Resultado final
An initial demonstrator of the platform infrastructure will be delivered, for further development and optimisation throughout the project.
Recommended metadata standards and portal prototypeStandards for data descriptions across datasets and data types and a first implementation of the iPC interface
An assembly of key molecular interactions that define cancer types and subtypes as well as the positioning of patients and tumours according to their molecular similarity
Adaptation of MelanomaMine and LiMTox to the analysis of paediatric cancers and application to biomedical publications on paediatric cancersExtraction of relationships between molecules and bioentities from the publicly available paediatric literature
Application of software enabling computational deconvolution of bulk RNA-sequencing data to immune cell profiles of patient samplesThe generation of a celllevel map of the environment and composition of each tumour with a particular focus on immune cells
Identification of important regulatory elements using multi-level matrix factorization approachesMasterregulator analysis to identify key genes and pathways whose dysregulation contribute to tumour genesis and proliferation
Synthetic data for testing and training patient, cancer, and drug modelsSynthetic datasets will be assembled and distributed to modeling WPs for model construction training and testing
Collection of high-quality clinical and molecular paediatric cancer datasets, as well as other tumour typesDatasets identified will be listed and accessible and shared with WP38 for training and validating models
Collection of molecular-interaction data from high-throughput assays, perturbation and essentiality assays, molecular data and clinical annotations from ongoing and past clinical trialsA comprehensive collection and analyses of curated data and molecular assays sourced from large-scale experiments and databases.
Data-driven model for molecular targets and drug repositioningReport on the developed software implemented in R and integrated into the iPCCP that can generate a list of small molecules and siRNAs with a potential therapeutic benefit based on omics data
Integration of INtERAcT, MelanomaMine and LiMTox and application to biomedical publications on paediatric cancersCombination of 3 different NLP approaches for the analysis of unstructured data and application to specialised paediatric publications
Project quality planA handbook of the project management process, review process, quality checks, meeting organisation, which is communicated to all partners.
A cloudbased platform integrated into the project data portal allowing to visualize the networks built by the consortium and visualize omics profiles from the data portal on top of them
Internal and external IT communication infrastructure and project websiteThis deliverable constitutes the launch of the internal iPC communication infrastructure including the establishment of mailing lists, a subversion repository server and the iPC website.
Publicaciones
Autores:
Captier, Nicolas; Merlevede, Jane; Molkenov, Askhat; Seisenova, Ainur; Zhubanchaliyev, Altynbek; Nazarov, Petr V.; Barillot, Emmanuel; Kairov, Ulykbek; Zinovyev, Andrei
Publicado en:
Bioinformatics, Volume 38, Edición 10, 2022, Página(s) 2963–2964, ISSN 1367-4803
Editor:
Oxford University Press
DOI:
10.1093/bioinformatics/btac204
Autores:
Paola Stolfi & Filippo Castiglione
Publicado en:
BMC Bioinformatics, Edición 22, Article number: 483 (2021), 2021, ISSN 1471-2105
Editor:
BioMed Central
DOI:
10.1186/s12859-021-04354-7
Autores:
Didier Surdez, Sakina Zaidi, Sandrine Grossetête, Karine Laud-Duval, Anna Sole Ferre, Lieke Mous, Thomas Vourc'h, Franck Tirode, Gaelle Pierron, Virginie Raynal, Sylvain Baulande, Erika Brunet, Véronique Hill, Olivier Delattre
Publicado en:
Cancer Cell, Edición 39/6, 2021, Página(s) 810-826.e9, ISSN 1535-6108
Editor:
Cell Press
DOI:
10.1016/j.ccell.2021.04.001
Autores:
Martin F. Orth, Didier Surdez, Tobias Faehling, Anna C. Ehlers, Aruna Marchetto, Sandrine Grossetête, Richard Volckmann, Danny A. Zwijnenburg, Julia S. Gerke, Sakina Zaidi, Javier Alonso, Ana Sastre, Sylvain Baulande, Martin Sill, Florencia Cidre-Aranaz, Shunya Ohmura, Thomas Kirchner, Stefanie M. Hauck, Eva Reischl, Melissa Gymrek, Stefan M. Pfister, Konstantin Strauch, Jan Koster, Olivier Delat
Publicado en:
Cell Reports, 2022, ISSN 2211-1247
Editor:
Cell Press
DOI:
10.1016/j.celrep.2022.111761
Autores:
Pavel Sumazin, Dolores H. López-Terrada
Publicado en:
Journal of Hepatology, 2021, ISSN 0168-8278
Editor:
Elsevier BV
DOI:
10.1101/2021.07.15.445600
Autores:
Pietro Di Lena, Claudia Sala, Christine Nardini
Publicado en:
Nucleic Acids Research, 2021, ISSN 0305-1048
Editor:
Oxford University Press
DOI:
10.1093/nar/gkab426
Autores:
Mario Failli, Salih Demir, Álvaro Del Río-Álvarez, Juan Carrillo-Reixach, Laura Royo, Montserrat Domingo-Sàbat, Margaret Childs, Rudolf Maibach, Rita Alaggio, Piotr Czauderna, Bruce Morland, Sophie Branchereau, Stefano Cairo, Roland Kappler, Carolina Armengol, Diego di Bernardo
Publicado en:
Hepatology, 2023, ISSN 0270-9139
Editor:
John Wiley & Sons Inc.
DOI:
10.1097/hep.0000000000000601
Autores:
Matteo Manica, Charlotte Bunne, Roland Mathis, Joris Cadow, Mehmet Eren Ahsen, Gustavo A Stolovitzky, María Rodríguez Martínez
Publicado en:
Bioinformatics, 2020, ISSN 1367-4803
Editor:
Oxford University Press
DOI:
10.1093/bioinformatics/btaa942
Autores:
Alex Clavería-Cabello, Jose Maria Herranz, Maria Ujue Latasa, Maria Arechederra, Iker Uriarte, Antonio Pineda-Lucena, Felipe Prosper, Pedro Berraondo, Cristina Alonso, Bruno Sangro, Jose Juan García Marin, Maria Luz Martinez-Chantar, Sergio Ciordia, Fernando José Corrales, Paola Francalanci, Rita Alaggio, Jessica Zucman-Rossi, Emilie Indersie, Stefano Cairo, Montserrat Domingo-Sàbat, Laura Zan
Publicado en:
Journal of Hepatology, 2023, ISSN 1600-0641
Editor:
EASL
DOI:
10.1016/j.jhep.2023.05.031
Autores:
An-Phi Nguyen; Stefania Vasilaki; María Rodríguez Martínez
Publicado en:
Briefings in Bioinformatics, 2023, ISSN 1477-4054
Editor:
Oxford University Press
DOI:
10.1093/bib/bbad056
Autores:
Gambardella G, Viscido G, Tumaini B, Isacchi A, Bosotti R, di Bernardo D
Publicado en:
Nature Communication, Edición 13, Article number: 1714 (2022), 2022, ISSN 2041-1723
Editor:
Nature Publishing Group
DOI:
10.1038/s41467-022-29358-6
Autores:
Emma L. Boys, Jia Liu, Phillip J Robinson, Roger R. Reddel
Publicado en:
Proteomics, 2022, ISSN 1615-9861
Editor:
John Wiley & Sons
DOI:
10.1002/pmic.202200238
Autores:
Judith Wienke, Lindy L. Visser, Waleed M. Kholosy, Kaylee M. Keller, Marta Barisa, Sophie Munnings-Tomes, Elizabeth Carlton, Evon Poon, Ana Rodriguez, Ronald Bernardi, Femke van den Ham, Sander R. van Hooff, Yvette A.H. Matser, Michelle L. Tas, Karin P.S. Langenberg, Philip Lijnzaad, Josephine G.M. Strijker, Alvaro Sanchez-Bernabeu, Annelisa M. Cornel, Frank C.P. Holstege, Juliet Gray, Lieve A.M.
Publicado en:
Cancer Cell, 2024, ISSN 1535-6108
Editor:
Cell Press
DOI:
10.1016/j.ccell.2023.12.008
Autores:
Enrico Santus, Nicola Marino, Davide Cirillo, Emmanuele Chersoni, Arnau Montagud, Antonella Santuccione Chadha, Alfonso Valencia, Kevin Hughes, Charlotta Lindvall
Publicado en:
Journal of Medical Internet Research, Edición 23/3, 2021, Página(s) e22453, ISSN 1438-8871
Editor:
Journal of medical Internet Research
DOI:
10.2196/22453
Autores:
Sunil Kumar, Xiao-Kang Lun, Bernd Bodenmiller, María Rodríguez Martínez & Heinz Koeppl
Publicado en:
Scientific Reports, Edición 10, Article number: 1233 (2020), 2020, ISSN 2045-2322
Editor:
Nature Publishing Group
DOI:
10.1038/s41598-019-56444-5
Autores:
Qian Li; Salih Demir, Álvaro Del Río-Álvarez; Rebecca Maxwell; Alexandra Wagner; Juan Carrillo-Reixach; Carolina Armengol; Christian Vokuhl; Beate Häberle; Dietrich von Schweinitz; Irene Schmid; Stefano Cairo; Roland Kappler
Publicado en:
Cancers, 2022, ISSN 2072-6694
Editor:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/cancers14174196
Autores:
Jannis Born, Greta Markert, Nikita Janakarajan, Talia Kimber, Andrea Volkamer, María Rodríguez Martíne, Matteo Manica
Publicado en:
Digital Discovery, 2023, ISSN 2635-098X
Editor:
Royal Society of Chemistry
DOI:
10.1039/d2dd00099g
Autores:
Jordi Abril-Fornaguera; Laura Torrens; Carmen Andreu-Oller; Juan Carrillo-Reixach; Alex Rialdi; Ugne Balaseviciute; Roser Pinyol; Carla Montironi; Philipp K. Haber; Álvaro Del Río-Álvarez; Montserrat Domingo-Sàbat; Laura Royo; Nicholas K. Akers; Catherine E. Willoughby; Judit Peix; Miguel Torres-Martin; Marc Puigvehi; Stefano Cairo; Margaret Childs; Rudolf Maibach; Rita Alaggio; Piotr Czaudern
Publicado en:
Molecular Cancer Therapeutics, 2023, ISSN 1535-7163
Editor:
American Association for Cancer Research
DOI:
10.1158/1535-7163.mct-22-0335
Autores:
Ling Tao,Myrthala Moreno-Smith,Rodrigo Ibarra-García-Padilla,Giorgio Milazzo,Nathan A. Drolet,Blanca E. Hernandez,Young S. Oh,Ivanshi Patel,Jean J. Kim,Barry Zorman,Tajhal Patel,Abu Hena Mostafa Kamal,Yanling Zhao,John Hicks,Sanjeev A. Vasudevan,Nagireddy Putluri,Cristian Coarfa,Pavel Sumazin,Giovanni Perini,Ronald J. Parchem,Rosa A. Uribe,Eveline Barbieri
Publicado en:
Advanced Science, 2021, Página(s) e2005047, ISSN 2198-3844
Editor:
Wiley
DOI:
10.1002/advs.202005047
Autores:
Dejan Štepec; Danijel Skočaj
Publicado en:
Uporabna informatika, Edición 1, 2021, ISSN 2630-435X
Editor:
Slovenian Society Informatika
DOI:
10.31449/upinf.136
Autores:
Michael R. Gerven; Eva Bozsaky; Yvette A. H. Matser; Julian Vosseberg; Sabine Taschner‐Mandl; Jan Koster; Godelieve A. M. Tytgat; Jan J. Molenaar; Marlinde Boogaard
Publicado en:
Cancer Science, Edición 4, 2022, ISSN 1349-7006
Editor:
John Wiley & Sons
DOI:
10.1111/cas.15363
Autores:
Andreas Dräger, Tomáš Helikar, Matteo Barberis, Marc Birtwistle, Laurence Calzone, Claudine Chaouiya, Jan Hasenauer, Jonathan R Karr, Anna Niarakis, María Rodríguez Martínez, Julio Saez-Rodriguez, Juilee Thakar
Publicado en:
Bioinformatics, Edición Volume 37, Edición 21, 1 November 2021, 2021, Página(s) 3702–3706, ISSN 1367-4803
Editor:
Oxford University Press
DOI:
10.1093/bioinformatics/btab229
Autores:
Florian Ingelfinger; Donatella De Feo; Burkhard Becher
Publicado en:
Seminars in Immunology, Edición Volume 56, August 2021, 2021, ISSN 1044-5323
Editor:
Academic Press
DOI:
10.1016/j.smim.2021.101518
Autores:
Elisa Zappa, Alice Vitali, Kathleen Anders, Jan J Molenaar, Judith Wienke, Annette Künkele
Publicado en:
European Journal of Cancer, 2023, ISSN 0959-8049
Editor:
Pergamon Press Ltd.
DOI:
10.1016/j.ejca.2023.113347
Autores:
Melania Franchini; Simona Pellecchia; Gaetano Viscido; Gennaro Gambardella
Publicado en:
NAR Genomics and Bioinformatics, Volume 5, Edición 1, March 2023,, 2023, ISSN 2631-9268
Editor:
Oxford University Press
DOI:
10.1093/nargab/lqad024
Autores:
Joris Cadow, Matteo Manica, Roland Mathis, Tiannan Guo, Ruedi Aebersold, María Rodríguez Martínez
Publicado en:
Bioinformatics, Edición Volume 37, Edición Supplement_1, July 2021, 2021, Página(s) i245–i253, ISSN 1367-4803
Editor:
Oxford University Press
DOI:
10.1093/bioinformatics/btab311
Autores:
Iker Núñez-Carpintero, Emily O'Connor, Maria Rigau, Mattia Bosio, Yoshiteru Azuma, Ana Topf, Rachel Thompson, Peter A.C. ’t Hoen, Teodora Chamova, Ivailo Tournev, Velina Guergueltcheva, Steven Laurie, Sergi Beltran, Salvador Capella, Davide Cirillo, Hanns Lochmüller, Alfonso Valencia
Publicado en:
Nature Communications, 2024, ISSN 2041-1723
Editor:
Nature Publishing Group
DOI:
10.1101/2023.01.19.524736
Autores:
Cobos, Francisco Avila; Panah, Mohammad Javad Najaf; Epps, Jessica; Long, Xiaochen; Man, Tsz-Kwong; Chiu, Hua-Sheng; Chomsky, Elad; Kiner, Evgeny; Krueger, Michael J.; di Bernado, Diego; Voloch, Luis; Molenaar, Jan; von Hooff, Sander R.; Westermann, Frank; Jansky, Selina; Redell, Michele L.; Mestdagh, Pieter; Sumazin, Pavel
Publicado en:
Genome Biology, 2023, ISSN 1474-760X
Editor:
Springer Nature
DOI:
10.1186/s13059-023-03016-6
Autores:
Emanuel Gonçalves, Rebecca C Poulos, Zhaoxiang Cai, Syd Barthorpe, Srikanth S Manda, Natasha Lucas, Alexandra Beck, Daniel Bucio-Noble, Michael Dausmann, Caitlin Hall, Michael Hecker, Jennifer Koh, Sadia Mahboob, Iman Mali, James Morris, Laura Richardson1, Akila J Seneviratne4, Erin Sykes4, Frances Thomas, Sara Valentini, Steven G Williams, Yangxiu Wu, Dylan Xavier, Karen L MacKenzie, Peter G Hai
Publicado en:
Cancer Cell, 2022, ISSN 1535-6108
Editor:
Cell Press
DOI:
10.1016/j.ccell.2022.06.010
Autores:
Sarah E. Woodfield, Yan Shi, Roma H. Patel, Zhenghu Chen, Aayushi P. Shah, Rohit K. Srivastava, Richard S. Whitlock, Aryana M. Ibarra, Samuel R. Larson, Stephen F. Sarabia, Andrew Badachhape, Zbigniew Starosolski, Ketan B. Ghaghada, Pavel Sumazin, D. Allen Annis, Dolores López-Terrada & Sanjeev A. Vasudevan
Publicado en:
scientific reports, Edición 11, Article number: 2967 (2021), 2021, ISSN 2045-2322
Editor:
Nature Publishing Group
DOI:
10.1038/s41598-021-82542-4
Autores:
Jasmin Bartl; Marco Zanini; Flavia Bernardi; Antoine Forget; Lena Blümel; Julie Talbot; Daniel Picard; Nan Qin; Gabriele Cancila; Qingsong Gao; Soumav Nath; Idriss Mahoungou Koumba; Marietta Wolter; François Kuonen; Maike Langini; Thomas Beez; Christopher Munoz; David Pauck; Viktoria Marquardt; Hua Yu; Judith Souphron; Mascha Korsch; Christina Mölders; Daniel Berger; Sarah Göbbels; Frauke-Doro
Publicado en:
Nature Communications, Edición 7, 2022, ISSN 2041-1723
Editor:
Nature Publishing Group
DOI:
10.1038/s41467-022-31574-z
Autores:
Rosa Hernansaiz-Ballesteros; Christian H. Holland; Aurelien Dugourd; Julio Saez-Rodriguez
Publicado en:
Bioinformatics, 2021, ISSN 1367-4803
Editor:
Oxford University Press
DOI:
10.5281/zenodo.5779097
Autores:
Myrthala Moreno-Smith, Giorgio Milazzo, Ling Tao, Baharan Fekry, Bokai Zhu, Mahmoud A. Mohammad, Simone Di Giacomo, Roshan Borkar, Karthik Reddy Kami Reddy, Mario Capasso, Sanjeev A. Vasudevan, Pavel Sumazin, John Hicks, Nagireddy Putluri, Giovanni Perini, Kristin Eckel-Mahan, Thomas P. Burris & Eveline Barbieri
Publicado en:
nature communications, Edición 12, Article number: 4006 (2021), 2021, ISSN 2041-1723
Editor:
Nature Publishing Group
DOI:
10.1038/s41467-021-24196-4
Autores:
Lucia Lorenzi; Hua-Sheng Chiu; Francisco Avila Cobos; Stephen Gross; Pieter-Jan Volders; Robrecht Cannoodt; Justine Nuytens; Katrien Vanderheyden; Jasper Anckaert; Steve Lefever; Aidan P. Tay; Eric J. de Bony; Wim Trypsteen; Fien Gysens; Marieke Vromman; Tine Goovaerts; Thomas Birkballe Hansen; Scott Kuersten; Nele Nijs; Tom Taghon; Karim Vermaelen; Ken R. Bracke; Yvan Saeys; T
Publicado en:
Nature Biotechnology, 2021, Página(s) 1453-1465, ISSN 1087-0156
Editor:
Nature Publishing Group
DOI:
10.5281/zenodo.5909808
Autores:
Srikanth S. Manda, Zainab Noor, Peter G. Hains, Qing Zhong
Publicado en:
Current Protocols, Edición 1/3, 2021, ISSN 2691-1299
Editor:
Current Protocols in Bioinformatics
DOI:
10.1002/cpz1.69
Autores:
David Corujo, Roberto Malinverni, Juan Carrillo-Reixach, Oliver Meers, Arce Garcia-Jaraquemada, Marguerite-Marie Le Pannérer, Vanesa Valero, Ainhoa Pérez, Álvaro Del Río-Álvarez, Laura Royo, Beatriz Pérez-González, Helena Raurell, Rafael D Acemel, José M Santos-Pereira, Marta Garrido-Pontnou, José Luis Gómez-Skarmeta, Lorenzo Pasquali, Josep Manyé, Carolina Armengol, Marcus Buschbeck
Publicado en:
Cell Reports, 2022, ISSN 2211-1247
Editor:
Cell Press
DOI:
10.1016/j.celrep.2022.110988
Autores:
Avila Cobos, Francisco; Alquicira-Hernandez, José; Powell, Joseph E.; Mestdagh, Pieter; De Preter, Katleen
Publicado en:
Nature Communications, Edición 1, 2020, ISSN 2041-1723
Editor:
Nature Publishing Group
DOI:
10.1038/s41467-020-19015-1
Autores:
Anna Niarakis, Juilee Thakar, Matteo Barberis, María Rodríguez Martínez, Tomáš Helikar, Marc Birtwistle, Claudine Chaouiya, Laurence Calzone, Andreas Dräger
Publicado en:
Bioinformatics, 2022, ISSN 1367-4803
Editor:
Oxford University Press
DOI:
10.1093/bioinformatics/btac609
Autores:
Jena V. Lilly, Jo Lynne Rokita, Jennifer L. Mason, Tatiana Patton, Stephanie Stefankiewiz, David Higgins, Gerri Trooskin, Carina A. Larouci, Kamnaa Arya, Elizabeth Appert, Allison P. Heath, Yuankun Zhu, Miguel A. Brown, Bo Zhang, Bailey K. Farrow, Shannon Robins, Allison M. Morgan, Thinh Q. Nguyen, Elizabeth Frenkel, Kaitlin Lehmann, Emily Drake, Catherine Sullivan, Alexa Plisiewicz, Noel Coleman,
Publicado en:
Neoplasia, 2022, ISSN 1522-8002
Editor:
Elsevier BV
DOI:
10.1016/j.neo.2022.100846
Autores:
Qing Zhong, Sun Rui, Adel T. Aref, Zainab Noor, Asim Anees, Yi Zhu, Natasha Lucas, Rebecca C. Poulos, Mengge Lyu, Tiansheng Zhu, Bo Wang, Guo-Bo Chen, Yingrui Wang, Xuan Ding, Dorothea Rutishauser, Niels J. Rupp, Jan H. Rueschoff, Cédric Poyet, Thomas Hermanns, Christian Fankhauser, María Rodríguez Martínez, Wenguang Shao, Marija Buljan, Janis Frederick Neumann, Andreas Beyer, Peter G. Hains,
Publicado en:
2023 Life Science Alliance LLC, February 2024 | Volume 7, No. 2, 2024, ISSN 2575-1077
Editor:
2023 Life Science Alliance LLC
DOI:
10.1101/2023.03.03.530910
Autores:
Gerda Kildisiute, Waleed M. Kholosy, Matthew D. Young, Kenny Roberts, Rasa Elmentaite, Sander R. van Hooff, Clarissa N. Pacyna, Eleonora Khabirova, Alice Piapi, Christine Thevanesan, Eva Bugallo-Blanco, Christina Burke, Lira Mamanova, Kaylee M. Keller, Karin P.S. Langenberg-Ververgaert, Philip Lijnzaad, Thanasis Margaritis, Frank C.P. Holstege, Michelle L. Tas, Marc H.W.A. Wijnen, Max M. van Noese
Publicado en:
Science Advances, Edición 7/6, 2021, Página(s) eabd3311, ISSN 2375-2548
Editor:
Science Advances
DOI:
10.1126/sciadv.abd3311
Autores:
Anubha Gupta; Shiv Gehlot; Shubham Goswami; Sachin Motwani; Ritu Gupta; Álvaro García Faura; Dejan Štepec; Tomaž Martinčič; Reza Azad; Dorit Merhof; Afshin Bozorgpour; Babak Azad; Alaa Sulaiman; Deepanshu Pandey; Pradyumna Gupta; Sumit Bhattacharya; Aman Sinha; Rohit Agarwal; Xinyun Qiu; Yucheng Zhang; Ming Fan; Yoonbeom Park; Daehong Lee; Joon Sik Park; Kwangyeol Lee; Jaehyung Ye
Publicado en:
Medical Image Analysis, Edición 1, 2022, ISSN 1361-8415
Editor:
Elsevier BV
DOI:
10.1016/j.media.2022.102677
Autores:
Carolina Armengol, Stefano Cairo, Roland Kappler
Publicado en:
Hepatoma Research, 2021, ISSN 2454-2520
Editor:
HEPATOMA RESEARCH
DOI:
10.20517/2394-5079.2021.19
Autores:
Clémentine Decamps, Alexis Arnaud, Florent Petitprez, Mira Ayadi, Aurélia Baurès, Lucile Armenoult, HADACA consortium, Sergio Escalera, Isabelle Guyon, Rémy Nicolle, Richard Tomasini, Aurélien de Reyniès, Jérôme Cros, Yuna Blum & Magali Richard
Publicado en:
BMC Bioinformatics, Edición 22, Article number: 473 (2021), 2021, ISSN 1471-2105
Editor:
BioMed Central
DOI:
10.1186/s12859-021-04381-4
Autores:
Ling Tao, Mahmoud A. Mohammad, Giorgio Milazzo, Myrthala Moreno-Smith, Tajhal Patel, Barry Zorman, Andrew Badachhape, Blanca E. Hernandez, Amber B. Wolf, Zihua Zeng, Jennifer H. Foster, Sara Aloisi, Pavel Sumazin, Youli Zu, John Hicks, Ketan B. Ghaghada, Nagireddy Putluri, Giovanni Perini, Cristian Coarfa, and Eveline Barbieri
Publicado en:
Nature Communications, 2022, ISSN 2041-1723
Editor:
Nature Publishing Group
DOI:
10.1038/s41467-022-31331-2
Autores:
Davide Cirillo, Iker Núñez‐Carpintero, Alfonso Valencia
Publicado en:
Molecular Oncology, Edición 15/4, 2021, Página(s) 817-829, ISSN 1574-7891
Editor:
Elsevier BV
DOI:
10.1002/1878-0261.12920
Autores:
Matteo Manica, Hyunjae Ryan Kim, Roland Mathis, Philippe Chouvarine, Dorothea Rutishauser, Laura De Vargas Roditi, Bence Szalai, Ulrich Wagner, Kathrin Oehl, Karim Saba, Arati Pati, Julio Saez-Rodriguez, Angshumoy Roy, Donald W. Parsons, Peter J. Wild, María Rodríguez Martínez, Pavel Sumazin
Publicado en:
npj Systems Biology and Applications, Edición 6/1, 2020, ISSN 2056-7189
Editor:
npj Sytems Biology and Applications
DOI:
10.1038/s41540-020-00147-5
Autores:
An-phi Nguyen, Dana Lea Moreno, Nicolas Le Bel, Maria Rodriguez Martinez
Publicado en:
Bioinformatics Advances, 2023, ISSN 2635-0041
Editor:
Oxford University Press
DOI:
10.1093/bioadv/vbad016
Autores:
Juan Carrillo-Reixach, Laura Torrens, Marina Simon-Coma, Laura Royo, Montserrat Domingo-Sàbat, Jordi Abril-Fornaguera, Nicholas Akers, Margarita Sala, Sonia Ragull, Magdalena Arnal, Núria Villalmanzo, Stefano Cairo, Alberto Villanueva, Roland Kappler, Marta Garrido, Laura Guerra, Constantino Sábado, Gabriela Guillén, Mar Mallo, David Piñeyro, María Vázquez-Vitali, Olga Kuchuk, María Elena
Publicado en:
Journal of Hepatology, Edición 73/2, 2020, Página(s) 328-341, ISSN 0168-8278
Editor:
Elsevier BV
DOI:
10.1016/j.jhep.2020.03.025
Autores:
Joris Cadow, Jannis Born, Matteo Manica, Ali Oskooei, María Rodríguez Martínez
Publicado en:
Nucleic Acids Research, Edición 48/W1, 2020, Página(s) W502-W508, ISSN 0305-1048
Editor:
Oxford University Press
DOI:
10.1093/nar/gkaa327
Autores:
Jean-Marie Ravel, L. Cristobal Monraz Gomez, Nicolas Sompairac, Laurence Calzone, Boris Zhivotovsky, Guido Kroemer, Emmanuel Barillot, Andrei Zinovyev, Inna Kuperstein
Publicado en:
Cancers, Edición 12/4, 2020, Página(s) 990, ISSN 2072-6694
Editor:
Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/cancers12040990
Autores:
Laura Cantini, Ulykbek Kairov, Aurélien de Reyniès, Emmanuel Barillot, François Radvanyi, Andrei Zinovyev
Publicado en:
Bioinformatics, Edición 35/21, 2019, Página(s) 4307-4313, ISSN 1367-4803
Editor:
Oxford University Press
DOI:
10.1093/bioinformatics/btz225
Autores:
Alexandra M. Stevens, Michael Xiang, Lisa N. Heppler, Isidora Tošić, Kevin Jiang, Jaime O. Munoz, Amos S. Gaikwad, Terzah M. Horton, Xin Long, Padmini Narayanan, Elizabeth L. Seashore, Maci C. Terrell, Raushan Rashid, Michael J. Krueger, Alicia E. Mangubat-Medina, Zachary T. Ball, Pavel Sumazin, Sarah R. Walker, Yoshimasa Hamada, Seiichi Oyadomari, Michele S. Redell, David A. Frank
Publicado en:
Blood Advances, Edición 3/24, 2019, Página(s) 4215-4227, ISSN 2473-9529
Editor:
The American Society of Hematology
DOI:
10.1182/bloodadvances.2019000499
Autores:
Filippo Castiglione, Dario Ghersi, Franco Celada
Publicado en:
Frontiers in Immunology, Edición 10, 2019, ISSN 1664-3224
Editor:
Frontiers in Immunology
DOI:
10.3389/fimmu.2019.01513
Autores:
Matteo Manica, Ali Oskooei, Jannis Born, Vigneshwari Subramanian, Julio Sáez-Rodríguez, María Rodríguez Martínez
Publicado en:
Molecular Pharmaceutics, Edición 16/12, 2019, Página(s) 4797-4806, ISSN 1543-8384
Editor:
American Chemical Society
DOI:
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International Journal of Molecular Sciences, Edición 20/18, 2019, Página(s) 4414, ISSN 1422-0067
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Multidisciplinary Digital Publishing Institute (MDPI)
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Cell Reports, Edición 30/6, 2020, Página(s) 1767-1779.e6, ISSN 2211-1247
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Cell Press
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Irina Balaur, Ludovic Roy, Alexander Mazein, S Gökberk Karaca, Ugur Dogrusoz, Emmanuel Barillot, Andrei Zinovyev
Publicado en:
Bioinformatics, Edición 36/8, 2020, Página(s) 2620-2622, ISSN 1367-4803
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Oxford University Press
DOI:
10.1093/bioinformatics/btz969
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Publicado en:
Entropy, Edición 22/3, 2020, Página(s) 296, ISSN 1099-4300
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Multidisciplinary Digital Publishing Institute (MDPI)
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Molecular Cell, 2022, Página(s) P2458-2471.E9, ISSN 1097-2765
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Cell Press
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10.1016/j.molcel.2022.04.019
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Publicado en:
Physics of Life Reviews, 2021, Página(s) 132-134, ISSN 1571-0645
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Elsevier BV
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10.1016/j.plrev.2021.05.004
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Publicado en:
Analytical Chemistry, 2023, ISSN 0003-2700
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American Chemical Society
DOI:
10.1101/2023.09.27.559846
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Cristian Axenie, Roman Bauer and María Rodríguez Martínez
Publicado en:
Symmetry 2021, 2021, ISSN 2073-8994
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Multidisciplinary Digital Publishing Institute (MDPI)
DOI:
10.3390/sym13091559
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Maria Kuksin, Daphné Morel, Marine Aglave, François-Xavier Danlos, Aurélien Marabelle, Andrei Zinovyev, Daniel Gautheret, Loïc Verlingue
Publicado en:
European Journal of Cancer, Edición 149, 2021, Página(s) 193-210, ISSN 0959-8049
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Pergamon Press Ltd.
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10.1016/j.ejca.2021.03.005
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Paola Stolfi, Luigi Manni, Marzia Soligo, Davide Vergni, Paolo Tieri
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Frontiers in Cell and Developmental Biology, Edición 8, 2020, ISSN 2296-634X
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Front Cell Dev Biol.
DOI:
10.3389/fcell.2020.545089
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Publicado en:
IEEE/ACM Transactions on Computational Biology and Bioinformatics, Edición 17/6, 2020, Página(s) 2141-2147, ISSN 1545-5963
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IEEE Computer Society
DOI:
10.1109/tcbb.2019.2936836
Autores:
Jannis Born, Matteo Manica, Joris Cadow, Greta Markert, Nil Adell Mill, Modestas Filipavicius, Nikita Janakarajan, Antonio Cardinale, Teodoro Laino, María Rodríguez Martínez
Publicado en:
Machine Learning: Science and Technology, Edición 2/2, 2021, Página(s) 025024, ISSN 2632-2153
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Machine Learning: Science and Technology
DOI:
10.1088/2632-2153/abe808
Autores:
Salih Demir, Negin Razizadeh, Emilie Indersie, Sophie Branchereau, Stefano Cairo, Roland Kappler
Publicado en:
Hepatology Communications, 2024, ISSN 2471-254x
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Hepatology Communications
DOI:
10.1097/hc9.0000000000000378
Autores:
Michael R. van Gerven, Linda Schild, Jennemiek van Arkel, Bianca Koopmans, Luuk A. Broeils, Loes A. M. Meijs, Romy van Oosterhout, Max M. van Noesel, Jan Koster, Sander R. van Hooff, Jan J. Molenaar, Marlinde L. van den Boogaard
Publicado en:
PLOS ONE, 2023, ISSN 1932-6203
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Public Library of Science
DOI:
10.1371/journal.pone.0289084
Autores:
Zinovyev A, Sadovsky M, Calzone L, Fouche A, Groeneveld CS, Chervov A, Barillot E, Gorban AN
Publicado en:
Frontiers in Molecular Biosciences, 2022, ISSN 2296-889X
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Lausanne: Frontiers Media S.A.,
DOI:
10.3389/fmolb.2021.793912
Autores:
Haiying Wang, Estelle Pujos-Guillot, Blandine Comte, Joao Luis de Miranda, Vojtech Spiwok, Ivan Chorbev, Filippo Castiglione, Paolo Tieri, Steven Watterson, Roisin McAllister, Tiago de Melo Malaquias, Massimiliano Zanin, Taranjit Singh Rai, Huiru Zheng
Publicado en:
Briefings in Bioinformatics, Edición Volume 22, Edición 2, March 2021, 2021, Página(s) 1543–1559, ISSN 1477-4054
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Oxford University Press
DOI:
10.1093/bib/bbaa237
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Pietro Di Lena, Claudia Sala, Andrea Prodi, Christine Nardini
Publicado en:
BMC Bioinformatics, Edición 21/1, 2020, ISSN 1471-2105
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BioMed Central
DOI:
10.1186/s12859-020-03592-5
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Concetta Ragone, Carmen Manolio, Beatrice Cavalluzzo, Angela Mauriello, Maria Lina Tornesello, Franco M Buonaguro, Filippo Castiglione, Luigi Vitagliano, Emanuela Iaccarino, Menotti Ruvo, Maria Tagliamonte, Luigi Buonaguro
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Journal for ImmunoTherapy of Cancer, Edición 9/5, 2021, Página(s) e002694, ISSN 2051-1426
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Journal for ImmunoTherapy of Cancer
DOI:
10.1136/jitc-2021-002694
Autores:
van den Boogaard, M.L.; Oka, R.; Hakkert, A.; Schild, L.; Ebus, M.E.; van Gerven, M.R.; Zwijnenburg, D.A.; Molenaar, P.; Hoyng, L.L.; Dolman, M.E.M.; Essing, A.H.W.; Koopmans, B.; Helleday, T.; Drost, J.; van Boxtel, R.; Versteeg, R.; Koster, J.; Molenaar, J.J.
Publicado en:
PNAS, Edición 1, 2021, ISSN 0027-8424
Editor:
National Academy of Sciences
DOI:
10.1073/pnas.2007898118
Autores:
Akila J Seneviratne, Sean Peters, David Clarke, Michael Dausmann, Michael Hecker, Brett Tully, Peter G Hains, Qing Zhong
Publicado en:
Bioinformatics, Edición Volume 37, Edición 24, 2021, Página(s) 4719-4726, ISSN 1367-4803
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Oxford University Press
DOI:
10.1093/bioinformatics/btab563
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Weber, Anna; Born, Jannis; Martínez, María Rodríguez
Publicado en:
Bioinformatics, Edición Volume 37, Edición Supplement_1, July 2021, 2021, Página(s) i237–i244, ISSN 1367-4803
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Oxford University Press
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10.1093/bioinformatics/btab294
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Iker Núñez-Carpintero, Marianyela Petrizzelli, Andrei Zinovyev, Davide Cirillo, Alfonso Valencia
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iScience, Edición 24/4, 2021, Página(s) 102365, ISSN 2589-0042
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iScience
DOI:
10.1016/j.isci.2021.102365
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Zhaoxiang Cai, Rebecca C. Poulos, Jia Liu, Qing Zhong
Publicado en:
iScience, Volume 25, Edición 2, 2022, 103798, 2022, ISSN 2589-0042
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Elsevier Inc.
DOI:
10.1016/j.isci.2022.103798
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Iliana Papadopoulou, An-phi Nguyen, Anna Weber, Maria Rodriguez Martinez
Publicado en:
Bioinformatics, 2022, ISSN 1460-2059
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Oxford University Press
DOI:
10.1093/bioinformatics/btac257
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Elizabeth A. Connolly, Peter S. Grimison, Lisa G. Horvath, Phillip J. Robinson and Roger R. Reddel
Publicado en:
Frontiers in Oncology, 2023, ISSN 2234-943X
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Frontiers Media S. A.
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10.3389/fonc.2023.1126736
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Rebecca C Poulos, Zhaoxiang Cai, Phillip J Robinson, Qing Zhong
Publicado en:
Proteomics, Edición 16159861, 2022, ISSN 1615-9861
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John Wiley & Sons
DOI:
10.1002/pmic.202200031
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Filippo Castiglione; Debashrito Deb; Anurag P. Srivastava; Pietro Liò; Arcangelo Liso
Publicado en:
Front. Immunol., 07 September 2021 Sec. Viral Immunology Volume 12 - 2021, Edición 15, 2021, ISSN 1664-3224
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Frontiers in Immunology
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10.17863/cam.75782
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Linzner, Dominik
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Edición 1, 2021
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TUprints
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10.12921/tuprints-00017403
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Lena, Pietro Di; Sala, Claudia; Prodi, Andrea; Nardini, Christine
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Edición 1, 2020
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Springer
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10.6084/m9.figshare.12585955
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Lena, Pietro Di; Sala, Claudia; Prodi, Andrea; Nardini, Christine
Publicado en:
2020
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Springer Nature
DOI:
10.6084/m9.figshare.12585952.v1
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An-phi Nguyen, Maria Rodriguez Martinez
Publicado en:
2021
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arXiv
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10.48550/arxiv.2106.10086
Autores:
Lena, Pietro Di; Sala, Claudia; Prodi, Andrea; Nardini, Christine
Publicado en:
2020
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Springer
DOI:
10.6084/m9.figshare.12585958.v1
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Sergey E. Golovenkin, Jonathan Bac, Alexander Chervov, Evgeny M. Mirkes, Yuliya V. Orlova, Emmanuel Barillot, Alexander N. Gorban and Andrei Zinovyev
Publicado en:
2020
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ArXiv
DOI:
10.5281/zenodo.4018714
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Nil A. Schubert, Sander R. van Hooff, Linda Schild, Kimberley Ober, Marjolein Hortensius, Kim van den Handel, Anke H.W. Essing, Bianca Koopmans, Manon Boeije, Natalie Proost, Marieke van de Ven, Selina Jansky, Sabine A. Stainczyk, Umut H. Toprak, Frank Westermann, Selma Eising, Jan J. Molenaar, Marlinde L. van den Boogaard
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2021
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bioRxiv
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10.1101/2021.10.27.465137
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Lorenzi, Lucia; Chiu, Hua-Sheng; Cobos, Francisco Avila; Gross, Stephen; Volders, Pieter-Jan; Cannoodt, Robrecht; Nuytens, Justine; Vanderheyden, Katrien; Anckaert, Jasper; Lefever, Steve; Goovaerts, Tine; Birkballe Hansen, Thomas; Kuersten, Scott; Nijs, Nele; Taghon, Tom; Vermaelen, Karim; Bracke, Ken R.; Saeys, Yvan; De Meyer, Tim; Deshpande, Nandan; Anande, Govardhan; Chen, Ting-Wen; Wilkins, M
Publicado en:
Edición 7, 2019
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Biorixv - The Preprint server for biology
DOI:
10.1101/807529
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Decamps, Clémentine; Arnaud, Alexis; Petitprez, Florent; Ayadi, Mira; Baurès, Aurélia; Armenoult, Lucile; Escalera, Sergio; Guyon, Isabelle; Nicolle, Rémy; Tomasini, Richard; de Reyniès, Aurélien; Cros, Jérôme; Blum, Yuna; Richard, Magali
Publicado en:
Edición 12, 2021
Editor:
Springer Nature
DOI:
10.6084/m9.figshare.16726873
Autores:
Alexander Chervov, Andrei Zinovyev
Publicado en:
2022
Editor:
arXiv
DOI:
10.48550/arxiv.2208.05229
Autores:
Borovitskiy, Viacheslav; Karimi, Mohammad Reza; Somnath, Vignesh Ram; Krause, Andreas
Publicado en:
26th International Conference on Artificial Intelligence and Statistics (AISTATS), 2022
Editor:
arXiv
DOI:
10.48550/arxiv.2211.01689
Autores:
"Dominik Linzner, Heinz Koeppl """
Publicado en:
2021
Editor:
38th International Conference on Machine Learning (ICML 2021)
DOI:
10.5281/zenodo.5234917
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Alexander Chervov; Andrei Zinovyev
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Crossref, Edición 6, 2021
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Zenodo
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10.1109/ijcnn52387.2021.9534249
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Somnath, Vignesh Ram; Pariset, Matteo; Hsieh, Ya-Ping; Martinez, Maria Rodriguez; Krause, Andreas; Bunne, Charlotte
Publicado en:
39th Conference on Uncertainty in Artificial Intelligence (UAI 2023, 2023
Editor:
arXiv
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10.48550/arxiv.2302.11419
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Dejan Štepec, Danijel Skočaj
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ROSUS 2020 - Računalniška obdelava slik in njena uporaba v Sloveniji 2020: Zbornik 15. strokovne konference, 2020, Página(s) 7-26, ISBN 9789612863371
Editor:
University of Maribor Press
DOI:
10.18690/978-961-286-337-1.1
Autores:
Stepec, D.; Skocaj, D.
Publicado en:
Edición 1, 2020
Editor:
Springer
DOI:
10.5281/zenodo.4288328
Autores:
Dominik Linzner
Michael Schmidt
Heinz Koeppl
Publicado en:
33rd Conference on Neural Information Processing Systems (NeurIPS 2019), 2019
Editor:
NIPS
Autores:
Dominik Linzner
Heinz Koeppl
Publicado en:
Association for the Advancement of Artificial Intelligence, 2019
Editor:
Association for the Advancement of Artificial Intelligence
Autores:
Engelmann, Nikolai; Linzner, Dominik; Koeppl, Heinz
Publicado en:
Edición 10, 2020
Editor:
37th International Conference on Machine Learning (ICML)
DOI:
10.5281/zenodo.3957199
Autores:
Jannis Born, Matteo Manica, Ali Oskooei, María Rodríguez Martínez
Publicado en:
2019
Editor:
Workshop for Physical Sciences at NeurIPS
DOI:
10.5281/zenodo.3610233
Autores:
Dejan Štepec, Danijel Skočaj
Publicado en:
2020, ISBN 9789-612863371
Editor:
University of Maribor Press
DOI:
10.18690/978-961-286-337-1
Autores:
Matthias Eisenmann; Dejan Štepec; et. al.
Publicado en:
IEEE / CVF Computer Vision and Pattern Recognition Conference (CVPR), 2023
Editor:
IEEE Xplore
DOI:
10.1109/cvpr52729.2023.01911
Autores:
Haab, Jonathan; Deutschmann, Nicolas; Martínez, Maria Rodríguez
Publicado en:
ECML PKDD International Workshop on eXplainable Knowledge Discovery in Data Mining, Grenoble/France (19 September 2022), 2022
Editor:
arXiv
DOI:
10.48550/arxiv.2207.13018
Autores:
Dejan Stepec, Danijel Skocaj
Publicado en:
2021
Editor:
Computer Vision for Microscopy Image Analysis (CVMI) workshop
DOI:
10.5281/zenodo.5158712
Autores:
Álvaro García Faura, Dejan Štepec, Tomaž Martinčič, Danijel Skočaj
Publicado en:
2021
Editor:
arXiv.org
Autores:
Petrizzelli, Marianyela; Merlevede, Jane; Zinovyev, Andrei
Publicado en:
Edición 2, 2020, ISBN 978-1-0716-1019-0
Editor:
Springer
DOI:
10.5281/zenodo.3952244
Autores:
Ali Oskooei, Sophie Mai Chau, Jonas Weiss, Arvind Sridhar, María Rodríguez Martínez, Bruno Michel
Publicado en:
Explainable AI in Healthcare and Medicine, 2021, Página(s) 93-105, ISBN 978-3-030-53352-6
Editor:
Springer
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