J., Hendy, E., von der Heydt, A., Abe-Ouchi, A., Otto-Bliesner, B., Williams, C. J. R., Stepanek, C., Guo, C., Chandan, D., Lohmann, G., Tindall, J. C., Sohl, L. E., Chandler, M. A., Kageyama, M., Baatsen, M. L. J., Tan, N., Zhang, Q., Feng, R., Hunter, S., Chan, W.-L., Peltier, W. R., Li, X., Kamae, Y., Zhang, Z., and Haywood, A. M.
Publié dans: Climate of the Past, Numéro 19, 2023, Page(s) 2053-2077, ISSN 1814-9332
Éditeur: Gottingen Copernicus Publishers
DOI: 10.5194/cp-19-2053-2023,2023

Dynamics of large benthic foraminiferal assemblages: A tool to foreshadow reef degradation?

Auteurs: Girard, E.B., Estradivari, Ferse, S., Ambo-Rappe, R., Jompa, J., Renema, W.
Publié dans: Science of the Total Environment, Numéro 811, 2022, Page(s) 151396, ISSN 1879-1026
Éditeur: Elsevier
DOI: 10.1016/j.scitotenv.2021.151396

Limited Progress in Improving Gender and Geographic Representation in Coral Reef Science

Auteurs: Gabby N. Ahmadia, Samantha H. Cheng, Dominic A. Andradi-Brown, Stacy K. Baez, Megan D. Barnes, Nathan J. Bennett, Stuart J. Campbell, Emily S. Darling, Estradivari, David Gill, Erika Gress, Georgina G. Gurney, Vera Horigue, Raymond Jakub, Emma V. Kennedy, Shauna L. Mahajan, Sangeeta Mangubhai, Shayle B. Matsuda, Nyawira A. Muthiga, Michael O. Navarro, Nadia Santodomingo, Henri Vallès, Laura Veve
Publié dans: Frontiers in Marine Science, Numéro 8, 2021, ISSN 2296-7745
Éditeur: Frontiers Media
DOI: 10.3389/fmars.2021.731037

Seeing the Forest for the Trees: Mapping Cover and Counting Trees from Aerial Images of a Mangrove Forest Using Artificial Intelligence

Auteurs: Schürholz D, Castellanos-Galindo GA, Casella E, Mejía-Rentería JC, Chennu A
Publié dans: Remote Sensing, Numéro 15, 2023, Page(s) 3334, ISSN 2072-4292
Éditeur: Multidisciplinary Digital Publishing Institute (MDPI)
DOI: 10.3390/rs15133334

Hynes, M.G., O’Dea, A., Webster, J.M. and Renema, W., 2024. RADReef: A global Holocene Reef Rate of Accretion Dataset. Scientific Data, 11(1), p.398.

Auteurs: Hynes, M.G., O’Dea, A., Webster, J.M. and Renema, W
Publié dans: Scientific Data, Numéro 11, 2024, Page(s) 398, ISSN 2052-4463
Éditeur: Springer
DOI: 10.1038/s41597-024-03228-w

Watching out for coral reefs with forams

Auteurs: Elsa B Girard Willem Renema
Publié dans: Frontiers for Young Minds, Numéro 12, 2024, Page(s) 1122119, ISSN 2296-6846
Éditeur: Frontiers
DOI: 10.3389/frym.2024.1122119

Marine conservation beyond MPAs: Towards the recognition of other effective area-based conservation measures (OECMs) in Indonesia.

Auteurs: Estradivari, Agung, Muh Firdaus Adhuri, Dedi Supriadi Ferse, Sebastian C. A. Sualia, Ita Andradi-Brown, Dominic A. Campbell, Stuart J. Iqbal, Mohamad Jonas, Harry D. Lazuardi, Muhammad Erdi Nanlohy, Hellen Pakiding, Fitryanti Pusparini, Ni Kadek Sri Ramadhana, Hikmah C. Ruchimat, Toni Santiadji, I. Wayan Veda Timisela, Natelda R. Veverka, Laura Ahmadia, Gabby N.
Publié dans: Marine Policy, Numéro 137, 2022, Page(s) 104939, ISSN 0308-597X
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.marpol.2021.104939

First report of mitochondrial COI in foraminifera and implications for DNA barcoding

Auteurs: Macher, J.-N., Wideman, J.G., Girard, E.B., Langerak, A., Duijm, E., Jompa, J., Sadekov, A., Vos, R., Wissels, R., Renema, W., 2021. First report of mitochondrial COI in foraminifera and implications for DNA barcoding. Sci. Rep. 11, 1–9.
Publié dans: Scientific Reports, Numéro 11, 2021, Page(s) 1-9, ISSN 2045-2322
Éditeur: Nature Publishing Group
DOI: 10.1038/s41598-021-01589-5

Cryptic Diversity of Mediterranean <scp><i>Neogoniolithon</i></scp> (Corallinales, Corallinophycidae, Rhodophyta)

Auteurs: Dino Angelo E. Ramos, Jesús Del Río, Julio Peñas, Viviana Peña, Juan C. Braga
Publié dans: Aquatic Conservation: Marine and Freshwater Ecosystems, Numéro 34, 2024, ISSN 1052-7613
Éditeur: John Wiley & Sons Inc.
DOI: 10.1002/aqc.4255

Mitochondrial cytochrome c oxidase subunit I (COI) metabarcoding of Foraminifera communities using taxon-specific primers.

Auteurs: Macher, J.-N., Bloska, D.M., Holzmann, M., Girard, E.B., Pawlowski, J., Renema, W
Publié dans: PeerJ, 2022, Page(s) e13952, ISSN 2689-7733
Éditeur: PeerJ publishing
DOI: 10.7717/peerj.13952

Simulation of the mid-Pliocene Warm Period using HadGEM3: experimental design and results from model–model and model–data comparison

Auteurs: Charles J. R. Williams, Alistair A. Sellar, Xin Ren, Alan M. Haywood, Peter Hopcroft, Stephen J. Hunter, William H. G. Roberts, Robin S. Smith, Emma J. Stone, Julia C. Tindall, Daniel J. Lunt
Publié dans: Climate of the Past, Numéro 17/5, 2021, Page(s) 2139-2163, ISSN 1814-9332
Éditeur: European Geosciences Union
DOI: 10.5194/cp-17-2139-2021

A standardized database of Last Interglacial (MIS 5e) sea-level indicators in Southeast Asia

Auteurs: Kathrine Maxwell, Hildegard Westphal, Alessio Rovere
Publié dans: Earth System Science Data, Numéro 13/9, 2021, Page(s) 4313-4329, ISSN 1866-3516
Éditeur: Copernicus Publications
DOI: 10.5194/essd-13-4313-2021

The rapid expansion of Indonesia's marine protected area requires improvement in management effectiveness

Auteurs: Amkieltiela, Handayani CN, Andradi-Brown DA, Estradivari, Ford AK, Berger M, Hakim A, Muenzel DK, Carter E, Agung F, Veverka L, Iqbal M, Lazuardi ME, Fauzi MN, Tranter SN, Ahmadia GN.
Publié dans: Marine Policy, 2022, Page(s) 105257, ISSN 0308-597X
Éditeur: Pergamon Press Ltd.
DOI: 10.1016/j.marpol.2022.105257

Mitochondrial Cytochrome Oxidase Subunit 1: A Promising Molecular Marker for Species Identification in Foraminifera

Auteurs: Girard, E.B., Langerak, A., Jompa, J., Wangensteen, O.S., Macher, J.-N., Renema, W
Publié dans: Frontiers in Marine Science, Numéro 9, 2022, Page(s) 809659, ISSN 2296-7745
Éditeur: Frontiers
DOI: 10.3389/fmars.2022.809659

Digitizing the coral reef: Machine learning of underwater spectral images enables dense taxonomic mapping of benthic habitats

Auteurs: Schürholz, D., & Chennu, A.
Publié dans: Methods in Ecology and Evolution, Numéro 14, 2023, Page(s) 596–613, ISSN 2041-210X
Éditeur: John Wiley and Sons Inc.
DOI: 10.1111/2041-210x.14029

The Punta de la Mona Rhodolith Bed: Shallow-Water Mediterranean Rhodoliths (Almuñecar, Granada, Southern Spain)

Auteurs: Del Río J, Ramos DA, Sánchez-Tocino L, Peñas J and Braga JC
Publié dans: Frontiers in Earth Sciences, Numéro 10:884685, 2022, ISSN 2296-6463
Éditeur: Frontiers Media SA
DOI: 10.3389/feart.2022.884685

Rutterford, A., Bertini, L., Hendy, E. J., Johnson, K. G., Summerfield, R., & Burghardt, T. (2022). Towards the analysis of coral skeletal density-banding using deep learning. SN Applied Sciences, 4(2), 38

Auteurs: Rutterford, A., Bertini, L., Hendy, E. J., Johnson, K. G., Summerfield, R., & Burghardt, T.
Publié dans: SN Applied Sciences, Numéro 42, 2022, Page(s) 38, ISSN 2523-3971
Éditeur: Springer
DOI: 10.1007/s42452-021-04912-x

The annelid community of a natural deep-sea whale fall off eastern Australia

Auteurs: Georgieva, M.N., Wiklund, H., Ramos, D.A., Neal, L., Glasby, C.J., Gunton, L.M.
Publié dans: Records of the Australian Museum, Numéro 75, 2023, Page(s) 167-213, ISSN 2201-4349
Éditeur: Australian Museum
DOI: 10.3853/j.2201-4349.75.2023.1800

COI metabarcoding of large benthic Foraminifera: Method validation for application in ecological studies

Auteurs: Girard, E.B., Macher, J.-N., Jompa, J., Renema, W.
Publié dans: Ecology and Evolution, Numéro 12, 2022, Page(s) e9549, ISSN 2045-7758
Éditeur: John Wiley and Sons Ltd
DOI: 10.1002/ece3.9549

Other (1)

Quaternary coral, coralline algal and vermetid assemblages as sea-level indicators: a review

Auteurs: Juan C. Braga, Marc Humblet, Dino Angelo E. Ramos, Belinda Dechnik, Jody M. Webster
Publié dans: Coral Reefs and Sea-Level Change: Quaternary Records and Modelling, 2022, Page(s) 1-38, ISBN 978-1-7398845-1-2
Éditeur: IAS
DOI: 10.54780/iassp49/01