Linking livestock genetic diversity with three thousand years of agricultural crises and resilience

Informations projet

PALAEOFARM

N° de convention de subvention: 853272

DOI

10.3030/853272

Date de signature de la CE 20 Novembre 2019

Date de début 1 Septembre 2020

Date de fin 28 Février 2027

Financé au titre de

• EXCELLENT SCIENCE - European Research Council (ERC)

Coût total

€ 1 499 998,00

Contribution de l’UE

€ 1 499 998,00

Coordonné par

LUDWIG-MAXIMILIANS-UNIVERSITAET MUENCHEN
Germany

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Publications

Peer reviewed articles (14)

Grey wolf genomic history reveals a dual ancestry of dogs

Auteurs: Anders Bergström; David W. G. Stanton; Ulrike H. Taron; Laurent Frantz; Mikkel-Holger S. Sinding; Erik Ersmark; Saskia Pfrengle; Molly Cassatt-Johnstone; Ophélie Lebrasseur; Linus Girdland-Flink; Daniel M. Fernandes; Morgane Ollivier; Leo Speidel; Shyam Gopalakrishnan; Michael V. Westbury; Jazmin Ramos-Madrigal; Tatiana R. Feuerborn; Ella Reiter; Joscha Gretzinger; Susanne C. Münzel; Pooja Swal
Publié dans: Nature, 2022, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/s41586-022-04824-9

Ancient chicken remains reveal the origins of virulence in Marek’s disease virus

Auteurs: Steven R. Fiddaman, Evangelos A. Dimopoulos, Ophélie Lebrasseur, Louis du Plessis, Bram Vrancken, Sophy Charlton, Ashleigh F. Haruda, Kristina Tabbada, Patrik G. Flammer, Stefan Dascalu, Nemanja Marković, Hannah Li, Gabrielle Franklin, Robert Symmons, Henriette Baron, László Daróczi-Szabó, Dilyara N. Shaymuratova, Igor V. Askeyev, Olivier Putelat, Maria Sana, Hossein Davoudi, Homa Fathi, Ami
Publié dans: Science, Numéro 382, 2024, Page(s) 1276-1281, ISSN 0036-8075
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/science.adg2238

The biocultural origins and dispersal of domestic chickens

Auteurs: Joris Peters, Ophélie Lebrasseur, Evan K Irving-Pease, Ptolemaios Dimitrios Paxinos, Julia Best, Riley Smallman, Cécile Callou, Armelle Gardeisen, Simon Trixl, Laurent Frantz, Naomi Sykes, Dorian Q Fuller, Greger Larson
Publié dans: Proceedings of the National Academy of Sciences, 2023, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.2121978119

Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture.

Auteurs: Jennifer R. S. Meadows, Jeffrey M. Kidd, Guo-Dong Wang, Heidi G. Parker, Peter Z. Schall, Matteo Bianchi, Matthew J. Christmas, Katia Bougiouri, Reuben M. Buckley, Christophe Hitte, Anthony K. Nguyen, Chao Wang, Vidhya Jagannathan, Julia E. Niskanen, Laurent A. F. Frantz, Meharji Arumilli, Sruthi Hundi, Kerstin Lindblad-Toh, Catarina Ginja, Kadek Karang Agustina, Catherine André, Adam R. Boyko, B
Publié dans: Genome Biology, 2023, ISSN 1474-760X
Éditeur: BioMed Central
DOI: 10.1186/s13059-023-03023-7

Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

Auteurs: Tatiana R Feuerborn, Alberto Carmagnini, Robert J Losey, Tatiana Nomokonova, Arthur Askeyev, Igor Askeyev, Oleg Askeyev, Ekaterina E Antipina, Martin Appelt, Olga P Bachura, Fiona Beglane, Daniel G Bradley, Kevin G Daly, Shyam Gopalakrishnan, Kristian Murphy Gregersen, Chunxue Guo, Andrei V Gusev, Carleton Jones, Pavel A Kosintsev, Yaroslav V Kuzmin, Valeria Mattiangeli, Angela R Perri, Andrei V P
Publié dans: PNAS, 2021, ISSN 0027-8424
Éditeur: National Academy of Sciences
DOI: 10.1073/pnas.2100338118

Understanding the evolution of immune genes in jawed vertebrates

Auteurs: Michal Vinkler; Steven R. Fiddaman; Martin Těšický; Emily A. O'Connor; Anna E. Savage; Tobias L. Lenz; Adrian L. Smith; Jim Kaufman; Daniel I. Bolnick; Charli S. Davies; Neira Dedić; Andrew S. Flies; M. Mercedes Gómez Samblás; Amberleigh E. Henschen; Karel Novák; Gemma Palomar; Nynke Raven; Kalifa Samaké; Joel Slade; Nithya Kuttiyarthu Veetil; Eleni Voukali; Jacob Höglund; David S. Richar
Publié dans: Journal of Evolutionary Biology, 2023, ISSN 1010-061X
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/jeb.14181

Fourth Report on Chicken Genes and Chromosomes 2022

Auteurs: Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Jennifer Balacco, Adam Balic, Philippe Bardou, Paul Barela, Yves Bigot, Heath Blackmon, Pavel M Borodin, Rachel Carroll, Meya C Casono, Mathieu Charles, Hans Cheng, Maddie Chiodi, Lacey Cigan, Lyndon M Coghill, Richard Crooijmans, Neelabja Das, Sean Davey, Asya Davidian, Fabien Degalez, Jack M Dekkers, Martijn D
Publié dans: Cytogenetic and Genome Research, 2023, ISSN 1424-8581
Éditeur: S. Karger AG
DOI: 10.1159/000529376

Pleistocene origins, western ghost lineages, and the emerging phylogeographic history of the red wolf and coyote.

Auteurs: Benjamin N. Sacks; Kieren J. Mitchell; Cate B. Quinn; Lauren M. Hennelly; Mikkel-Holger S. Sinding; Mark J. Statham; Sophie Preckler-Quisquater; Steven R. Fain; Logan Kistler; Stevi Lee Vanderzwan; Julie Meachen; Elaine A. Ostrander; Laurent A. F. Frantz; Laurent A. F. Frantz
Publié dans: Molecular Ecology, Numéro 1, 2021, ISSN 0962-1083
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/mec.16048

Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors

Auteurs: Steven R Fiddaman, Michal Vinkler, Simon G Spiro, Hila Levy, Christopher A Emerling, Amy C Boyd, Evangelos A Dimopoulos, Juliana A Vianna, Theresa L Cole, Hailin Pan, Miaoquan Fang, Guojie Zhang, Tom Hart, Laurent A F Frantz, Adrian L Smith
Publié dans: Molecular Biology and Evolution, 2021, ISSN 0737-4038
Éditeur: Oxford University Press
DOI: 10.1093/molbev/msab354

Dire wolves were the last of an ancient New World canid lineage

Auteurs: Angela R. Perri; Kieren J. Mitchell; Alice Mouton; Sandra Álvarez-Carretero; Ardern Hulme-Beaman; Ardern Hulme-Beaman; James Haile; Alexandra Jamieson; Julie Meachen; Audrey T. Lin; Audrey T. Lin; Blaine W. Schubert; Carly Ameen; Ekaterina Antipina; Pere Bover; Selina Brace; Alberto Carmagnini; Christian Carøe; José Alfredo Samaniego Castruita; James C. Chatters; Keith Dobney; Mario dos Reis; A
Publié dans: Nature, 2021, ISSN 0028-0836
Éditeur: Nature Publishing Group
DOI: 10.1038/s41586-020-03082-x

Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids

Auteurs: Jocelyn Plassais, Heidi G Parker, Alberto Carmagnini, Nicolas Dubos, Ilenia Papa, Kevin Bevant, Thomas Derrien, Lauren M Hennelly, D Thad Whitaker, Alex C Harris, Andrew N Hogan, Heather J Huson, Victor F Zaibert, Anna Linderholm, James Haile, Thierry Fest, Bilal Habib, Benjamin N Sacks, Norbert Benecke, Alan K Outram, Mikhail V Sablin, Mietje Germonpré, Greger Larson, Laurent Frantz, Elaine A Os
Publié dans: Current Biology, 2022, ISSN 0960-9822
Éditeur: Cell Press
DOI: 10.1016/j.cub.2021.12.036

The genomic history and global expansion of domestic donkeys

Auteurs: Evelyn T. Todd; Laure Tonasso-Calvière; Loreleï Chauvey; Stéphanie Schiavinato; Antoine Fages; Andaine Seguin-Orlando; Pierre Clavel; Naveed Khan; Lucía Pérez Pardal; Laura Patterson Rosa; Pablo Librado; Harald Ringbauer; Marta Verdugo; John Southon; Jean-Marc Aury; Aude Perdereau; Emmanuelle Vila; Matilde Marzullo; Ornella Prato; Umberto Tecchiati; Giovanna Bagnasco Gianni; Antonio Tagliacoz
Publié dans: Science, 2022, ISSN 0036-8075
Éditeur: American Association for the Advancement of Science
DOI: 10.1126/science.abo3503

Population genomic, olfactory, dietary, and gut microbiota analyses demonstrate the unique evolutionary trajectory of feral pigs

Auteurs: Simona Petrelli,Maria Buglione,Valeria Maselli,Claudia Troiano,Greger Larson,Laurent Frantz,Aurelie Manin,Ezio Ricca,Loredana Baccigalupi,Dominic Wright,Christian Pietri,Domenico Fulgione
Publié dans: Molecular Ecology, 2021, ISSN 0962-1083
Éditeur: Blackwell Publishing Inc.
DOI: 10.1111/mec.16238

HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data

Auteurs: Evangelos A. Dimopoulos, Alberto Carmagnini, Irina M. Velsko, Christina Warinner, Greger Larson, Laurent A. F. Frantz, Evan K. Irving-Pease
Publié dans: PLoS Computational Biology, 2022, ISSN 1553-734X
Éditeur: Public Library of Science
DOI: 10.1371/journal.pcbi.1010493