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Exploring the Epigenome by Multiplexed Physical Mapping of Individual Chromosomes

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Dam Assisted Fluorescent Tagging of Chromatin Accessibility (DAFCA) for Optical Genome Mapping in Nanochannel Arrays

Author(s): Gil Nifker; Assaf Grunwald; Sapir Margalit; Zuzana Tulpova; Yael Michaeli; Hagai Har-Gil; Noy Maimon; Elad Roichman; Leonie Schütz; Elmar Weinhold; Yuval Ebenstein
Published in: ACS nano 17(10), 9178-9187 (2023). doi:10.1021/acsnano.2c12755, Issue 4, 2023, ISSN 1936-0851
Publisher: American Chemical Society
DOI: 10.1021/acsnano.2c12755

Multimodal single-molecule microscopy with continuously controlled spectral resolution

Author(s): Jonathan Jeffet; Ariel Ionescu; Yael Michaeli; Dmitry Torchinsky; Eran Perlson; Timothy D. Craggs; Yuval Ebenstein
Published in: Biophysical Journal, Issue 1, 2021, ISSN 2667-0747
Publisher: Elsevier BV
DOI: 10.1016/j.bpr.2021.100013

From single-molecule to genome-wide mapping of DNA lesions: repair-assisted damage detection sequencing

Author(s): Noa Gilat, Dena Fridman, Hila Sharim, Sapir Margalit, Natalie R. Gassman, Yael Michaeli, Yuval Ebenstein
Published in: Biophysical Reports, 2021, ISSN 2667-0747
Publisher: The Biophysical Society
DOI: 10.1016/j.bpr.2021.100017

Long reads capture simultaneous enhancer-promoter methylation status for cell-type deconvolution

Author(s): Sapir Margalit, Yotam Abramson, Hila Sharim, Zohar Manber, Surajit Bhattacharya, Yi-Wen Chen, Eric Vilain, Hayk Barseghyan, Ran Elkon, Roded Sharan, Yuval Ebenstein
Published in: Bioinformatics, 2021, ISSN 1367-4803
Publisher: Oxford University Press
DOI: 10.1093/bioinformatics/btab306

Chemo-Enzymatic Fluorescence Labeling Of Genomic DNA For Simultaneous Detection Of Global 5-Methylcytosine And 5-Hydroxymethylcytosine

Author(s): Sigal Avraham, Dr. Leonie Schütz, Dr. Larissa Käver, Dr. Andreas Dankers, Sapir Margalit, Dr. Yael Michaeli, Dr. Shahar Zirkin, Dr. Dmitry Torchinsky, Dr. Noa Gilat, Omer Bahr, Gil Nifker, Prof. Maya Koren-Michowitz, Prof. Elmar Weinhold, Prof. Yuval Ebenstein
Published in: ChemBioChem, 2023, Page(s) e202300400, ISSN 1439-7633
Publisher: Wiley-VCH
DOI: 10.1002/cbic.202300400

Machine-Learning-Based Single-Molecule Quantification of Circulating MicroRNA Mixtures

Author(s): Jonathan Jeffet; Sayan Mondal; Amit Federbush; Nadav Tenenboim; Miriam Neaman; Jasline Deek; Yuval Ebenstein; Yohai Bar-Sinai
Published in: Crossref, Issue 1, 2023, ISSN 0002-7863
Publisher: American Chemical Society
DOI: 10.1021/acssensors.3c01234

Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping

Author(s): Tslil Gabrieli, Yael Michaeli, Sigal Avraham, Dmitry Torchinsky, Sapir Margalit, Leonie Schutz, Matyas Juhasz, Ceyda Coruh, Nissim Arbib, Zhaohui Sunny Zhou, Julie A. Law, Elmar Weinhold and Yuval Ebenstein
Published in: Nucleic Acids Research, 2022, ISSN 1362-4962
Publisher: Oxford University Press
DOI: 10.1093/nar/gkac460

Single-molecule optical genome mapping in nanochannels: multidisciplinarity at the nanoscale

Author(s): Jonathan Jeffet, Sapir Margalit, Yael Michaeli, Yuval Ebenstein
Published in: Essays in Biochemistry, Issue 65/1, 2021, Page(s) 51-66, ISSN 0071-1365
Publisher: Portland Press, Ltd.
DOI: 10.1042/ebc20200021

Effective training of nanopore callers for epigenetic marks with limited labelled data

Author(s): Brian Yao, Chloe Hsu, Gal Goldner, Yael Michaeli, Yuval Ebenstein and Jennifer Listgarten
Published in: Open Biology, 2024, ISSN 2046-2441
Publisher: Royal Society Publishing
DOI: 10.1098/rsob.230449

Single-molecule approaches for DNA damage detection and repair: A focus on Repair Assisted Damage Detection (RADD)

Author(s): Tahir Detinis Zur; Jasline Deek; Yuval Ebenstein
Published in: Crossref, Issue 3, 2023, ISSN 1568-7864
Publisher: Elsevier BV
DOI: 10.1016/j.dnarep.2023.103533

Nanopore callers for epigenetics from limited supervised data

Author(s): Yao B; Chloe Ching-Yun Hsu; Goldner G; Yael Michaeli; Yuval Ebenstein; Jennifer Listgarten
Published in: Issue 1, 2021
Publisher: Cold Spring Harbor Laboratory
DOI: 10.1101/2021.06.17.448800

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