Linking livestock genetic diversity with three thousand years of agricultural crises and resilience

Project Information

PALAEOFARM

Grant agreement ID: 853272

DOI

10.3030/853272

EC signature date 20 November 2019

Start date 1 September 2020

End date 28 February 2027

Funded under

• EXCELLENT SCIENCE - European Research Council (ERC)

Total cost

€ 1 499 998,00

EU contribution

€ 1 499 998,00

Coordinated by

LUDWIG-MAXIMILIANS-UNIVERSITAET MUENCHEN
Germany

CORDIS provides links to public deliverables and publications of HORIZON projects.

Links to deliverables and publications from FP7 projects, as well as links to some specific result types such as dataset and software, are dynamically retrieved from OpenAIRE .

Publications

Peer reviewed articles (14)

Grey wolf genomic history reveals a dual ancestry of dogs

Author(s): Anders Bergström; David W. G. Stanton; Ulrike H. Taron; Laurent Frantz; Mikkel-Holger S. Sinding; Erik Ersmark; Saskia Pfrengle; Molly Cassatt-Johnstone; Ophélie Lebrasseur; Linus Girdland-Flink; Daniel M. Fernandes; Morgane Ollivier; Leo Speidel; Shyam Gopalakrishnan; Michael V. Westbury; Jazmin Ramos-Madrigal; Tatiana R. Feuerborn; Ella Reiter; Joscha Gretzinger; Susanne C. Münzel; Pooja Swal
Published in: Nature, 2022, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-022-04824-9

Ancient chicken remains reveal the origins of virulence in Marek’s disease virus

Author(s): Steven R. Fiddaman, Evangelos A. Dimopoulos, Ophélie Lebrasseur, Louis du Plessis, Bram Vrancken, Sophy Charlton, Ashleigh F. Haruda, Kristina Tabbada, Patrik G. Flammer, Stefan Dascalu, Nemanja Marković, Hannah Li, Gabrielle Franklin, Robert Symmons, Henriette Baron, László Daróczi-Szabó, Dilyara N. Shaymuratova, Igor V. Askeyev, Olivier Putelat, Maria Sana, Hossein Davoudi, Homa Fathi, Ami
Published in: Science, Issue 382, 2024, Page(s) 1276-1281, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.adg2238

The biocultural origins and dispersal of domestic chickens

Author(s): Joris Peters, Ophélie Lebrasseur, Evan K Irving-Pease, Ptolemaios Dimitrios Paxinos, Julia Best, Riley Smallman, Cécile Callou, Armelle Gardeisen, Simon Trixl, Laurent Frantz, Naomi Sykes, Dorian Q Fuller, Greger Larson
Published in: Proceedings of the National Academy of Sciences, 2023, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2121978119

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture.

Author(s): Jennifer R. S. Meadows, Jeffrey M. Kidd, Guo-Dong Wang, Heidi G. Parker, Peter Z. Schall, Matteo Bianchi, Matthew J. Christmas, Katia Bougiouri, Reuben M. Buckley, Christophe Hitte, Anthony K. Nguyen, Chao Wang, Vidhya Jagannathan, Julia E. Niskanen, Laurent A. F. Frantz, Meharji Arumilli, Sruthi Hundi, Kerstin Lindblad-Toh, Catarina Ginja, Kadek Karang Agustina, Catherine André, Adam R. Boyko, B
Published in: Genome Biology, 2023, ISSN 1474-760X
Publisher: BioMed Central
DOI: 10.1186/s13059-023-03023-7

Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

Author(s): Tatiana R Feuerborn, Alberto Carmagnini, Robert J Losey, Tatiana Nomokonova, Arthur Askeyev, Igor Askeyev, Oleg Askeyev, Ekaterina E Antipina, Martin Appelt, Olga P Bachura, Fiona Beglane, Daniel G Bradley, Kevin G Daly, Shyam Gopalakrishnan, Kristian Murphy Gregersen, Chunxue Guo, Andrei V Gusev, Carleton Jones, Pavel A Kosintsev, Yaroslav V Kuzmin, Valeria Mattiangeli, Angela R Perri, Andrei V P
Published in: PNAS, 2021, ISSN 0027-8424
Publisher: National Academy of Sciences
DOI: 10.1073/pnas.2100338118

Understanding the evolution of immune genes in jawed vertebrates

Author(s): Michal Vinkler; Steven R. Fiddaman; Martin Těšický; Emily A. O'Connor; Anna E. Savage; Tobias L. Lenz; Adrian L. Smith; Jim Kaufman; Daniel I. Bolnick; Charli S. Davies; Neira Dedić; Andrew S. Flies; M. Mercedes Gómez Samblás; Amberleigh E. Henschen; Karel Novák; Gemma Palomar; Nynke Raven; Kalifa Samaké; Joel Slade; Nithya Kuttiyarthu Veetil; Eleni Voukali; Jacob Höglund; David S. Richar
Published in: Journal of Evolutionary Biology, 2023, ISSN 1010-061X
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/jeb.14181

Fourth Report on Chicken Genes and Chromosomes 2022

Author(s): Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Jennifer Balacco, Adam Balic, Philippe Bardou, Paul Barela, Yves Bigot, Heath Blackmon, Pavel M Borodin, Rachel Carroll, Meya C Casono, Mathieu Charles, Hans Cheng, Maddie Chiodi, Lacey Cigan, Lyndon M Coghill, Richard Crooijmans, Neelabja Das, Sean Davey, Asya Davidian, Fabien Degalez, Jack M Dekkers, Martijn D
Published in: Cytogenetic and Genome Research, 2023, ISSN 1424-8581
Publisher: S. Karger AG
DOI: 10.1159/000529376

Pleistocene origins, western ghost lineages, and the emerging phylogeographic history of the red wolf and coyote.

Author(s): Benjamin N. Sacks; Kieren J. Mitchell; Cate B. Quinn; Lauren M. Hennelly; Mikkel-Holger S. Sinding; Mark J. Statham; Sophie Preckler-Quisquater; Steven R. Fain; Logan Kistler; Stevi Lee Vanderzwan; Julie Meachen; Elaine A. Ostrander; Laurent A. F. Frantz; Laurent A. F. Frantz
Published in: Molecular Ecology, Issue 1, 2021, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.16048

Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors

Author(s): Steven R Fiddaman, Michal Vinkler, Simon G Spiro, Hila Levy, Christopher A Emerling, Amy C Boyd, Evangelos A Dimopoulos, Juliana A Vianna, Theresa L Cole, Hailin Pan, Miaoquan Fang, Guojie Zhang, Tom Hart, Laurent A F Frantz, Adrian L Smith
Published in: Molecular Biology and Evolution, 2021, ISSN 0737-4038
Publisher: Oxford University Press
DOI: 10.1093/molbev/msab354

Dire wolves were the last of an ancient New World canid lineage

Author(s): Angela R. Perri; Kieren J. Mitchell; Alice Mouton; Sandra Álvarez-Carretero; Ardern Hulme-Beaman; Ardern Hulme-Beaman; James Haile; Alexandra Jamieson; Julie Meachen; Audrey T. Lin; Audrey T. Lin; Blaine W. Schubert; Carly Ameen; Ekaterina Antipina; Pere Bover; Selina Brace; Alberto Carmagnini; Christian Carøe; José Alfredo Samaniego Castruita; James C. Chatters; Keith Dobney; Mario dos Reis; A
Published in: Nature, 2021, ISSN 0028-0836
Publisher: Nature Publishing Group
DOI: 10.1038/s41586-020-03082-x

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

Author(s): Jocelyn Plassais, Heidi G Parker, Alberto Carmagnini, Nicolas Dubos, Ilenia Papa, Kevin Bevant, Thomas Derrien, Lauren M Hennelly, D Thad Whitaker, Alex C Harris, Andrew N Hogan, Heather J Huson, Victor F Zaibert, Anna Linderholm, James Haile, Thierry Fest, Bilal Habib, Benjamin N Sacks, Norbert Benecke, Alan K Outram, Mikhail V Sablin, Mietje Germonpré, Greger Larson, Laurent Frantz, Elaine A Os
Published in: Current Biology, 2022, ISSN 0960-9822
Publisher: Cell Press
DOI: 10.1016/j.cub.2021.12.036

The genomic history and global expansion of domestic donkeys

Author(s): Evelyn T. Todd; Laure Tonasso-Calvière; Loreleï Chauvey; Stéphanie Schiavinato; Antoine Fages; Andaine Seguin-Orlando; Pierre Clavel; Naveed Khan; Lucía Pérez Pardal; Laura Patterson Rosa; Pablo Librado; Harald Ringbauer; Marta Verdugo; John Southon; Jean-Marc Aury; Aude Perdereau; Emmanuelle Vila; Matilde Marzullo; Ornella Prato; Umberto Tecchiati; Giovanna Bagnasco Gianni; Antonio Tagliacoz
Published in: Science, 2022, ISSN 0036-8075
Publisher: American Association for the Advancement of Science
DOI: 10.1126/science.abo3503

Population genomic, olfactory, dietary, and gut microbiota analyses demonstrate the unique evolutionary trajectory of feral pigs

Author(s): Simona Petrelli,Maria Buglione,Valeria Maselli,Claudia Troiano,Greger Larson,Laurent Frantz,Aurelie Manin,Ezio Ricca,Loredana Baccigalupi,Dominic Wright,Christian Pietri,Domenico Fulgione
Published in: Molecular Ecology, 2021, ISSN 0962-1083
Publisher: Blackwell Publishing Inc.
DOI: 10.1111/mec.16238

HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data

Author(s): Evangelos A. Dimopoulos, Alberto Carmagnini, Irina M. Velsko, Christina Warinner, Greger Larson, Laurent A. F. Frantz, Evan K. Irving-Pease
Published in: PLoS Computational Biology, 2022, ISSN 1553-734X
Publisher: Public Library of Science
DOI: 10.1371/journal.pcbi.1010493