Deliverables
Report detailing the communication channels, such as the website and social media accounts
Report detailing project visuals and messaging plaforms
Publications
Author(s): Vítor Pereira, Miguel Rocha
Published in: Practical Applications of Computational Biology & Bioinformatics, 15th International Conference (PACBB 2021), 2021, ISBN 978-3-030-86257-2
Publisher: Springer
DOI: 10.1007/978-3-030-86258-9_16
Author(s): Fernando Cruz, Diogo Lima, José P. Faria, Miguel Rocha, Oscar Dias
Published in: Practical Applications of Computational Biology and Bioinformatics, 13th International Conference, 1005, 2020, Page(s) 173-181, ISBN 978-3-030-23872-8
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-23873-5_21
Author(s): João Correia, Tiago Resende, Delora Baptista, Miguel Rocha
Published in: Practical Applications of Computational Biology and Bioinformatics, 13th International Conference, 1005, 2020, Page(s) 164-172, ISBN 978-3-030-23872-8
Publisher: Springer International Publishing
DOI: 10.1007/978-3-030-23873-5_20
Author(s): Pablo Carbonell
Published in: New Frontiers and Applications of Synthetic Biology, 2022, Page(s) 205-214, ISBN 978-0-12-824469-2
Publisher: Academic Press
DOI: 10.1016/b978-0-12-824469-2.00024-5
Author(s): Tiago J. C. Sousa; João Correia; Vitor Pereira; Miguel Rocha
Published in: Applications of Evolutionary Computation, 24th International Conference, EvoApplications 2021, Held as Part of EvoStar 2021, Virtual Event, April 7–9, 2021, Proceedings, 2021, Page(s) 81-96, ISBN 978-3-030-72699-7
Publisher: Springer
DOI: 10.1007/978-3-030-72699-7_6
Author(s): Maria Guadalupe Camarena; Yadira Boada; Jesús Picó; Pablo Carbonell
Published in: Actas de las Jornadas de Automática, yearly, 2021, ISBN 978-84-9749-804-3
Publisher: CEA-IFAC
DOI: 10.17979/spudc.9788497498043.485
Author(s): Daniel R. Weilandt, Pierre Salvy, Maria Masid, Georgios Fengos, Robin Denhardt-Erikson, Zhaleh Hosseini, Vassily Hatzimanikatis
Published in: bioRxiv, 2022, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2022.01.17.476618
Author(s): María Camarena, Pablo Carbonell
Published in: bioRxiv, 2021, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.09.09.459461
Author(s): Anastasia Sveshnikova, Homa MohammadiPeyhani, Vassily Hatzimanikatis
Published in: bioRxiv, 2021, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.12.06.471405
Author(s): Homa Mohammadi-Peyhani, Jasmin Hafner, Anastasia Sveshnikova, Victor Viterbo, Vassily Hatzimanikatis
Published in: bioRxiv, 2021, ISSN 2692-8205
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.02.17.431583
Author(s): Omid Oftadeh, Pierre Salvy, Maria Masid, Maxime Curvat, Ljubisa Miskovic & Vassily Hatzimanikatis
Published in: Nature Communications, 12, 2021, Page(s) 4790, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-021-25158-6
Author(s): Margarida Saramago; Cátia Bárria; Vanessa G. Costa; Caio S. Souza; Sandra C. Viegas; Susana Domingues; Diana Lousa; Cláudio M. Soares; Cecília M. Arraiano; Rute G. Matos
Published in: The Febs Journal, 1, 2021, ISSN 1742-464X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/febs.15815
Author(s): Mahsa Babaei; Gheorghe Manuel Borja Zamfir; Xiao Chen; Hanne Bjerre Christensen; Mette Kristensen; Jens Nielsen; Jens Nielsen; Irina Borodina
Published in: ACS Synthetic Biology, 6, 2020, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.0c00048
Author(s): Tiago J. C. Sousa; João Correia; Vitor Pereira; Miguel Rocha
Published in: Journal of Chemical Information and Modeling, 61 (11), 2021, Page(s) 5343–5361, ISSN 1549-9596
Publisher: American Chemical Society
DOI: 10.1021/acs.jcim.0c01496
Author(s): Mark S Dunstan, Christopher J Robinson, Adrian J Jervis, Cunyu Yan, Pablo Carbonell, Katherine A Hollywood, Andrew Currin, Neil Swainston, Rosalind Le Feuvre, Jason Micklefield, Jean-Loup Faulon, Rainer Breitling, Nicholas Turner, Eriko Takano, Nigel S Scrutton
Published in: Synthetic Biology, 5 (1), 2020, ISSN 2397-7000
Publisher: Oxford University Press
DOI: 10.1093/synbio/ysaa012
Author(s): Guokun Wang; Guokun Wang; Aline Tavares; Simone Schmitz; Simone Schmitz; Lucas Gabriel Souza França; Hugo Almeida; João Cavalheiro; Ana Carolas; Süleyman Øzmerih; Lars M. Blank; Bruno Sommer Ferreira; Irina Borodina
Published in: Biotechnology and Bioengineering, 7, 2021, ISSN 0006-3592
Publisher: Wiley - V C H Verlag GmbbH & Co.
DOI: 10.1002/bit.27992
Author(s): Javier Sáez-Sáez; Guokun Wang; Eko Roy Marella; Suresh Sudarsan; Marc Cernuda Pastor; Irina Borodina
Published in: Metabolic Engineering, 2020, ISSN 1096-7176
Publisher: Academic Press
DOI: 10.1016/j.ymben.2020.08.009
Author(s): Irene Otero-Muras, Pablo Carbonell
Published in: Metabolic Engineering, 63, 2020, Page(s) 61-80, ISSN 1096-7176
Publisher: Academic Press
DOI: 10.1016/j.ymben.2020.11.012
Author(s): Carlos Costa; Iben Møller-Hansen; Aloia Romaní; José A. Teixeira; Irina Borodina; Lucília Domingues
Published in: ACS Synthetic Biology, 6, 2021, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.1c00120
Author(s): Vítor Vieira, Paulo Maia, Miguel Rocha, Isabel Rocha
Published in: BMC Bioinformatics, 20/1, 2019, ISSN 1471-2105
Publisher: BioMed Central
DOI: 10.1186/s12859-019-2934-y
Author(s): Christopher J. Robinson, Pablo Carbonell, Adrian J. Jervis, Cunyu Yan, Katherine A. Hollywood, Mark S. Dunstan, Andrew Currin, Neil Swainston, Reynard Spiess, Sandra Taylor, Paul Mulherin, Steven Parker, William Rowe, Nicholas E. Matthews, Kirk J. Malone, Rosalind Le Feuvre, Philip Shapira, Perdita Barran, Nicholas J. Turner, Jason Micklefield, Rainer Breitling, Eriko Takano, Nigel S. Scrutton
Published in: Metabolic Engineering, 60, 2020, Page(s) 168-182, ISSN 1096-7176
Publisher: Academic Press
DOI: 10.1016/j.ymben.2020.04.008
Author(s): N. Milne, P. Thomsen, N. Mølgaard Knudsen, P. Rubaszka, M. Kristensen, I. Borodina
Published in: Metabolic Engineering, 60, 2020, Page(s) 25-36, ISSN 1096-7176
Publisher: Academic Press
DOI: 10.1016/j.ymben.2019.12.007
Author(s): Gheorghe M. Borja, Angelica Rodriguez, Kate Campbell, Irina Borodina, Yun Chen, Jens Nielsen
Published in: Microbial Cell Factories, 18/1, 2019, ISSN 1475-2859
Publisher: BioMed Central
DOI: 10.1186/s12934-019-1244-4
Author(s): Vítor Vieira, Miguel Rocha
Published in: Bioinformatics, 35/24, 2019, Page(s) 5361-5362, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btz598
Author(s): Lewis Grozinger, Martyn Amos, Thomas E. Gorochowski, Pablo Carbonell, Diego A. Oyarzún, Ruud Stoof, Harold Fellermann, Paolo Zuliani, Huseyin Tas, Angel Goñi-Moreno
Published in: Nature Communications, 10/1, 2019, ISSN 2041-1723
Publisher: Nature Publishing Group
DOI: 10.1038/s41467-019-13232-z
Author(s): Francesco Del Carratore, Kamila Schmidt, Maria Vinaixa, Katherine A. Hollywood, Caitlin Greenland-Bews, Eriko Takano, Simon Rogers, Rainer Breitling
Published in: Analytical Chemistry, 91/20, 2019, Page(s) 12799-12807, ISSN 0003-2700
Publisher: American Chemical Society
DOI: 10.1021/acs.analchem.9b02354
Author(s): Andrew Currin, Neil Swainston, Mark S Dunstan, Adrian J Jervis, Paul Mulherin, Christopher J Robinson, Sandra Taylor, Pablo Carbonell, Katherine A Hollywood, Cunyu Yan, Eriko Takano, Nigel S Scrutton, Rainer Breitling
Published in: Synthetic Biology, 2019, ISSN 2397-7000
Publisher: Oxford University Press
DOI: 10.1093/synbio/ysz025
Author(s): Pablo Carbonell, Jean-Loup Faulon, Rainer Breitling
Published in: IFAC-PapersOnLine, 52/26, 2019, Page(s) 7-12, ISSN 2405-8963
Publisher: Elsevier
DOI: 10.1016/j.ifacol.2019.12.228
Author(s): Pablo Carbonell; Pablo Carbonell; Rosalind Le Feuvre; Eriko Takano; Nigel S. Scrutton
Published in: Synthetic Biology, 5 (1), 2020, Page(s) ysaa020, ISSN 2397-7000
Publisher: Oxford University Press
DOI: 10.1093/synbio/ysaa020
Author(s): Guokun Wang; Douglas B. Kell; Irina Borodina
Published in: Essays in Biochemistry, 2021, ISSN 0071-1365
Publisher: Portland Press, Ltd.
DOI: 10.1042/ebc20200137
Author(s): Jasmin Hafner, Homa MohammadiPeyhani, Anastasia Sveshnikova, Alan Scheidegger, and Vassily Hatzimanikatis
Published in: ACS Synthetic Biology, 9 (6), 2020, Page(s) 1479-1482, ISSN 2161-5063
Publisher: American Chemical Society
DOI: 10.1021/acssynbio.0c00052
Author(s): Vítor Pereira, Fernando Cruz, Miguel Rocha
Published in: Bioinformatics, 37 (16), 2021, Page(s) 2494-2496, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btab013
Author(s): Mahsa Babaei; Luisa Sartori; Alexey Karpukhin; Dmitrii Abashkin; Elena Matrosova; Irina Borodina
Published in: FEMS Yeast Research, 3, 2021, ISSN 1567-1356
Publisher: Blackwell
DOI: 10.1093/femsyr/foab027
Author(s): Weilandt, Daniel Robert
Published in: 2020
Publisher: EPFL
DOI: 10.5075/epfl-thesis-7900
Datasets
Author(s): Choudhury, Subham; Moret, Michael; Salvy, Pierre; Weilandt, Daniel; Hatzimanikatis, Vassily; Miskovic, Ljubisa
Published in: Zenodo
Author(s): Choudhury, Subham; Moret, Michael; Salvy, Pierre; Weilandt, Daniel; Hatzimanikatis, Vassily; Miskovic, Ljubisa
Published in: Zenodo
Author(s): Choudhury, Subham; Moret, Michael; Salvy, Pierre; Weilandt, Daniel; Hatzimanikatis, Vassily; Miskovic, Ljubisa
Published in: Zenodo
Author(s): Oftadeh Omid; Salvy Pierre; Masid Maria; Curvat Maxime; Miskovic Ljubisa; Hatzimanikatis Vassily
Published in: Zenodo
Software
Author(s): Oftadeh, Omid; Salvy, Pierre; Masid, Maria; Curvat, Maxime; Miskovic, Ljubisa; Hatzimanikatis, Vassily
DOI: 10.5281/zenodo.5095273; 10.5281/zenodo.5095272
Publisher: Zenodo